Marker Genes

Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

  • tissue: Brain
  • ontology: Brain
  • genotype: Danio rerio TL/AB strain
  • stage: 23-25 days post-fertlization (juvenile)
  • treatment condition: WT

Rows:68
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
42 15 GABAergic subpallium neurons all dlx2a 30574 ZDB-GENE-980526-212 0.59 0.03 0
42 15 GABAergic subpallium neurons all dlx5a 30569 ZDB-GENE-990415-49 0.67 0.04 0
42 15 GABAergic subpallium neurons all dlx6a 30586 ZDB-GENE-980526-448 0.3 0.02 0
42 15 GABAergic subpallium neurons all dlx1a 30568 ZDB-GENE-990415-48 0.34 0.02 0
42 15 GABAergic subpallium neurons all lhx6 445565 ZDB-GENE-041025-1 0.2 0.02 9.12e-289
42 15 GABAergic subpallium neurons all tmsb 402820 ZDB-GENE-050307-5 0.77 0.38 1.65e-273
42 15 GABAergic subpallium neurons all foxg1a 30274 ZDB-GENE-990415-267 0.31 0.05 1.65e-263
42 15 GABAergic subpallium neurons all si:ch211-222l21.1 795027 ZDB-GENE-030131-247 0.96 0.76 2.68e-220
42 15 GABAergic subpallium neurons all tubb5 386701 ZDB-GENE-031110-4 0.9 0.6 4.78e-220
42 15 GABAergic subpallium neurons all cd99l2 323266 ZDB-GENE-030131-1986 0.87 0.63 2.97e-185
42 15 GABAergic subpallium neurons all sox4a 336346 ZDB-GENE-030131-8290 0.74 0.42 6.38e-170
42 15 GABAergic subpallium neurons all BX957331.1 NULL 0.23 0.52 1.34e-148
42 15 GABAergic subpallium neurons all six3a 30635 ZDB-GENE-990415-127 0.19 0.03 2.6e-145
42 15 GABAergic subpallium neurons all neurod1 30169 ZDB-GENE-990415-172 0.06 0.3 3.96e-145
42 15 GABAergic subpallium neurons all isl1 30147 ZDB-GENE-980526-112 0.18 0.02 1.06e-144
42 15 GABAergic subpallium neurons all gad2 550403 ZDB-GENE-030909-9 0.61 0.31 3.1e-131
42 15 GABAergic subpallium neurons all elavl3 30732 ZDB-GENE-980526-76 0.88 0.73 6.88e-126
42 15 GABAergic subpallium neurons all calm1a 406660 ZDB-GENE-030131-8308 0.53 0.71 1.53e-121
42 15 GABAergic subpallium neurons all slc32a1 798575 ZDB-GENE-061201-1 0.43 0.18 1.04e-115
42 15 GABAergic subpallium neurons all aldocb 369193 ZDB-GENE-030821-1 0.35 0.58 2.49e-109
42 15 GABAergic subpallium neurons all mab21l1 246091 ZDB-GENE-020516-1 0.02 0.21 2.73e-104
42 15 GABAergic subpallium neurons all tuba1a 573216 ZDB-GENE-090507-4 0.9 0.74 2.47e-99
42 15 GABAergic subpallium neurons all atp2b4 768304 ZDB-GENE-061027-60 0.18 0.41 1.04e-93
42 15 GABAergic subpallium neurons all marcksb 323201 ZDB-GENE-030131-1921 0.88 0.71 1.28e-92
42 15 GABAergic subpallium neurons all si:ch211-195b15.8 558079 ZDB-GENE-131127-627 0.5 0.32 4.89e-90
42 15 GABAergic subpallium neurons all nrn1a 436780 ZDB-GENE-040718-212 0.02 0.19 1.7e-87
42 15 GABAergic subpallium neurons all dpysl3 553166 ZDB-GENE-050720-2 0.79 0.6 2.81e-87
42 15 GABAergic subpallium neurons all ndrg3a 30286 ZDB-GENE-980526-124 0.24 0.43 2.42e-85
42 15 GABAergic subpallium neurons all adcyap1b 335625 ZDB-GENE-041010-89 0.05 0.22 1.22e-84
42 15 GABAergic subpallium neurons all zbtb18 100003157 ZDB-GENE-050419-73 0.14 0.32 1.17e-83
42 15 GABAergic subpallium neurons all hapln1a 493635 ZDB-GENE-050302-175 0.3 0.12 1.22e-83
42 15 GABAergic subpallium neurons all zfhx3 100333211 ZDB-GENE-030131-7577 0.44 0.25 3.58e-83
42 15 GABAergic subpallium neurons all marcksl1a 406407 ZDB-GENE-040426-2146 0.82 0.64 7.43e-83
42 15 GABAergic subpallium neurons all atp1b2a 64269 ZDB-GENE-001127-2 0.45 0.61 3.25e-81
42 15 GABAergic subpallium neurons all sypb 436774 ZDB-GENE-040718-205 0.2 0.39 1.11e-80
42 15 GABAergic subpallium neurons all ebf3a 567751 ZDB-GENE-070112-292 0.06 0.23 1.86e-77
42 15 GABAergic subpallium neurons all sh3gl2a 394091 ZDB-GENE-040121-3 0.1 0.28 2.62e-75
42 15 GABAergic subpallium neurons all c1qtnf4 550397 ZDB-GENE-050417-198 0.09 0.27 6.17e-74
42 15 GABAergic subpallium neurons all zfhx4 556453 ZDB-GENE-070530-3 0.39 0.22 4.69e-72
42 15 GABAergic subpallium neurons all dnajb5 569466 ZDB-GENE-070705-308 0.14 0.31 4.57e-70
42 15 GABAergic subpallium neurons all eno1a 334116 ZDB-GENE-030131-6048 0.31 0.51 4.02e-69
42 15 GABAergic subpallium neurons all laptm4b 368911 ZDB-GENE-030616-616 0.2 0.39 6.05e-68
42 15 GABAergic subpallium neurons all pygmb 393444 ZDB-GENE-040426-1206 0.1 0.28 1.62e-67
42 15 GABAergic subpallium neurons all pgk1 406696 ZDB-GENE-040426-2711 0.19 0.39 1.58e-64
42 15 GABAergic subpallium neurons all celf3a 57922 ZDB-GENE-000501-2 0.5 0.31 3.19e-64
42 15 GABAergic subpallium neurons all pkma 335817 ZDB-GENE-031201-4 0.23 0.42 7.19e-62
42 15 GABAergic subpallium neurons all zc4h2 323487 ZDB-GENE-030131-2207 0.58 0.4 2.32e-61
42 15 GABAergic subpallium neurons all nptna 368305 ZDB-GENE-030804-7 0.14 0.32 6.87e-61
42 15 GABAergic subpallium neurons all cnp 325896 ZDB-GENE-030521-29 0.48 0.29 2.47e-59
42 15 GABAergic subpallium neurons all si:ch211-288g17.3 567638 ZDB-GENE-030131-461 0.72 0.56 1.67e-57
42 15 GABAergic subpallium neurons all tuba1b 373080 ZDB-GENE-030822-1 0.36 0.19 2.67e-57
42 15 GABAergic subpallium neurons all bhlhe40 324413 ZDB-GENE-030131-3133 0.09 0.25 3.55e-55
42 15 GABAergic subpallium neurons all atp2b2 557430 ZDB-GENE-061016-1 0.15 0.31 3.2e-54
42 15 GABAergic subpallium neurons all ccng1 171473 ZDB-GENE-020322-1 0.16 0.32 9.73e-53
42 15 GABAergic subpallium neurons all ppp1r14ba 564838 ZDB-GENE-060825-331 0.36 0.19 7.3e-52
42 15 GABAergic subpallium neurons all ndufa4 406298 ZDB-GENE-040426-1962 0.16 0.33 2.16e-50
42 15 GABAergic subpallium neurons all fscn1a 558271 ZDB-GENE-031009-1 0.43 0.27 6.28e-50
42 15 GABAergic subpallium neurons all egr1 30498 ZDB-GENE-980526-320 0.15 0.3 8.02e-49
42 15 GABAergic subpallium neurons all si:dkey-177p2.6 568712 ZDB-GENE-030131-5926 0.23 0.42 8.5e-49
42 15 GABAergic subpallium neurons all tmlhe 555271 ZDB-GENE-091204-144 0.14 0.3 5.85e-47
42 15 GABAergic subpallium neurons all rbfox1 449554 ZDB-GENE-040927-11 0.17 0.33 6.09e-46
42 15 GABAergic subpallium neurons all gpia 246094 ZDB-GENE-020513-2 0.21 0.37 1.65e-43
42 15 GABAergic subpallium neurons all syt11a 406769 ZDB-GENE-040426-2815 0.36 0.51 4.12e-42
42 15 GABAergic subpallium neurons all cst3 791878 ZDB-GENE-030131-373 0.19 0.35 8.45e-42
42 15 GABAergic subpallium neurons all zgc:56493 336637 ZDB-GENE-030131-8581 0.23 0.38 6.97e-40
42 15 GABAergic subpallium neurons all gap43 30608 ZDB-GENE-990415-87 0.58 0.43 1.16e-38
42 15 GABAergic subpallium neurons all gadd45ba 406304 ZDB-GENE-040426-1971 0.33 0.49 1.36e-35
42 15 GABAergic subpallium neurons all pabpc1b 393856 ZDB-GENE-050308-1 0.19 0.34 2.94e-35