Marker Genes
Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain
- tissue: Brain
- ontology: Brain
- genotype: Danio rerio TL/AB strain
- stage: 23-25 days post-fertlization (juvenile)
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 29608178
- subset name: all
- total genes: 3100
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE105010
Rows:129
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
42 | 41 | Granule cell neurons3 | all | zic2a | 58077 | ZDB-GENE-000710-4 | 0.95 | 0.3 | 1.35e-254 | |||
42 | 41 | Granule cell neurons3 | all | gjd1a | 572372 | ZDB-GENE-080723-77 | 0.64 | 0.15 | 1.5e-233 | |||
42 | 41 | Granule cell neurons3 | all | eomesa | 64603 | ZDB-GENE-001228-1 | 0.59 | 0.06 | 9.89e-187 | |||
42 | 41 | Granule cell neurons3 | all | uts1 | 563732 | ZDB-GENE-041014-348 | 0.31 | 0.01 | 3.73e-155 | |||
42 | 41 | Granule cell neurons3 | all | en2b | 30238 | ZDB-GENE-980526-40 | 0.58 | 0.1 | 1.5e-152 | |||
42 | 41 | Granule cell neurons3 | all | tjp1a | 378845 | ZDB-GENE-031001-2 | 0.45 | 0.1 | 1.53e-138 | |||
42 | 41 | Granule cell neurons3 | all | nefma | 553718 | ZDB-GENE-050522-205 | 0.39 | 0.05 | 3.53e-136 | |||
42 | 41 | Granule cell neurons3 | all | tlx3b | 266965 | ZDB-GENE-021021-1 | 0.37 | 0.03 | 4.03e-133 | |||
42 | 41 | Granule cell neurons3 | all | nat8l | 564754 | ZDB-GENE-030729-4 | 0.79 | 0.43 | 7.82e-131 | |||
42 | 41 | Granule cell neurons3 | all | gadd45ab | 431763 | ZDB-GENE-040704-60 | 0.35 | 0.03 | 1.51e-125 | |||
42 | 41 | Granule cell neurons3 | all | neto1l | 100331363 | ZDB-GENE-091207-1 | 0.38 | 0.04 | 4.34e-121 | |||
42 | 41 | Granule cell neurons3 | all | slc17a6b | 100149756 | ZDB-GENE-030616-554 | 0.57 | 0.16 | 1.82e-115 | |||
42 | 41 | Granule cell neurons3 | all | dachc | 692255 | ZDB-GENE-020402-5 | 0.43 | 0.05 | 3.15e-113 | |||
42 | 41 | Granule cell neurons3 | all | lmo4a | 114412 | ZDB-GENE-010702-1 | 0.46 | 0.07 | 5.76e-111 | |||
42 | 41 | Granule cell neurons3 | all | zic5 | 403041 | ZDB-GENE-040622-1 | 0.65 | 0.17 | 1.31e-105 | |||
42 | 41 | Granule cell neurons3 | all | tcima | 541345 | ZDB-GENE-050320-36 | 0.5 | 0.13 | 1.66e-86 | |||
42 | 41 | Granule cell neurons3 | all | cbln1 | 436793 | ZDB-GENE-040718-226 | 0.42 | 0.08 | 4.33e-83 | |||
42 | 41 | Granule cell neurons3 | all | en1b | 541371 | ZDB-GENE-980526-6 | 0.4 | 0.07 | 1.24e-78 | |||
42 | 41 | Granule cell neurons3 | all | elavl4 | 30737 | ZDB-GENE-990415-246 | 0.9 | 0.58 | 4.65e-78 | |||
42 | 41 | Granule cell neurons3 | all | scrt1b | 541533 | ZDB-GENE-050327-72 | 0.36 | 0.06 | 2.14e-75 | |||
42 | 41 | Granule cell neurons3 | all | otofa | 557476 | ZDB-GENE-030131-7778 | 0.33 | 0.05 | 7.18e-75 | |||
42 | 41 | Granule cell neurons3 | all | mstnb | 798441 | ZDB-GENE-990415-165 | 0.31 | 0.04 | 7.91e-72 | |||
42 | 41 | Granule cell neurons3 | all | zgc:65851 | 321113 | ZDB-GENE-030131-9669 | 0.29 | 0.06 | 9.67e-69 | |||
42 | 41 | Granule cell neurons3 | all | map1b | 559032 | ZDB-GENE-130530-690 | 0.52 | 0.19 | 1.3e-67 | |||
42 | 41 | Granule cell neurons3 | all | BX957331.1 | NULL | 0.78 | 0.51 | 1.61e-66 | ||||
42 | 41 | Granule cell neurons3 | all | scg2b | 777641 | ZDB-GENE-061103-160 | 0.58 | 0.3 | 7.65e-63 | |||
42 | 41 | Granule cell neurons3 | all | en2a | 30243 | ZDB-GENE-980526-167 | 0.38 | 0.09 | 1.38e-60 | |||
42 | 41 | Granule cell neurons3 | all | baiap2b | 100537012 | ZDB-GENE-100812-7 | 0.33 | 0.07 | 1.41e-60 | |||
42 | 41 | Granule cell neurons3 | all | zbtb7c | 100537080 | NULL | 0.19 | 0.03 | 3.71e-60 | |||
42 | 41 | Granule cell neurons3 | all | si:dkey-7j14.5 | 556563 | ZDB-GENE-030131-8110 | 0.47 | 0.2 | 1.83e-59 | |||
42 | 41 | Granule cell neurons3 | all | si:ch211-277g23.5 | 335995 | ZDB-LINCRNAG-030131-7938 | 0.24 | 0.04 | 4.67e-56 | |||
42 | 41 | Granule cell neurons3 | all | cdk15 | 791619 | ZDB-GENE-060421-7193 | 0.32 | 0.1 | 7.42e-55 | |||
42 | 41 | Granule cell neurons3 | all | gjd2b | 378444 | ZDB-GENE-030911-1 | 0.2 | 0.03 | 1.94e-53 | |||
42 | 41 | Granule cell neurons3 | all | anxa13l | 554118 | ZDB-GENE-050522-310 | 0.2 | 0.02 | 2.29e-52 | |||
42 | 41 | Granule cell neurons3 | all | gpm6ab | 407734 | ZDB-GENE-030710-8 | 0.59 | 0.81 | 4.95e-52 | |||
42 | 41 | Granule cell neurons3 | all | si:dkey-33c12.3 | 335380 | ZDB-GENE-030131-7320 | 0.49 | 0.28 | 9.92e-50 | |||
42 | 41 | Granule cell neurons3 | all | tmem178 | 767702 | ZDB-GENE-060929-756 | 0.39 | 0.12 | 8.56e-47 | |||
42 | 41 | Granule cell neurons3 | all | si:ch73-119p20.1 | 100334146 | ZDB-GENE-141216-395 | 0.53 | 0.28 | 2.13e-45 | |||
42 | 41 | Granule cell neurons3 | all | neurod1 | 30169 | ZDB-GENE-990415-172 | 0.61 | 0.29 | 2.5e-44 | |||
42 | 41 | Granule cell neurons3 | all | si:dkey-238f9.1 | 100333587 | ZDB-GENE-091204-297 | 0.26 | 0.06 | 5.89e-42 | |||
42 | 41 | Granule cell neurons3 | all | egr1 | 30498 | ZDB-GENE-980526-320 | 0.59 | 0.3 | 1.69e-41 | |||
42 | 41 | Granule cell neurons3 | all | si:ch73-305o9.3 | ZDB-GENE-141216-475 | 0.25 | 0.06 | 2.38e-41 | ||||
42 | 41 | Granule cell neurons3 | all | PRIMA1 | NULL | 0.2 | 0.04 | 2.41e-39 | ||||
42 | 41 | Granule cell neurons3 | all | mafba | 30210 | ZDB-GENE-980526-515 | 0.23 | 0.05 | 5.35e-39 | |||
42 | 41 | Granule cell neurons3 | all | vamp1 | 406707 | ZDB-GENE-040426-2725 | 0.35 | 0.17 | 4.74e-38 | |||
42 | 41 | Granule cell neurons3 | all | stmn4 | 406710 | ZDB-GENE-040426-2732 | 0.81 | 0.53 | 6.73e-38 | |||
42 | 41 | Granule cell neurons3 | all | marcksl1a | 406407 | ZDB-GENE-040426-2146 | 0.34 | 0.65 | 7.42e-38 | |||
42 | 41 | Granule cell neurons3 | all | tmem59l | 406646 | ZDB-GENE-040426-2651 | 0.68 | 0.46 | 1.06e-36 | |||
42 | 41 | Granule cell neurons3 | all | gdpd5b | 560645 | ZDB-GENE-030131-6028 | 0.31 | 0.1 | 8.8e-36 | |||
42 | 41 | Granule cell neurons3 | all | gria4a | 407735 | ZDB-GENE-020125-7 | 0.27 | 0.07 | 1.79e-35 | |||
42 | 41 | Granule cell neurons3 | all | auts2b | 100150849 | ZDB-GENE-131127-20 | 0.2 | 0.04 | 2.58e-35 | |||
42 | 41 | Granule cell neurons3 | all | grb2b | 406308 | ZDB-GENE-040426-1975 | 0.48 | 0.24 | 2.38e-33 | |||
42 | 41 | Granule cell neurons3 | all | foxo1a | 768121 | ZDB-GENE-061013-59 | 0.23 | 0.07 | 5.47e-33 | |||
42 | 41 | Granule cell neurons3 | all | tob1b | 406245 | ZDB-GENE-040426-2151 | 0.63 | 0.44 | 9.32e-32 | |||
42 | 41 | Granule cell neurons3 | all | dst | 100333215 | ZDB-GENE-030131-3399 | 0.3 | 0.11 | 9.79e-32 | |||
42 | 41 | Granule cell neurons3 | all | lhx1a | 30463 | ZDB-GENE-980526-347 | 0.26 | 0.07 | 1.8e-31 | |||
42 | 41 | Granule cell neurons3 | all | hsp70l | 560210 | ZDB-GENE-050321-1 | 0.61 | 0.82 | 2.11e-31 | |||
42 | 41 | Granule cell neurons3 | all | kcnma1a | 568554 | ZDB-GENE-070202-9 | 0.43 | 0.21 | 1.23e-30 | |||
42 | 41 | Granule cell neurons3 | all | sh3gl3a | 571626 | ZDB-GENE-070112-242 | 0.47 | 0.27 | 1.45e-30 | |||
42 | 41 | Granule cell neurons3 | all | iqsec2b | 797187 | ZDB-GENE-081105-73 | 0.35 | 0.14 | 2.32e-30 | |||
42 | 41 | Granule cell neurons3 | all | zbtb18 | 100003157 | ZDB-GENE-050419-73 | 0.57 | 0.31 | 6.17e-30 | |||
42 | 41 | Granule cell neurons3 | all | marcksl1b | 406504 | ZDB-GENE-040426-2315 | 0.69 | 0.87 | 1.29e-29 | |||
42 | 41 | Granule cell neurons3 | all | pcp4l1 | 100008021 | ZDB-GENE-040724-35 | 0.49 | 0.26 | 2.29e-29 | |||
42 | 41 | Granule cell neurons3 | all | mbnl3 | 567027 | ZDB-GENE-081002-3 | 0.36 | 0.17 | 2.58e-29 | |||
42 | 41 | Granule cell neurons3 | all | cntn1b | 541474 | ZDB-GENE-041210-236 | 0.22 | 0.07 | 8.59e-29 | |||
42 | 41 | Granule cell neurons3 | all | ntng1a | 569075 | ZDB-GENE-091118-13 | 0.22 | 0.06 | 1.1e-28 | |||
42 | 41 | Granule cell neurons3 | all | tmlhe | 555271 | ZDB-GENE-091204-144 | 0.07 | 0.29 | 3.19e-28 | |||
42 | 41 | Granule cell neurons3 | all | esrrga | 405890 | ZDB-GENE-030821-2 | 0.22 | 0.06 | 5.66e-28 | |||
42 | 41 | Granule cell neurons3 | all | prr18 | 101885898 | ZDB-GENE-081107-6 | 0.34 | 0.15 | 8.49e-28 | |||
42 | 41 | Granule cell neurons3 | all | grm2b | 564461 | ZDB-GENE-060201-5 | 0.28 | 0.1 | 3.23e-27 | |||
42 | 41 | Granule cell neurons3 | all | nebl | 541446 | ZDB-GENE-050320-151 | 0.27 | 0.08 | 3.71e-27 | |||
42 | 41 | Granule cell neurons3 | all | tshz1 | 369196 | ZDB-GENE-030820-3 | 0.35 | 0.14 | 8.28e-27 | |||
42 | 41 | Granule cell neurons3 | all | elmo1 | 406364 | ZDB-GENE-040426-2069 | 0.59 | 0.37 | 1.17e-26 | |||
42 | 41 | Granule cell neurons3 | all | glula | 100000775 | ZDB-GENE-030131-688 | 0.12 | 0.3 | 1.7e-26 | |||
42 | 41 | Granule cell neurons3 | all | hmgn2 | 569904 | ZDB-GENE-051030-81 | 0.41 | 0.6 | 2.74e-26 | |||
42 | 41 | Granule cell neurons3 | all | mdkb | 65231 | ZDB-GENE-010131-6 | 0.43 | 0.61 | 5.03e-26 | |||
42 | 41 | Granule cell neurons3 | all | srrm4 | 796574 | ZDB-GENE-050208-34 | 0.41 | 0.23 | 5.05e-26 | |||
42 | 41 | Granule cell neurons3 | all | ppp1cb | 100003223 | ZDB-GENE-030616-609 | 0.56 | 0.38 | 8.12e-26 | |||
42 | 41 | Granule cell neurons3 | all | klc2 | 562365 | ZDB-GENE-030131-2670 | 0.5 | 0.32 | 3.26e-25 | |||
42 | 41 | Granule cell neurons3 | all | zfhx4 | 556453 | ZDB-GENE-070530-3 | 0.07 | 0.23 | 3.74e-25 | |||
42 | 41 | Granule cell neurons3 | all | slc6a1a | 692318 | ZDB-GENE-060519-23 | 0.04 | 0.21 | 1.12e-24 | |||
42 | 41 | Granule cell neurons3 | all | btg1 | 114432 | ZDB-GENE-010726-1 | 0.67 | 0.52 | 6.43e-24 | |||
42 | 41 | Granule cell neurons3 | all | si:dkeyp-75h12.5 | 566718 | ZDB-GENE-030131-7914 | 0.59 | 0.39 | 6.93e-24 | |||
42 | 41 | Granule cell neurons3 | all | slc6a1b | 492490 | ZDB-GENE-041114-57 | 0.14 | 0.31 | 7.83e-24 | |||
42 | 41 | Granule cell neurons3 | all | camk2d2 | 436815 | ZDB-GENE-040718-277 | 0.73 | 0.51 | 8.62e-24 | |||
42 | 41 | Granule cell neurons3 | all | stmn2a | 449651 | ZDB-GENE-041010-85 | 0.81 | 0.61 | 1.08e-23 | |||
42 | 41 | Granule cell neurons3 | all | mbnl2 | 560384 | ZDB-GENE-030131-9582 | 0.38 | 0.2 | 1.65e-23 | |||
42 | 41 | Granule cell neurons3 | all | maptb | 567833 | ZDB-GENE-081027-2 | 0.87 | 0.68 | 2.24e-23 | |||
42 | 41 | Granule cell neurons3 | all | olfm1b | 445092 | ZDB-GENE-040801-228 | 0.25 | 0.4 | 3.81e-23 | |||
42 | 41 | Granule cell neurons3 | all | tjp1b | 565459 | ZDB-GENE-070925-1 | 0.3 | 0.13 | 4.1e-23 | |||
42 | 41 | Granule cell neurons3 | all | tuba2 | 406303 | ZDB-GENE-040426-1970 | 0.8 | 0.61 | 8.9e-22 | |||
42 | 41 | Granule cell neurons3 | all | tshz3b | 565811 | ZDB-GENE-100319-2 | 0.25 | 0.09 | 1.78e-21 | |||
42 | 41 | Granule cell neurons3 | all | cdkn1ba | 402862 | ZDB-GENE-040812-3 | 0.28 | 0.11 | 1.97e-21 | |||
42 | 41 | Granule cell neurons3 | all | rasgef1ba | 327572 | ZDB-GENE-030131-5783 | 0.3 | 0.13 | 2.01e-21 | |||
42 | 41 | Granule cell neurons3 | all | clu | 393775 | ZDB-GENE-040426-1774 | 0.31 | 0.14 | 2.74e-21 | |||
42 | 41 | Granule cell neurons3 | all | junba | 407086 | ZDB-GENE-040426-2172 | 0.47 | 0.27 | 3.62e-21 | |||
42 | 41 | Granule cell neurons3 | all | dlg1 | 114446 | ZDB-GENE-010724-8 | 0.31 | 0.14 | 4.07e-21 | |||
42 | 41 | Granule cell neurons3 | all | slc32a1 | 798575 | ZDB-GENE-061201-1 | 0.04 | 0.19 | 7.51e-21 | |||
42 | 41 | Granule cell neurons3 | all | ctnnb1 | 30265 | ZDB-GENE-980526-362 | 0.37 | 0.55 | 1.22e-20 | |||
42 | 41 | Granule cell neurons3 | all | ldb2b | 30578 | ZDB-GENE-990415-137 | 0.07 | 0.23 | 1.7e-19 | |||
42 | 41 | Granule cell neurons3 | all | si:ch211-222l21.1 | 795027 | ZDB-GENE-030131-247 | 0.61 | 0.77 | 3.09e-19 | |||
42 | 41 | Granule cell neurons3 | all | clstn2 | 100125749 | ZDB-GENE-070911-2 | 0.36 | 0.18 | 4.07e-19 | |||
42 | 41 | Granule cell neurons3 | all | cplx2l | 436732 | ZDB-GENE-040718-160 | 0.45 | 0.29 | 4.46e-19 | |||
42 | 41 | Granule cell neurons3 | all | egr4 | 795099 | ZDB-GENE-080204-90 | 0.59 | 0.37 | 5.82e-19 | |||
42 | 41 | Granule cell neurons3 | all | nfia | 556665 | ZDB-GENE-050208-501 | 0.37 | 0.19 | 1.58e-18 | |||
42 | 41 | Granule cell neurons3 | all | kcnc1a | 565419 | ZDB-GENE-061220-10 | 0.11 | 0.28 | 3.23e-18 | |||
42 | 41 | Granule cell neurons3 | all | rgma | 414272 | ZDB-GENE-040527-1 | 0.29 | 0.13 | 4.08e-18 | |||
42 | 41 | Granule cell neurons3 | all | hsp70.2 | 100535101 | ZDB-GENE-110405-1 | 0.71 | 0.87 | 7.6e-18 | |||
42 | 41 | Granule cell neurons3 | all | sesn1 | 436933 | ZDB-GENE-040718-408 | 0.58 | 0.42 | 8.54e-18 | |||
42 | 41 | Granule cell neurons3 | all | zic3 | 368263 | ZDB-GENE-030708-2 | 0.09 | 0.26 | 2.85e-17 | |||
42 | 41 | Granule cell neurons3 | all | si:dkey-85p17.3 | 100150414 | ZDB-GENE-141219-8 | 0.34 | 0.19 | 4.83e-17 | |||
42 | 41 | Granule cell neurons3 | all | sgk1 | 324140 | ZDB-GENE-030131-2860 | 0.33 | 0.16 | 4.99e-17 | |||
42 | 41 | Granule cell neurons3 | all | hsp70.1 | 100126123 | ZDB-GENE-990415-91 | 0.63 | 0.8 | 7.25e-17 | |||
42 | 41 | Granule cell neurons3 | all | adcyap1r1a | 541315 | ZDB-GENE-050315-1 | 0.19 | 0.35 | 1.68e-16 | |||
42 | 41 | Granule cell neurons3 | all | jun | 335916 | ZDB-GENE-030131-7859 | 0.64 | 0.45 | 2.78e-16 | |||
42 | 41 | Granule cell neurons3 | all | fosb | 492346 | ZDB-GENE-041114-181 | 0.43 | 0.25 | 4.04e-16 | |||
42 | 41 | Granule cell neurons3 | all | hmgb1a | 321622 | ZDB-GENE-030131-341 | 0.51 | 0.68 | 9.85e-16 | |||
42 | 41 | Granule cell neurons3 | all | klf6a | 280650 | ZDB-GENE-021115-9 | 0.07 | 0.23 | 2.01e-15 | |||
42 | 41 | Granule cell neurons3 | all | sept3 | 554123 | ZDB-GENE-050522-375 | 0.19 | 0.38 | 2.58e-15 | |||
42 | 41 | Granule cell neurons3 | all | dnajb5 | 569466 | ZDB-GENE-070705-308 | 0.48 | 0.3 | 5.31e-15 | |||
42 | 41 | Granule cell neurons3 | all | cxxc5a | 557911 | ZDB-GENE-030131-3178 | 0.38 | 0.22 | 5.39e-15 | |||
42 | 41 | Granule cell neurons3 | all | ndrg4 | 692305 | ZDB-GENE-060512-226 | 0.76 | 0.6 | 1.09e-14 | |||
42 | 41 | Granule cell neurons3 | all | map1ab | 797545 | ZDB-GENE-100426-3 | 0.6 | 0.43 | 1.08e-13 | |||
42 | 41 | Granule cell neurons3 | all | ywhag2 | 560560 | ZDB-GENE-061023-2 | 0.77 | 0.61 | 1.24e-12 | |||
42 | 41 | Granule cell neurons3 | all | islr2 | 541396 | ZDB-GENE-050320-95 | 0.48 | 0.31 | 3.66e-12 | |||
42 | 41 | Granule cell neurons3 | all | gnao1a | 393760 | ZDB-GENE-040426-1757 | 0.44 | 0.6 | 8.65e-12 | |||
42 | 41 | Granule cell neurons3 | all | pcsk1nl | 570305 | ZDB-GENE-090427-2 | 0.57 | 0.41 | 1.72e-11 | |||
42 | 41 | Granule cell neurons3 | all | si:ch73-281n10.2 | 561719 | ZDB-GENE-131120-172 | 0.29 | 0.45 | 2.15e-11 | |||
42 | 41 | Granule cell neurons3 | all | ndufa4l | 406726 | ZDB-GENE-040426-2756 | 0.34 | 0.5 | 2.98e-10 |