Marker Genes
Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain
- tissue: Brain
- ontology: Brain
- genotype: Danio rerio TL/AB strain
- stage: 23-25 days post-fertlization (juvenile)
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 29608178
- subset name: all
- total genes: 3100
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE105010
Rows:63
| dataset id | cluster id | cluster name | cell type name | sample id | |
|---|---|---|---|---|---|
| 42 | 62 | aanat2+ neurons (pineal gland) | all | Details | |
| 42 | 13 | atf5b+ neurons | all | Details | |
| 42 | 21 | bnc2+_onecut1+ neurons | all | Details | |
| 42 | 57 | Cholinergic neurons | all | Details | |
| 42 | 56 | Cranial ganglion1 | all | Details | |
| 42 | 58 | Cranial ganglion2 | all | Details | |
| 42 | 60 | Cranial ganglion3 | all | Details | |
| 42 | 50 | Endothelial cells1 | all | Details | |
| 42 | 59 | Endothelial cells2 | all | Details | |
| 42 | 49 | eomesa+ pallium neurons | all | Details | |
| 42 | 40 | Ependymal cells | all | Details | |
| 42 | 46 | Erythrocytes | all | Details | |
| 42 | 20 | fezf1+_otpa+ neurons | all | Details | |
| 42 | 23 | GABAergic hindbrain neurons | all | Details | |
| 42 | 10 | GABAergic optic tectum neurons1 | all | Details | |
| 42 | 11 | GABAergic optic tectum neurons2 | all | Details | |
| 42 | 7 | GABAergic optic tectum neurons3 | all | Details | |
| 42 | 9 | GABAergic optic tectum neurons4 | all | Details | |
| 42 | 15 | GABAergic subpallium neurons | all | Details | |
| 42 | 42 | Glutamergic neurons (telencephalon) | all | Details | |
| 42 | 34 | gng8+ neurons (dorsal habenula) | all | Details | |
| 42 | 1 | Granule cell neurons1 | all | Details | |
| 42 | 26 | Granule cell neurons2 | all | Details | |
| 42 | 41 | Granule cell neurons3 | all | Details | |
| 42 | 6 | Granule cell neurons4 | all | Details | |
| 42 | 28 | hmx3a+_hmx2+ neurons | all | Details | |
| 42 | 52 | kiss1+ neurons (ventral habenula) | all | Details | |
| 42 | 39 | Microglia | all | Details | |
| 42 | 0 | Nascent forebrain neurons | all | Details | |
| 42 | 14 | nefma+ glutamergic neurons (midbrain) | all | Details | |
| 42 | 36 | Oligodendrocyte precursor cells | all | Details | |
| 42 | 45 | Oligodendrocytes1 | all | Details | |
| 42 | 47 | Oligodendrocytes2 | all | Details | |
| 42 | 55 | Optic tectum neurons | all | Details | |
| 42 | 30 | penkb+ neurons | all | Details | |
| 42 | 54 | Perivascular FGP cells | all | Details | |
| 42 | 29 | phox2+ hindbrain neurons | all | Details | |
| 42 | 35 | pitx2+ neurons1 | all | Details | |
| 42 | 38 | pitx2+ neurons2 | all | Details | |
| 42 | 4 | pou4f2+_barhl1a+ neurons | all | Details | |
| 42 | 37 | prdx1+ neurons | all | Details | |
| 42 | 17 | Progenitor cells1 | all | Details | |
| 42 | 19 | Progenitor cells2 | all | Details | |
| 42 | 22 | Progenitor cells3 | all | Details | |
| 42 | 44 | Progenitor cells4 | all | Details | |
| 42 | 8 | Progenitor cells5 | all | Details | |
| 42 | 43 | Purkinje neurons | all | Details | |
| 42 | 25 | Radial glia cells (progenitors)1 | all | Details | |
| 42 | 33 | Radial glia cells (progenitors)2 | all | Details | |
| 42 | 48 | Radial glia cells (progenitors)3 | all | Details | |
| 42 | 12 | rtn4rl2b+ eomesa+ pallium neurons | all | Details | |
| 42 | 32 | rtn4rl2b+ pallium neurons | all | Details | |
| 42 | 53 | sst1.1+_npy+ neurons | all | Details | |
| 42 | 27 | sst3+ neurons | all | Details | |
| 42 | 61 | Statoacoustic ganglion | all | Details | |
| 42 | 51 | T-cells/immune cells | all | Details | |
| 42 | 3 | tcf7I2+_barhl2+ neurons | all | Details | |
| 42 | 16 | tfap2b+_barhl2+ midbrain neurons | all | Details | |
| 42 | 18 | Torus Longitudinalis neurons1 | all | Details | |
| 42 | 5 | Torus Longitudinalis neurons2 | all | Details | |
| 42 | 24 | Unclassified neurons1 | all | Details | |
| 42 | 31 | Unclassified neurons2 | all | Details | |
| 42 | 2 | Ventral forebrain neurons | all | Details |