Marker Genes

Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

  • tissue: Brain
  • ontology: Brain
  • genotype: Danio rerio TL/AB strain
  • stage: 23-25 days post-fertlization (juvenile)
  • treatment condition: WT

Rows:133
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
42 55 Optic tectum neurons all six3a 30635 ZDB-GENE-990415-127 0.68 0.03 1.65E-153
42 55 Optic tectum neurons all six3b 30636 ZDB-GENE-990415-128 0.51 0.01 8.52E-130
42 55 Optic tectum neurons all gata3 30458 ZDB-GENE-990415-82 0.69 0.11 2.26E-82
42 55 Optic tectum neurons all cd99l2 323266 ZDB-GENE-030131-1986 0.97 0.63 2.75E-77
42 55 Optic tectum neurons all tal1 30766 ZDB-GENE-980526-501 0.59 0.08 4.22E-70
42 55 Optic tectum neurons all pax2a 30425 ZDB-GENE-990415-8 0.41 0.05 2.31E-69
42 55 Optic tectum neurons all lhx5 30465 ZDB-GENE-980526-484 0.47 0.05 8.81E-59
42 55 Optic tectum neurons all tmsb 402820 ZDB-GENE-050307-5 0.84 0.38 6.09E-54
42 55 Optic tectum neurons all lhx1a 30463 ZDB-GENE-980526-347 0.47 0.07 1.36E-48
42 55 Optic tectum neurons all otx1 30500 ZDB-GENE-980526-400 0.49 0.09 4.95E-48
42 55 Optic tectum neurons all nxph1 437006 ZDB-GENE-040718-231 0.44 0.06 1.3E-46
42 55 Optic tectum neurons all calb2b 393684 ZDB-GENE-040426-1668 0.25 0.02 6.5E-45
42 55 Optic tectum neurons all emx2 30537 ZDB-GENE-990415-54 0.35 0.04 1.78E-41
42 55 Optic tectum neurons all tubb5 386701 ZDB-GENE-031110-4 0.94 0.61 7.43E-41
42 55 Optic tectum neurons all gad2 550403 ZDB-GENE-030909-9 0.73 0.32 1.57E-32
42 55 Optic tectum neurons all zfhx3 100333211 ZDB-GENE-030131-7577 0.64 0.25 1.6E-32
42 55 Optic tectum neurons all foxp4 557245 ZDB-GENE-101207-1 0.41 0.15 4.48E-32
42 55 Optic tectum neurons all sox4a 336346 ZDB-GENE-030131-8290 0.83 0.43 1.33E-30
42 55 Optic tectum neurons all cbfa2t3 563252 ZDB-GENE-070209-2 0.68 0.3 1.43E-28
42 55 Optic tectum neurons all slc32a1 798575 ZDB-GENE-061201-1 0.54 0.18 1.77E-28
42 55 Optic tectum neurons all inaa 555251 ZDB-GENE-060531-65 0.24 0.03 1.2E-27
42 55 Optic tectum neurons all maptb 567833 ZDB-GENE-081027-2 0.93 0.68 1.37E-25
42 55 Optic tectum neurons all cnp 325896 ZDB-GENE-030521-29 0.64 0.29 4.73E-25
42 55 Optic tectum neurons all elavl4 30737 ZDB-GENE-990415-246 0.88 0.58 5.04E-23
42 55 Optic tectum neurons all zfpm2b 568464 ZDB-GENE-060130-5 0.27 0.05 5.88E-22
42 55 Optic tectum neurons all stmn2b 100003563 ZDB-GENE-050522-207 0.82 0.49 1.15E-21
42 55 Optic tectum neurons all zfpm2a 568996 ZDB-GENE-060130-4 0.46 0.18 1.16E-21
42 55 Optic tectum neurons all sox14 557661 ZDB-GENE-051113-268 0.27 0.05 1.93E-21
42 55 Optic tectum neurons all en2a 30243 ZDB-GENE-980526-167 0.36 0.09 2.47E-21
42 55 Optic tectum neurons all uncx 798510 ZDB-GENE-080509-1 0.26 0.04 4.36E-21
42 55 Optic tectum neurons all zc4h2 323487 ZDB-GENE-030131-2207 0.75 0.41 6.4E-21
42 55 Optic tectum neurons all neurod1 30169 ZDB-GENE-990415-172 0.08 0.3 7.47E-20
42 55 Optic tectum neurons all podxl2 563754 ZDB-GENE-030131-6241 0.61 0.31 2.51E-19
42 55 Optic tectum neurons all dpysl3 553166 ZDB-GENE-050720-2 0.83 0.61 1.53E-18
42 55 Optic tectum neurons all aldocb 369193 ZDB-GENE-030821-1 0.38 0.57 2.85E-18
42 55 Optic tectum neurons all si:dkey-12h9.6 569780 ZDB-GENE-041001-145 0.36 0.13 4.22E-18
42 55 Optic tectum neurons all pbx1a 58138 ZDB-GENE-000405-1 0.51 0.26 5.65E-18
42 55 Optic tectum neurons all eno1a 334116 ZDB-GENE-030131-6048 0.34 0.5 1.38E-17
42 55 Optic tectum neurons all zbtb18 100003157 ZDB-GENE-050419-73 0.08 0.31 2.0E-17
42 55 Optic tectum neurons all scrt1a 564658 ZDB-GENE-080219-30 0.35 0.11 2.8E-17
42 55 Optic tectum neurons all en2b 30238 ZDB-GENE-980526-40 0.34 0.1 1.91E-16
42 55 Optic tectum neurons all fscn1a 558271 ZDB-GENE-031009-1 0.58 0.28 3.03E-16
42 55 Optic tectum neurons all cplx2 556701 ZDB-GENE-081113-1 0.47 0.2 5.89E-16
42 55 Optic tectum neurons all egr1 30498 ZDB-GENE-980526-320 0.09 0.3 6.23E-16
42 55 Optic tectum neurons all tmsb2 566329 ZDB-GENE-070126-5 0.8 0.51 5.17E-15
42 55 Optic tectum neurons all zfhx4 556453 ZDB-GENE-070530-3 0.49 0.22 6.21E-15
42 55 Optic tectum neurons all ppp1r14ba 564838 ZDB-GENE-060825-331 0.46 0.2 1.66E-14
42 55 Optic tectum neurons all lmo1 280646 ZDB-GENE-021115-6 0.38 0.14 2.57E-14
42 55 Optic tectum neurons all elavl3 30732 ZDB-GENE-980526-76 0.92 0.73 3.27E-14
42 55 Optic tectum neurons all zic2a 58077 ZDB-GENE-000710-4 0.08 0.3 4.38E-14
42 55 Optic tectum neurons all ywhah 406443 ZDB-GENE-040426-2191 0.75 0.48 6.45E-14
42 55 Optic tectum neurons all tmeff1b 553511 ZDB-GENE-050706-143 0.65 0.37 9.69E-14
42 55 Optic tectum neurons all dynll2a 373083 ZDB-GENE-030828-11 0.44 0.19 1.8E-13
42 55 Optic tectum neurons all tuba2 406303 ZDB-GENE-040426-1970 0.86 0.61 2.91E-13
42 55 Optic tectum neurons all si:ch73-386h18.1 563768 ZDB-GENE-050309-237 0.33 0.12 8.18E-13
42 55 Optic tectum neurons all r3hdm1 110437712 NULL 0.27 0.49 1.17E-12
42 55 Optic tectum neurons all marcksl1a 406407 ZDB-GENE-040426-2146 0.86 0.64 3.37E-12
42 55 Optic tectum neurons all zbtb20 568779 ZDB-GENE-070112-1992 0.46 0.22 3.5E-12
42 55 Optic tectum neurons all gap43 30608 ZDB-GENE-990415-87 0.69 0.43 6.95E-12
42 55 Optic tectum neurons all dclk1b 100151759 ZDB-GENE-080516-7 0.66 0.42 7.31E-12
42 55 Optic tectum neurons all si:ch73-1a9.3 556254 ZDB-GENE-141216-84 0.91 0.74 8.59E-12
42 55 Optic tectum neurons all marcksb 323201 ZDB-GENE-030131-1921 0.89 0.71 9.02E-12
42 55 Optic tectum neurons all cux1a 797445 ZDB-GENE-030131-5868 0.43 0.2 1.02E-11
42 55 Optic tectum neurons all cbx6a 799294 ZDB-GENE-040808-26 0.4 0.17 1.56E-11
42 55 Optic tectum neurons all fmnl2b 492608 ZDB-GENE-041111-182 0.4 0.18 2.03E-11
42 55 Optic tectum neurons all igdcc3 555947 ZDB-GENE-080303-24 0.35 0.14 2.13E-11
42 55 Optic tectum neurons all zic1 30096 ZDB-GENE-000208-4 0.02 0.18 2.94E-11
42 55 Optic tectum neurons all mab21l1 246091 ZDB-GENE-020516-1 0.04 0.21 2.97E-11
42 55 Optic tectum neurons all celf3a 57922 ZDB-GENE-000501-2 0.56 0.31 3.56E-11
42 55 Optic tectum neurons all junba 407086 ZDB-GENE-040426-2172 0.08 0.27 5.37E-11
42 55 Optic tectum neurons all rpl31 677758 ZDB-GENE-060331-121 0.96 0.81 6.34E-11
42 55 Optic tectum neurons all tuba1a 573216 ZDB-GENE-090507-4 0.9 0.75 7.39E-11
42 55 Optic tectum neurons all add2 570147 ZDB-GENE-080718-4 0.62 0.41 9.08E-11
42 55 Optic tectum neurons all gria1a 798689 ZDB-GENE-020125-1 0.35 0.19 1.13E-10
42 55 Optic tectum neurons all cotl1 336381 ZDB-GENE-030131-8325 0.42 0.21 1.61E-10
42 55 Optic tectum neurons all grm2b 564461 ZDB-GENE-060201-5 0.27 0.1 2.69E-10
42 55 Optic tectum neurons all sox11a 30602 ZDB-GENE-980526-395 0.47 0.24 2.77E-10
42 55 Optic tectum neurons all hnrnpr 406735 ZDB-GENE-040426-2766 0.5 0.27 2.95E-10
42 55 Optic tectum neurons all si:ch211-10a23.2 567812 ZDB-GENE-090313-9 0.33 0.13 2.98E-10
42 55 Optic tectum neurons all ybx1 795398 ZDB-GENE-000629-3 0.94 0.77 4.17E-10
42 55 Optic tectum neurons all adgrb1a 563527 ZDB-GENE-060607-12 0.39 0.21 4.29E-10
42 55 Optic tectum neurons all auts2a 368890 ZDB-GENE-030616-571 0.34 0.14 4.83E-10
42 55 Optic tectum neurons all bhlhe40 324413 ZDB-GENE-030131-3133 0.07 0.24 4.87E-10
42 55 Optic tectum neurons all si:dkey-56m19.5 797705 ZDB-GENE-030131-226 0.55 0.31 5.09E-10
42 55 Optic tectum neurons all dscamb 386937 ZDB-GENE-031118-67 0.26 0.1 8.12E-10
42 55 Optic tectum neurons all id4 664761 ZDB-GENE-051113-208 0.31 0.13 8.2E-10
42 55 Optic tectum neurons all robo1 30769 ZDB-GENE-000209-3 0.36 0.16 1.0E-9
42 55 Optic tectum neurons all si:dkey-276j7.1 561769 ZDB-GENE-060720-44 0.84 0.62 1.19E-9
42 55 Optic tectum neurons all zic3 368263 ZDB-GENE-030708-2 0.07 0.26 1.89E-9
42 55 Optic tectum neurons all jpt1b 402906 ZDB-GENE-030131-2784 0.68 0.47 2.1E-9
42 55 Optic tectum neurons all hmgn7 567263 ZDB-GENE-061215-23 0.77 0.57 4.53E-9
42 55 Optic tectum neurons all si:ch211-288g17.3 567638 ZDB-GENE-030131-461 0.78 0.57 4.84E-9
42 55 Optic tectum neurons all map2 450004 ZDB-GENE-041010-118 0.52 0.31 6.76E-9
42 55 Optic tectum neurons all pcp4a 386848 ZDB-GENE-031118-105 0.09 0.25 9.72E-9
42 55 Optic tectum neurons all vim 140599 ZDB-GENE-011212-3 0.29 0.12 1.06E-8
42 55 Optic tectum neurons all nat8l 564754 ZDB-GENE-030729-4 0.64 0.43 1.06E-8
42 55 Optic tectum neurons all irf2bpl 324723 ZDB-GENE-040426-1968 0.57 0.36 1.31E-8
42 55 Optic tectum neurons all zgc:153426 767746 ZDB-GENE-060929-220 0.83 0.66 1.36E-8
42 55 Optic tectum neurons all selenow1 352915 ZDB-GENE-030410-5 0.49 0.31 1.7E-8
42 55 Optic tectum neurons all ctnnb1 30265 ZDB-GENE-980526-362 0.36 0.55 2.23E-8
42 55 Optic tectum neurons all hdac1 192302 ZDB-GENE-020419-32 0.55 0.34 2.24E-8
42 55 Optic tectum neurons all ldb2a 30577 ZDB-GENE-990415-136 0.3 0.13 2.47E-8
42 55 Optic tectum neurons all casp3a 140621 ZDB-GENE-011210-1 0.35 0.16 3.1E-8
42 55 Optic tectum neurons all im:7147486 100537446 ZDB-GENE-050208-286 0.3 0.13 3.65E-8
42 55 Optic tectum neurons all ywhag1 117604 ZDB-GENE-011115-1 0.5 0.29 3.98E-8
42 55 Optic tectum neurons all ldb1a 30579 ZDB-GENE-990415-138 0.42 0.23 4.12E-8
42 55 Optic tectum neurons all sumo2b 445027 ZDB-GENE-040801-7 0.64 0.44 4.29E-8
42 55 Optic tectum neurons all tmem178b 436669 ZDB-GENE-040718-92 0.49 0.29 5.72E-8
42 55 Optic tectum neurons all cep170aa 557463 ZDB-GENE-090312-109 0.34 0.16 6.51E-8
42 55 Optic tectum neurons all hmgb1b 795095 ZDB-GENE-030131-8480 0.83 0.64 7.1E-8
42 55 Optic tectum neurons all clic4 368255 ZDB-GENE-030326-3 0.28 0.12 1.09E-7
42 55 Optic tectum neurons all plppr3a 553336 ZDB-GENE-070912-555 0.3 0.13 1.15E-7
42 55 Optic tectum neurons all kdm6bb 563644 ZDB-GENE-040724-166 0.42 0.24 1.39E-7
42 55 Optic tectum neurons all dpysl4 553411 ZDB-GENE-050720-3 0.37 0.2 1.47E-7
42 55 Optic tectum neurons all mllt11 563531 ZDB-GENE-030131-3007 0.74 0.55 1.64E-7
42 55 Optic tectum neurons all cbx1b 415180 ZDB-GENE-040625-68 0.57 0.37 3.39E-7
42 55 Optic tectum neurons all fabp3 171478 ZDB-GENE-020318-2 0.82 0.66 4.96E-7
42 55 Optic tectum neurons all islr2 541396 ZDB-GENE-050320-95 0.15 0.31 5.63E-7
42 55 Optic tectum neurons all ptpro 407676 ZDB-GENE-070424-54 0.34 0.17 1.11E-6
42 55 Optic tectum neurons all cacna2d2a 541376 ZDB-GENE-050320-71 0.52 0.33 1.22E-6
42 55 Optic tectum neurons all cct3 192327 ZDB-GENE-020419-5 0.61 0.42 1.72E-6
42 55 Optic tectum neurons all camta1b 497465 ZDB-GENE-080229-1 0.51 0.33 1.89E-6
42 55 Optic tectum neurons all atrx 323299 ZDB-GENE-030912-11 0.64 0.45 2.03E-6
42 55 Optic tectum neurons all rab11a 492487 ZDB-GENE-041114-53 0.53 0.35 2.88E-6
42 55 Optic tectum neurons all pfn2 394235 ZDB-GENE-040115-4 0.77 0.62 3.53E-6
42 55 Optic tectum neurons all robo2 60309 ZDB-GENE-001019-1 0.39 0.22 3.7E-6
42 55 Optic tectum neurons all si:ch211-137a8.4 560240 ZDB-GENE-030131-3742 0.59 0.4 6.24E-6
42 55 Optic tectum neurons all pfn2l 321383 ZDB-GENE-030131-34 0.71 0.55 9.77E-6
42 55 Optic tectum neurons all foxk2 324141 ZDB-GENE-030131-2861 0.41 0.26 1.05E-5
42 55 Optic tectum neurons all ppp1r14c 568055 ZDB-GENE-050706-92 0.36 0.21 2.07E-5
42 55 Optic tectum neurons all b4galt6 393912 ZDB-GENE-040426-789 0.48 0.32 3.06E-5
42 55 Optic tectum neurons all stox2a 571741 ZDB-GENE-090313-101 0.52 0.36 5.51E-5
42 55 Optic tectum neurons all tnrc6c1 560874 ZDB-GENE-030131-7440 0.59 0.44 0.000106924992719