Marker Genes
Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain
- tissue: Brain
- ontology: Brain
- genotype: Danio rerio TL/AB strain
- stage: 23-25 days post-fertlization (juvenile)
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 29608178
- subset name: all
- total genes: 3100
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE105010
Rows:59
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
42 | 0 | Nascent forebrain neurons | all | eomesa | 64603 | ZDB-GENE-001228-1 | 0.3 | 0.05 | 0 | |||
42 | 0 | Nascent forebrain neurons | all | tubb5 | 386701 | ZDB-GENE-031110-4 | 0.91 | 0.59 | 0 | |||
42 | 0 | Nascent forebrain neurons | all | tbr1b | 58042 | ZDB-GENE-000323-1 | 0.32 | 0.03 | 0 | |||
42 | 0 | Nascent forebrain neurons | all | neurod6b | 114415 | ZDB-GENE-010608-2 | 0.37 | 0.09 | 0 | |||
42 | 0 | Nascent forebrain neurons | all | tuba1a | 573216 | ZDB-GENE-090507-4 | 0.91 | 0.74 | 0 | |||
42 | 0 | Nascent forebrain neurons | all | cd99l2 | 323266 | ZDB-GENE-030131-1986 | 0.88 | 0.62 | 0 | |||
42 | 0 | Nascent forebrain neurons | all | bhlhe22 | 393930 | ZDB-GENE-040426-1411 | 0.34 | 0.09 | 2.54516408122455e-310 | |||
42 | 0 | Nascent forebrain neurons | all | maptb | 567833 | ZDB-GENE-081027-2 | 0.86 | 0.67 | 1.28e-304 | |||
42 | 0 | Nascent forebrain neurons | all | nr2f2 | 30424 | ZDB-GENE-990415-252 | 0.4 | 0.14 | 2.25e-302 | |||
42 | 0 | Nascent forebrain neurons | all | si:ch211-222l21.1 | 795027 | ZDB-GENE-030131-247 | 0.92 | 0.76 | 2.25e-298 | |||
42 | 0 | Nascent forebrain neurons | all | aldocb | 369193 | ZDB-GENE-030821-1 | 0.34 | 0.58 | 1.37e-272 | |||
42 | 0 | Nascent forebrain neurons | all | zbtb18 | 100003157 | ZDB-GENE-050419-73 | 0.53 | 0.3 | 1.46e-260 | |||
42 | 0 | Nascent forebrain neurons | all | dpysl3 | 553166 | ZDB-GENE-050720-2 | 0.81 | 0.6 | 1.78e-255 | |||
42 | 0 | Nascent forebrain neurons | all | gap43 | 30608 | ZDB-GENE-990415-87 | 0.69 | 0.42 | 2.35e-247 | |||
42 | 0 | Nascent forebrain neurons | all | ppp1r14ba | 564838 | ZDB-GENE-060825-331 | 0.45 | 0.18 | 1.14e-243 | |||
42 | 0 | Nascent forebrain neurons | all | r3hdm1 | 110437712 | NULL | 0.7 | 0.48 | 2.52e-241 | |||
42 | 0 | Nascent forebrain neurons | all | BX957331.1 | NULL | 0.3 | 0.53 | 1.16e-240 | ||||
42 | 0 | Nascent forebrain neurons | all | tmsb | 402820 | ZDB-GENE-050307-5 | 0.65 | 0.37 | 2.54e-237 | |||
42 | 0 | Nascent forebrain neurons | all | rps8a | 407690 | ZDB-GENE-030131-8626 | 0.9 | 0.75 | 5.78e-222 | |||
42 | 0 | Nascent forebrain neurons | all | marcksb | 323201 | ZDB-GENE-030131-1921 | 0.87 | 0.7 | 1.3e-208 | |||
42 | 0 | Nascent forebrain neurons | all | nr2f1a | 30418 | ZDB-GENE-980526-115 | 0.34 | 0.13 | 1.44e-207 | |||
42 | 0 | Nascent forebrain neurons | all | dclk1b | 100151759 | ZDB-GENE-080516-7 | 0.61 | 0.41 | 1.92e-194 | |||
42 | 0 | Nascent forebrain neurons | all | vim | 140599 | ZDB-GENE-011212-3 | 0.3 | 0.12 | 7.32e-188 | |||
42 | 0 | Nascent forebrain neurons | all | cnp | 325896 | ZDB-GENE-030521-29 | 0.52 | 0.28 | 2.46e-179 | |||
42 | 0 | Nascent forebrain neurons | all | snap25b | 30711 | ZDB-GENE-980526-392 | 0.25 | 0.43 | 2.43e-178 | |||
42 | 0 | Nascent forebrain neurons | all | sox4a | 336346 | ZDB-GENE-030131-8290 | 0.66 | 0.42 | 9.53e-176 | |||
42 | 0 | Nascent forebrain neurons | all | jpt1b | 402906 | ZDB-GENE-030131-2784 | 0.65 | 0.46 | 3.54e-165 | |||
42 | 0 | Nascent forebrain neurons | all | rps9 | 114420 | ZDB-GENE-010724-15 | 0.86 | 0.7 | 8.51e-157 | |||
42 | 0 | Nascent forebrain neurons | all | slc6a1b | 492490 | ZDB-GENE-041114-57 | 0.15 | 0.32 | 9.59e-156 | |||
42 | 0 | Nascent forebrain neurons | all | stmn2b | 100003563 | ZDB-GENE-050522-207 | 0.66 | 0.48 | 3.28e-155 | |||
42 | 0 | Nascent forebrain neurons | all | rps12 | 337007 | ZDB-GENE-030131-8951 | 0.85 | 0.7 | 6.2e-155 | |||
42 | 0 | Nascent forebrain neurons | all | grm2b | 564461 | ZDB-GENE-060201-5 | 0.25 | 0.09 | 3.36e-153 | |||
42 | 0 | Nascent forebrain neurons | all | pygmb | 393444 | ZDB-GENE-040426-1206 | 0.09 | 0.28 | 3.25e-150 | |||
42 | 0 | Nascent forebrain neurons | all | rps6 | 445028 | ZDB-GENE-040801-8 | 0.84 | 0.68 | 5.94e-147 | |||
42 | 0 | Nascent forebrain neurons | all | ndrg3a | 30286 | ZDB-GENE-980526-124 | 0.25 | 0.44 | 1.21e-145 | |||
42 | 0 | Nascent forebrain neurons | all | eno1a | 334116 | ZDB-GENE-030131-6048 | 0.32 | 0.51 | 2.8e-142 | |||
42 | 0 | Nascent forebrain neurons | all | tuba1b | 373080 | ZDB-GENE-030822-1 | 0.39 | 0.19 | 2.12e-141 | |||
42 | 0 | Nascent forebrain neurons | all | eef1g | 195822 | ZDB-GENE-020423-3 | 0.8 | 0.63 | 5.81e-141 | |||
42 | 0 | Nascent forebrain neurons | all | sypb | 436774 | ZDB-GENE-040718-205 | 0.22 | 0.4 | 4.03e-138 | |||
42 | 0 | Nascent forebrain neurons | all | atp2b4 | 768304 | ZDB-GENE-061027-60 | 0.23 | 0.42 | 2.85e-136 | |||
42 | 0 | Nascent forebrain neurons | all | rplp2l | 558312 | ZDB-GENE-070327-2 | 0.77 | 0.58 | 1.3e-135 | |||
42 | 0 | Nascent forebrain neurons | all | lrp8 | 557734 | ZDB-GENE-050506-134 | 0.33 | 0.16 | 1.37e-132 | |||
42 | 0 | Nascent forebrain neurons | all | sh3gl2a | 394091 | ZDB-GENE-040121-3 | 0.11 | 0.29 | 4.74e-129 | |||
42 | 0 | Nascent forebrain neurons | all | zfpm2a | 568996 | ZDB-GENE-060130-4 | 0.34 | 0.17 | 1.89e-128 | |||
42 | 0 | Nascent forebrain neurons | all | draxin | 619245 | ZDB-GENE-050913-20 | 0.35 | 0.18 | 2.6e-123 | |||
42 | 0 | Nascent forebrain neurons | all | rpl27 | 325618 | ZDB-GENE-030131-4343 | 0.81 | 0.66 | 2.47e-111 | |||
42 | 0 | Nascent forebrain neurons | all | pkma | 335817 | ZDB-GENE-031201-4 | 0.26 | 0.43 | 3.61e-108 | |||
42 | 0 | Nascent forebrain neurons | all | rpl5b | 415196 | ZDB-GENE-040625-93 | 0.75 | 0.59 | 1.26e-107 | |||
42 | 0 | Nascent forebrain neurons | all | tuba2 | 406303 | ZDB-GENE-040426-1970 | 0.75 | 0.6 | 1.13e-101 | |||
42 | 0 | Nascent forebrain neurons | all | fscn1a | 558271 | ZDB-GENE-031009-1 | 0.44 | 0.27 | 1.19e-100 | |||
42 | 0 | Nascent forebrain neurons | all | islr2 | 541396 | ZDB-GENE-050320-95 | 0.48 | 0.3 | 1.21e-99 | |||
42 | 0 | Nascent forebrain neurons | all | tuba8l4 | 393154 | ZDB-GENE-040426-860 | 0.64 | 0.47 | 2.16e-99 | |||
42 | 0 | Nascent forebrain neurons | all | atp2b3a | 436745 | ZDB-GENE-040718-174 | 0.21 | 0.38 | 1.57e-98 | |||
42 | 0 | Nascent forebrain neurons | all | cst3 | 791878 | ZDB-GENE-030131-373 | 0.18 | 0.35 | 4.09e-93 | |||
42 | 0 | Nascent forebrain neurons | all | gadd45ba | 406304 | ZDB-GENE-040426-1971 | 0.32 | 0.49 | 4.89e-92 | |||
42 | 0 | Nascent forebrain neurons | all | zc4h2 | 323487 | ZDB-GENE-030131-2207 | 0.58 | 0.4 | 2.09e-90 | |||
42 | 0 | Nascent forebrain neurons | all | itm2ba | 323632 | ZDB-GENE-030131-2352 | 0.21 | 0.38 | 2.25e-89 | |||
42 | 0 | Nascent forebrain neurons | all | rps17 | 393818 | ZDB-GENE-040426-1852 | 0.64 | 0.46 | 1.04e-88 | |||
42 | 0 | Nascent forebrain neurons | all | mllt11 | 563531 | ZDB-GENE-030131-3007 | 0.7 | 0.54 | 1.61e-87 |