Marker Genes
Dataset: Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
- tissue: Brain
- ontology: Brain
- genotype: C57BL/6 x DBA/2
- stage:
- treatment condition: WT
- cell/nucleus: Nuclei
- pmid: 29545511
- subset name: all
- total genes: Not reported
- clustering: Jaccard-Louvain
- pseudotime: t-SNE
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110823
Rows:73
| dataset id | cluster id | cluster name | cell type name | sample id | |
|---|---|---|---|---|---|
| 69 | 70 | Astrocyte - Gfap | all | Details | |
| 69 | 69 | Astrocyte - Prdm16 | all | Details | |
| 69 | 68 | Astrocyte - Slc7a10 | all | Details | |
| 69 | 71 | Bergman Glia | all | Details | |
| 69 | 52 | Cajal-Retzius | all | Details | |
| 69 | 28 | Cerebellar Granule | all | Details | |
| 69 | 25 | Cerebellar Granule Precursor | all | Details | |
| 69 | 27 | Cerebellar Interneuron - Golgi_Stellate_Basket | all | Details | |
| 69 | 26 | Cerebellar Interneuron - Stellate and Basket | all | Details | |
| 69 | 29 | Cerebellar Interneuron Precursor | all | Details | |
| 69 | 24 | Cerebellar Interneuron Progenitor | all | Details | |
| 69 | 18 | Claustrum Pyramidal | all | Details | |
| 69 | 59 | Committed Oligodendroctye Precursor Cell1 | all | Details | |
| 69 | 60 | Committed Oligodendroctye Precursor Cell2 | all | Details | |
| 69 | 7 | Cortex Layer 2/Layer 3 Pyramidal Met | all | Details | |
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Details | |
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Details | |
| 69 | 10 | Cortex Layer 4 Pyramidal - Rorb | all | Details | |
| 69 | 8 | Cortex Layer 4 Pyramidal - Wnt5b | all | Details | |
| 69 | 11 | Cortex Layer 4/Layer 5 Pyramidal | all | Details | |
| 69 | 13 | Cortex Layer 5 Pyramidal - Fezf2 | all | Details | |
| 69 | 12 | Cortex Layer 5 Pyramidal - Itbg3 | all | Details | |
| 69 | 15 | Cortex Layer 5/Layer 6 Pyramidal - Sulf1 | all | Details | |
| 69 | 17 | Cortex Layer 6 Pyramidal - Htr1f | all | Details | |
| 69 | 14 | Cortex Layer 6a Pyramidal | all | Details | |
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Details | |
| 69 | 16 | Cortex Layer5/Layer 6 Pyramidal- Npr3 | all | Details | |
| 69 | 64 | Endothelia | all | Details | |
| 69 | 72 | Ependyma | all | Details | |
| 69 | 39 | Hippocampal Granule Precursor - Nrp2 | all | Details | |
| 69 | 40 | Hippocampal Granule/Pyramidal CA3 | all | Details | |
| 69 | 33 | Hippocampal Pyramidal - Cr2 | all | Details | |
| 69 | 35 | Hippocampal Pyramidal - Crym | all | Details | |
| 69 | 38 | Hippocampal Pyramidal - Grik4 | all | Details | |
| 69 | 41 | Hippocampal Pyramidal - Npy2r | all | Details | |
| 69 | 37 | Hippocampal Pyramidal Precursor | all | Details | |
| 69 | 36 | Hippocampus Granule Progenitor Mki67 | all | Details | |
| 69 | 30 | Medulla Glycinergic Interneuron - Rxfp2 | all | Details | |
| 69 | 31 | Medulla Interneuron - Rxfp2 | all | Details | |
| 69 | 19 | Mesencephalic Tectum Glutamatergic | all | Details | |
| 69 | 63 | Microglia | all | Details | |
| 69 | 50 | Migrating Interneuron - Adarb2 | all | Details | |
| 69 | 46 | Migrating Interneuron - Cpa6 | all | Details | |
| 69 | 47 | Migrating Interneuron - Foxp2 | all | Details | |
| 69 | 49 | Migrating Interneuron - Lgr6 | all | Details | |
| 69 | 44 | Migrating Interneuron - Lhx6 | all | Details | |
| 69 | 48 | Migrating Interneuron - Pbx3 | all | Details | |
| 69 | 45 | Migrating Interneuron - Trdn | all | Details | |
| 69 | 32 | Nigral Dopaminergic | all | Details | |
| 69 | 1 | Olfactory Bulb Mitral and Tufted - Eomes | all | Details | |
| 69 | 2 | Olfactory Bulb Mitral and Tufted - Ms4a15 | all | Details | |
| 69 | 3 | Olfactory Bulb Mitral and Tufted - Svil | all | Details | |
| 69 | 73 | Olfactory Ensheathing Cells (OEC) | all | Details | |
| 69 | 56 | Oligodendroctye Myelinating 1 | all | Details | |
| 69 | 55 | Oligodendroctye Myelinating 2 | all | Details | |
| 69 | 58 | Oligodendroctye Newly Formed 1 | all | Details | |
| 69 | 61 | Oligodendroctye Precursor Cells | all | Details | |
| 69 | 57 | Oligodendrocyte Mature | all | Details | |
| 69 | 62 | Perivivascular Macrophage | all | Details | |
| 69 | 22 | Purkinje Early | all | Details | |
| 69 | 23 | Purkinje Late | all | Details | |
| 69 | 65 | Smooth Muscle Cells | all | Details | |
| 69 | 42 | Spinal Cord Glutamatergic - Hmga2 | all | Details | |
| 69 | 43 | Spinal Cord Glutamatergic Gna14 | all | Details | |
| 69 | 4 | Striatal Medium Spiny Neurons | all | Details | |
| 69 | 34 | Subiculum Pyramidal | all | Details | |
| 69 | 51 | Subventricular Zone Stem Cell | all | Details | |
| 69 | 20 | Thalamic Gluatamatergic | all | Details | |
| 69 | 21 | Thalamic Interneuron | all | Details | |
| 69 | 53 | Unresolved Cluster53 | all | Details | |
| 69 | 54 | Unresolved Cluster54 | all | Details | |
| 69 | 67 | Vascular and Leptomeningeal Cell1 | all | Details | |
| 69 | 66 | Vascular and Leptomeningeal Cell2 | all | Details |