Marker Genes
Dataset: Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
- tissue: Brain
- ontology: Brain
- genotype: C57BL/6 x DBA/2
- stage:
- treatment condition: WT
- cell/nucleus: Nuclei
- pmid: 29545511
- subset name: all
- total genes: Not reported
- clustering: Jaccard-Louvain
- pseudotime: t-SNE
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110823
Rows:50
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Satb2 | 212712 | 2679336 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Ccbe1 | 320924 | 2445053 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Mef2c | 17260 | 99458 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Ptprk | 19272 | 103310 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Mpped1 | 223726 | 106316 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | RP23-230F2.8 | NULL | |||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Nwd2 | 319807 | 1920464 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Mlip | 69642 | 1916892 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Dok5 | 76829 | 1924079 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Cux2 | 13048 | 107321 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Trpc4 | 22066 | 109525 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Tafa2 | 268354 | 2143691 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Rorb | 225998 | 1343464 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Tafa1 | 320265 | 2443695 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Rasgrf2 | 19418 | 109137 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Khdrbs2 | 170771 | 2159649 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Hs3st2 | 195646 | 1333802 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Arpp21 | 74100 | 107562 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | L3mbtl4 | 320858 | 2444889 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Celf2 | 14007 | 1338822 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Ptprd | 19266 | 97812 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Clstn2 | 64085 | 1929897 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Adamts3 | 330119 | 3045353 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Gm26871 | 102634933 | 5477365 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Frmd4a | 209630 | 1919850 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Kcnh7 | 170738 | 2159566 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Rgs6 | 50779 | 1354730 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Plxna4 | 243743 | 2179061 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Necab1 | 69352 | 1916602 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Itpr1 | 16438 | 96623 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Epha3 | 13837 | 99612 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Trpc5 | 22067 | 109524 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Tiam2 | 24001 | 1344338 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Ptpro | 19277 | 1097152 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Kcnh5 | 238271 | 3584508 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Nell2 | 54003 | 1858510 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Khdrbs3 | 13992 | 1313312 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Ldb2 | 16826 | 894670 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Kcnh1 | 16510 | 1341721 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Zeb2 | 24136 | 1344407 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Tmtc1 | 387314 | 3039590 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Clmp | 71566 | 1918816 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Cnksr2 | 245684 | 2661175 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Osbpl1a | 64291 | 1927551 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Fat4 | 329628 | 3045256 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Dpysl5 | 65254 | 1929772 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Dab1 | 13131 | 108554 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Macrod2 | 72899 | 1920149 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Cux1 | 13047 | 88568 | ||||||
| 69 | 9 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Mef2c | all | Sh3rf3 | 237353 | 2444637 |