Marker Genes

Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

  • tissue: Brain
  • ontology: Brain
  • genotype: Danio rerio TL/AB strain
  • stage: 23-25 days post-fertlization (juvenile)
  • treatment condition: WT

Rows:129
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
42 41 Granule cell neurons3 all zic2a 58077 ZDB-GENE-000710-4 0.95 0.3 1.35e-254
42 41 Granule cell neurons3 all gjd1a 572372 ZDB-GENE-080723-77 0.64 0.15 1.5e-233
42 41 Granule cell neurons3 all eomesa 64603 ZDB-GENE-001228-1 0.59 0.06 9.89e-187
42 41 Granule cell neurons3 all uts1 563732 ZDB-GENE-041014-348 0.31 0.01 3.73e-155
42 41 Granule cell neurons3 all en2b 30238 ZDB-GENE-980526-40 0.58 0.1 1.5e-152
42 41 Granule cell neurons3 all tjp1a 378845 ZDB-GENE-031001-2 0.45 0.1 1.53e-138
42 41 Granule cell neurons3 all nefma 553718 ZDB-GENE-050522-205 0.39 0.05 3.53e-136
42 41 Granule cell neurons3 all tlx3b 266965 ZDB-GENE-021021-1 0.37 0.03 4.03e-133
42 41 Granule cell neurons3 all nat8l 564754 ZDB-GENE-030729-4 0.79 0.43 7.82e-131
42 41 Granule cell neurons3 all gadd45ab 431763 ZDB-GENE-040704-60 0.35 0.03 1.51e-125
42 41 Granule cell neurons3 all neto1l 100331363 ZDB-GENE-091207-1 0.38 0.04 4.34e-121
42 41 Granule cell neurons3 all slc17a6b 100149756 ZDB-GENE-030616-554 0.57 0.16 1.82e-115
42 41 Granule cell neurons3 all dachc 692255 ZDB-GENE-020402-5 0.43 0.05 3.15e-113
42 41 Granule cell neurons3 all lmo4a 114412 ZDB-GENE-010702-1 0.46 0.07 5.76e-111
42 41 Granule cell neurons3 all zic5 403041 ZDB-GENE-040622-1 0.65 0.17 1.31e-105
42 41 Granule cell neurons3 all tcima 541345 ZDB-GENE-050320-36 0.5 0.13 1.66e-86
42 41 Granule cell neurons3 all cbln1 436793 ZDB-GENE-040718-226 0.42 0.08 4.33e-83
42 41 Granule cell neurons3 all en1b 541371 ZDB-GENE-980526-6 0.4 0.07 1.24e-78
42 41 Granule cell neurons3 all elavl4 30737 ZDB-GENE-990415-246 0.9 0.58 4.65e-78
42 41 Granule cell neurons3 all scrt1b 541533 ZDB-GENE-050327-72 0.36 0.06 2.14e-75
42 41 Granule cell neurons3 all otofa 557476 ZDB-GENE-030131-7778 0.33 0.05 7.18e-75
42 41 Granule cell neurons3 all mstnb 798441 ZDB-GENE-990415-165 0.31 0.04 7.91e-72
42 41 Granule cell neurons3 all zgc:65851 321113 ZDB-GENE-030131-9669 0.29 0.06 9.67e-69
42 41 Granule cell neurons3 all map1b 559032 ZDB-GENE-130530-690 0.52 0.19 1.3e-67
42 41 Granule cell neurons3 all BX957331.1 NULL 0.78 0.51 1.61e-66
42 41 Granule cell neurons3 all scg2b 777641 ZDB-GENE-061103-160 0.58 0.3 7.65e-63
42 41 Granule cell neurons3 all en2a 30243 ZDB-GENE-980526-167 0.38 0.09 1.38e-60
42 41 Granule cell neurons3 all baiap2b 100537012 ZDB-GENE-100812-7 0.33 0.07 1.41e-60
42 41 Granule cell neurons3 all zbtb7c 100537080 NULL 0.19 0.03 3.71e-60
42 41 Granule cell neurons3 all si:dkey-7j14.5 556563 ZDB-GENE-030131-8110 0.47 0.2 1.83e-59
42 41 Granule cell neurons3 all si:ch211-277g23.5 335995 ZDB-LINCRNAG-030131-7938 0.24 0.04 4.67e-56
42 41 Granule cell neurons3 all cdk15 791619 ZDB-GENE-060421-7193 0.32 0.1 7.42e-55
42 41 Granule cell neurons3 all gjd2b 378444 ZDB-GENE-030911-1 0.2 0.03 1.94e-53
42 41 Granule cell neurons3 all anxa13l 554118 ZDB-GENE-050522-310 0.2 0.02 2.29e-52
42 41 Granule cell neurons3 all gpm6ab 407734 ZDB-GENE-030710-8 0.59 0.81 4.95e-52
42 41 Granule cell neurons3 all si:dkey-33c12.3 335380 ZDB-GENE-030131-7320 0.49 0.28 9.92e-50
42 41 Granule cell neurons3 all tmem178 767702 ZDB-GENE-060929-756 0.39 0.12 8.56e-47
42 41 Granule cell neurons3 all si:ch73-119p20.1 100334146 ZDB-GENE-141216-395 0.53 0.28 2.13e-45
42 41 Granule cell neurons3 all neurod1 30169 ZDB-GENE-990415-172 0.61 0.29 2.5e-44
42 41 Granule cell neurons3 all si:dkey-238f9.1 100333587 ZDB-GENE-091204-297 0.26 0.06 5.89e-42
42 41 Granule cell neurons3 all egr1 30498 ZDB-GENE-980526-320 0.59 0.3 1.69e-41
42 41 Granule cell neurons3 all si:ch73-305o9.3 ZDB-GENE-141216-475 0.25 0.06 2.38e-41
42 41 Granule cell neurons3 all PRIMA1 NULL 0.2 0.04 2.41e-39
42 41 Granule cell neurons3 all mafba 30210 ZDB-GENE-980526-515 0.23 0.05 5.35e-39
42 41 Granule cell neurons3 all vamp1 406707 ZDB-GENE-040426-2725 0.35 0.17 4.74e-38
42 41 Granule cell neurons3 all stmn4 406710 ZDB-GENE-040426-2732 0.81 0.53 6.73e-38
42 41 Granule cell neurons3 all marcksl1a 406407 ZDB-GENE-040426-2146 0.34 0.65 7.42e-38
42 41 Granule cell neurons3 all tmem59l 406646 ZDB-GENE-040426-2651 0.68 0.46 1.06e-36
42 41 Granule cell neurons3 all gdpd5b 560645 ZDB-GENE-030131-6028 0.31 0.1 8.8e-36
42 41 Granule cell neurons3 all gria4a 407735 ZDB-GENE-020125-7 0.27 0.07 1.79e-35
42 41 Granule cell neurons3 all auts2b 100150849 ZDB-GENE-131127-20 0.2 0.04 2.58e-35
42 41 Granule cell neurons3 all grb2b 406308 ZDB-GENE-040426-1975 0.48 0.24 2.38e-33
42 41 Granule cell neurons3 all foxo1a 768121 ZDB-GENE-061013-59 0.23 0.07 5.47e-33
42 41 Granule cell neurons3 all tob1b 406245 ZDB-GENE-040426-2151 0.63 0.44 9.32e-32
42 41 Granule cell neurons3 all dst 100333215 ZDB-GENE-030131-3399 0.3 0.11 9.79e-32
42 41 Granule cell neurons3 all lhx1a 30463 ZDB-GENE-980526-347 0.26 0.07 1.8e-31
42 41 Granule cell neurons3 all hsp70l 560210 ZDB-GENE-050321-1 0.61 0.82 2.11e-31
42 41 Granule cell neurons3 all kcnma1a 568554 ZDB-GENE-070202-9 0.43 0.21 1.23e-30
42 41 Granule cell neurons3 all sh3gl3a 571626 ZDB-GENE-070112-242 0.47 0.27 1.45e-30
42 41 Granule cell neurons3 all iqsec2b 797187 ZDB-GENE-081105-73 0.35 0.14 2.32e-30
42 41 Granule cell neurons3 all zbtb18 100003157 ZDB-GENE-050419-73 0.57 0.31 6.17e-30
42 41 Granule cell neurons3 all marcksl1b 406504 ZDB-GENE-040426-2315 0.69 0.87 1.29e-29
42 41 Granule cell neurons3 all pcp4l1 100008021 ZDB-GENE-040724-35 0.49 0.26 2.29e-29
42 41 Granule cell neurons3 all mbnl3 567027 ZDB-GENE-081002-3 0.36 0.17 2.58e-29
42 41 Granule cell neurons3 all cntn1b 541474 ZDB-GENE-041210-236 0.22 0.07 8.59e-29
42 41 Granule cell neurons3 all ntng1a 569075 ZDB-GENE-091118-13 0.22 0.06 1.1e-28
42 41 Granule cell neurons3 all tmlhe 555271 ZDB-GENE-091204-144 0.07 0.29 3.19e-28
42 41 Granule cell neurons3 all esrrga 405890 ZDB-GENE-030821-2 0.22 0.06 5.66e-28
42 41 Granule cell neurons3 all prr18 101885898 ZDB-GENE-081107-6 0.34 0.15 8.49e-28
42 41 Granule cell neurons3 all grm2b 564461 ZDB-GENE-060201-5 0.28 0.1 3.23e-27
42 41 Granule cell neurons3 all nebl 541446 ZDB-GENE-050320-151 0.27 0.08 3.71e-27
42 41 Granule cell neurons3 all tshz1 369196 ZDB-GENE-030820-3 0.35 0.14 8.28e-27
42 41 Granule cell neurons3 all elmo1 406364 ZDB-GENE-040426-2069 0.59 0.37 1.17e-26
42 41 Granule cell neurons3 all glula 100000775 ZDB-GENE-030131-688 0.12 0.3 1.7e-26
42 41 Granule cell neurons3 all hmgn2 569904 ZDB-GENE-051030-81 0.41 0.6 2.74e-26
42 41 Granule cell neurons3 all mdkb 65231 ZDB-GENE-010131-6 0.43 0.61 5.03e-26
42 41 Granule cell neurons3 all srrm4 796574 ZDB-GENE-050208-34 0.41 0.23 5.05e-26
42 41 Granule cell neurons3 all ppp1cb 100003223 ZDB-GENE-030616-609 0.56 0.38 8.12e-26
42 41 Granule cell neurons3 all klc2 562365 ZDB-GENE-030131-2670 0.5 0.32 3.26e-25
42 41 Granule cell neurons3 all zfhx4 556453 ZDB-GENE-070530-3 0.07 0.23 3.74e-25
42 41 Granule cell neurons3 all slc6a1a 692318 ZDB-GENE-060519-23 0.04 0.21 1.12e-24
42 41 Granule cell neurons3 all btg1 114432 ZDB-GENE-010726-1 0.67 0.52 6.43e-24
42 41 Granule cell neurons3 all si:dkeyp-75h12.5 566718 ZDB-GENE-030131-7914 0.59 0.39 6.93e-24
42 41 Granule cell neurons3 all slc6a1b 492490 ZDB-GENE-041114-57 0.14 0.31 7.83e-24
42 41 Granule cell neurons3 all camk2d2 436815 ZDB-GENE-040718-277 0.73 0.51 8.62e-24
42 41 Granule cell neurons3 all stmn2a 449651 ZDB-GENE-041010-85 0.81 0.61 1.08e-23
42 41 Granule cell neurons3 all mbnl2 560384 ZDB-GENE-030131-9582 0.38 0.2 1.65e-23
42 41 Granule cell neurons3 all maptb 567833 ZDB-GENE-081027-2 0.87 0.68 2.24e-23
42 41 Granule cell neurons3 all olfm1b 445092 ZDB-GENE-040801-228 0.25 0.4 3.81e-23
42 41 Granule cell neurons3 all tjp1b 565459 ZDB-GENE-070925-1 0.3 0.13 4.1e-23
42 41 Granule cell neurons3 all tuba2 406303 ZDB-GENE-040426-1970 0.8 0.61 8.9e-22
42 41 Granule cell neurons3 all tshz3b 565811 ZDB-GENE-100319-2 0.25 0.09 1.78e-21
42 41 Granule cell neurons3 all cdkn1ba 402862 ZDB-GENE-040812-3 0.28 0.11 1.97e-21
42 41 Granule cell neurons3 all rasgef1ba 327572 ZDB-GENE-030131-5783 0.3 0.13 2.01e-21
42 41 Granule cell neurons3 all clu 393775 ZDB-GENE-040426-1774 0.31 0.14 2.74e-21
42 41 Granule cell neurons3 all junba 407086 ZDB-GENE-040426-2172 0.47 0.27 3.62e-21
42 41 Granule cell neurons3 all dlg1 114446 ZDB-GENE-010724-8 0.31 0.14 4.07e-21
42 41 Granule cell neurons3 all slc32a1 798575 ZDB-GENE-061201-1 0.04 0.19 7.51e-21
42 41 Granule cell neurons3 all ctnnb1 30265 ZDB-GENE-980526-362 0.37 0.55 1.22e-20
42 41 Granule cell neurons3 all ldb2b 30578 ZDB-GENE-990415-137 0.07 0.23 1.7e-19
42 41 Granule cell neurons3 all si:ch211-222l21.1 795027 ZDB-GENE-030131-247 0.61 0.77 3.09e-19
42 41 Granule cell neurons3 all clstn2 100125749 ZDB-GENE-070911-2 0.36 0.18 4.07e-19
42 41 Granule cell neurons3 all cplx2l 436732 ZDB-GENE-040718-160 0.45 0.29 4.46e-19
42 41 Granule cell neurons3 all egr4 795099 ZDB-GENE-080204-90 0.59 0.37 5.82e-19
42 41 Granule cell neurons3 all nfia 556665 ZDB-GENE-050208-501 0.37 0.19 1.58e-18
42 41 Granule cell neurons3 all kcnc1a 565419 ZDB-GENE-061220-10 0.11 0.28 3.23e-18
42 41 Granule cell neurons3 all rgma 414272 ZDB-GENE-040527-1 0.29 0.13 4.08e-18
42 41 Granule cell neurons3 all hsp70.2 100535101 ZDB-GENE-110405-1 0.71 0.87 7.6e-18
42 41 Granule cell neurons3 all sesn1 436933 ZDB-GENE-040718-408 0.58 0.42 8.54e-18
42 41 Granule cell neurons3 all zic3 368263 ZDB-GENE-030708-2 0.09 0.26 2.85e-17
42 41 Granule cell neurons3 all si:dkey-85p17.3 100150414 ZDB-GENE-141219-8 0.34 0.19 4.83e-17
42 41 Granule cell neurons3 all sgk1 324140 ZDB-GENE-030131-2860 0.33 0.16 4.99e-17
42 41 Granule cell neurons3 all hsp70.1 100126123 ZDB-GENE-990415-91 0.63 0.8 7.25e-17
42 41 Granule cell neurons3 all adcyap1r1a 541315 ZDB-GENE-050315-1 0.19 0.35 1.68e-16
42 41 Granule cell neurons3 all jun 335916 ZDB-GENE-030131-7859 0.64 0.45 2.78e-16
42 41 Granule cell neurons3 all fosb 492346 ZDB-GENE-041114-181 0.43 0.25 4.04e-16
42 41 Granule cell neurons3 all hmgb1a 321622 ZDB-GENE-030131-341 0.51 0.68 9.85e-16
42 41 Granule cell neurons3 all klf6a 280650 ZDB-GENE-021115-9 0.07 0.23 2.01e-15
42 41 Granule cell neurons3 all sept3 554123 ZDB-GENE-050522-375 0.19 0.38 2.58e-15
42 41 Granule cell neurons3 all dnajb5 569466 ZDB-GENE-070705-308 0.48 0.3 5.31e-15
42 41 Granule cell neurons3 all cxxc5a 557911 ZDB-GENE-030131-3178 0.38 0.22 5.39e-15
42 41 Granule cell neurons3 all ndrg4 692305 ZDB-GENE-060512-226 0.76 0.6 1.09e-14
42 41 Granule cell neurons3 all map1ab 797545 ZDB-GENE-100426-3 0.6 0.43 1.08e-13
42 41 Granule cell neurons3 all ywhag2 560560 ZDB-GENE-061023-2 0.77 0.61 1.24e-12
42 41 Granule cell neurons3 all islr2 541396 ZDB-GENE-050320-95 0.48 0.31 3.66e-12
42 41 Granule cell neurons3 all gnao1a 393760 ZDB-GENE-040426-1757 0.44 0.6 8.65e-12
42 41 Granule cell neurons3 all pcsk1nl 570305 ZDB-GENE-090427-2 0.57 0.41 1.72e-11
42 41 Granule cell neurons3 all si:ch73-281n10.2 561719 ZDB-GENE-131120-172 0.29 0.45 2.15e-11
42 41 Granule cell neurons3 all ndufa4l 406726 ZDB-GENE-040426-2756 0.34 0.5 2.98e-10