Single Cell Markers


paper title pubmed id pubmed date dataset id species subset name tissue_type treatment cluster counts
A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation 27365425 2016 Aug 25 100 Mouse all Blood - 4 details
Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes and progenitors 28428369 2017 Apr 21 52 Human all Blood - 10 details
Temporal specificity and heterogeneity of Drosophila immune cells 32162708 2020 Jun 17 14 Drosophila combined Blood - 16 details
A single-cell survey of Drosophila blood 32396065 2020 May 12 12 Drosophila combined Blood - 17 details
Single-cell RNA sequencing identifies novel cell types in Drosophila 32487456 2020 Apr 20 98 Drosophila all Blood - 5 details
Mosquito cellular immunity at single-cell resolution 32855340 2020 Aug 28 108 Mosquito aedes Blood - 9 details
A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing 31413257 2019 Aug 14 101 Human all Bone marrow - 19 details
Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding 29545511 2018 Apr 13 69 Mouse all Brain - 73 details
Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain 29608178 2018 Jun 42 Zebrafish all Brain - 63 details
A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain. 29909982 2018 Aug 9 59 Drosophila age_0 Brain - 87 details
Single-Cell Transcriptomics Analyses of Neural Stem Cell Heterogeneity and Contextual Plasticity in a Zebrafish Brain Model of Amyloid Toxicity 31018142 2019 Apr 23 32 Zebrafish merged Brain - 20 details
Single cell transcriptome atlas of the Drosophila larval brain. 31746739 2019 Nov 20 15 Drosophila combined Brain - 27 details
The Drosophila embryo at single-cell transcriptome resolution 28860209 2017 Oct 13 96 Drosophila all Embryo - 9 details
Single-Cell RNA-Seq Reveals Cellular Heterogeneity of Pluripotency Transition and X Chromosome Dynamics during Early Mouse Development 30840884 2019 Mar 5 109 Mouse all Embryo - 3 details
Single cell RNA-sequencing identifies a metabolic aspect of apoptosis in Rbf mutant 30479347 2018 Nov 27 54 Drosophila combined eye disc - 15 details
A Single-Cell Transcriptome Atlas of the Mouse Glomerulus 29794128 2018 Aug 92 Mouse all Glomerulus - 5 details
Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq 29576475 2018 Apr 2 53 Zebrafish all Habenula - 17 details
A single-cell survey of the small intestinal epithelium 29144463 2017 Nov 16 111 Mouse all Intestine - 12 details
Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition 30526881 2018 Dec 6 113 Human all Intestine - 9 details
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human intestine 31753849 2020 Feb 3 115 Human Intestine Intestine - 7 details
The Cellular Diversity and Transcription Factor Code of Drosophila Enteroendocrine Cells 31851941 2019 Dec 17 4 Drosophila WT Intestine - 11 details
A cell atlas of the adult Drosophila midgut. 31915294 2020 Jan 21 8 Drosophila WT Intestine - 22 details
Single-Cell RNA Sequencing Reveals Size-Dependent Effects of Polystyrene Microplastics on Immune and Secretory Cell Populations from Zebrafish Intestines 32092251 2020 Mar 17 112 zebrafish all Intestine - 12 details
Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single-cell resolution using RNA sequencing 28878000 2017 Oct 2 99 Zebrafish all Kidney - 17 details
Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease 29622724 2018 May 18 68 Mouse all Kidney - 16 details
Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis 29870722 2018 Jun 4 102 Human all Kidney - 22 details
Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development 30789893 2019 Feb 70 Human combined Kidney - 22 details
Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk 31118232 2019 Jun 12 105 Mouse all Kidney - 16 details
The single-cell transcriptomic landscape of early human diabetic nephropathy 31506348 2019 Sep 24 103 Human all Kidney - 12 details
Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney 31689386 2019 Nov 4 41 Mouse all Kidney - 31 details
Novel Human Kidney Cell Subsets Identified by Mux-Seq 9000000002 2020 Sep 110 Human all Kidney - 37 details
Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response 29980650 2018 Aug 36 Human Combined-Epithelia Kidney epithelium - 6 details
Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila 32900993 2020 Sep 8 84 Drosophila merged Lymph gland - 11 details
An abundant quiescent stem cell population in Drosophila Malpighian tubules protects principal cells from kidney stones 32175841 2020 Mar 16 7 Drosophila WT Malpighian Tubules - 5 details
A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation 31303374 2019 Sep 4 30 Human cluster Neocortex - 16 details
A single-cell atlas of the developing Drosophila ovary identifies follicle stem cell progenitors 31919193 2020 Feb 1 3 Drosophila low resolution Ovary - 7 details
A single-cell atlas of adult Drosophila ovary identifies transcriptional programs and somatic cell lineage regulating oogenesis 32339165 2020 Apr 76 Drosophila all Ovary - 32 details
A Single-Cell Atlas and Lineage Analysis of the Adult Drosophila Ovary 33159074 2020 Nov 6 93 Drosophila all Ovary - 26 details
Single-cell transcriptomic analysis of Alzheimer's disease 31042697 2019 Jun 104 Human all Prefrontal cortex - 40 details
Characterization of germ cell differentiation in the male mouse through single-cell RNA sequencing 29695820 2018 Apr 25 118 Mouse all Testis - 9 details
The adult human testis transcriptional cell atlas 30315278 2018 Dec 47 Human all Testis - 13 details
The Neonatal and Adult Human Testis Defined at the Single-Cell Level 30726734 2019 Feb 5 48 Human LowRes Adult Testis - 5 details
Unified single-cell analysis of testis gene regulation and pathology in five mouse strains 31237565 2019 Jun 25 94 Mouse all Testis - 32 details
Testis Single-Cell RNA-seq Reveals the Dynamics of De Novo Gene Transcription and Germline Mutational Bias in Drosophila 31418408 2019 Aug 16 58 Drosophila all Testis - 9 details
Gene expression atlas of a developing tissue by single cell expression correlation analysis 31363221 2019 Aug 106 Drosophila all Wing disc - 5 details
Single cell transcriptomic landscapes of pattern formation, proliferation and growth in Drosophila wing imaginal discs 31455604 2019 Sep 20 95 Drosophila all Wing disc - 6 details
A cell atlas of adult muscle precursors uncovers early events in fibre-type divergence in Drosophila 32815271 2020 Oct 5 107 Drosophila merged Wing disc - 26 details