Marker Genes

Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

  • tissue: Brain
  • ontology: Brain
  • genotype: Danio rerio TL/AB strain
  • stage: 23-25 days post-fertlization (juvenile)
  • treatment condition: WT

Rows:76
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
42 28 hmx3a+_hmx2+ neurons all hmx3a 60310 ZDB-GENE-001020-1 0.67 0.02 0
42 28 hmx3a+_hmx2+ neurons all hmx2 555632 ZDB-GENE-080506-2 0.54 0.01 0
42 28 hmx3a+_hmx2+ neurons all PSMC1P1 NULL 0.5 0.02 0
42 28 hmx3a+_hmx2+ neurons all gsx1 449875 ZDB-GENE-041008-135 0.34 0.02 7.24E-252
42 28 hmx3a+_hmx2+ neurons all nkx2.4a 562300 ZDB-GENE-030131-6336 0.26 0.01 5.97E-180
42 28 hmx3a+_hmx2+ neurons all ZNF519 NULL 0.35 0.04 1.28E-158
42 28 hmx3a+_hmx2+ neurons all tmsb 402820 ZDB-GENE-050307-5 0.78 0.38 1.15E-122
42 28 hmx3a+_hmx2+ neurons all TCEA1P3 NULL 0.33 0.05 1.75E-108
42 28 hmx3a+_hmx2+ neurons all UPF3AP1 NULL 0.21 0.02 1.33E-90
42 28 hmx3a+_hmx2+ neurons all cd99l2 323266 ZDB-GENE-030131-1986 0.9 0.63 6.59E-86
42 28 hmx3a+_hmx2+ neurons all prox3 564431 ZDB-GENE-050107-3 0.23 0.04 8.82E-86
42 28 hmx3a+_hmx2+ neurons all tubb5 386701 ZDB-GENE-031110-4 0.88 0.61 5.55E-82
42 28 hmx3a+_hmx2+ neurons all SMAD5-AS1 NULL 0.2 0.02 3.95E-80
42 28 hmx3a+_hmx2+ neurons all nrp2b 405902 ZDB-GENE-040611-3 0.25 0.05 1.06E-74
42 28 hmx3a+_hmx2+ neurons all si:ch211-222l21.1 795027 ZDB-GENE-030131-247 0.96 0.77 1.27E-73
42 28 hmx3a+_hmx2+ neurons all prox1a 30679 ZDB-GENE-980526-397 0.19 0.03 2.0E-65
42 28 hmx3a+_hmx2+ neurons all neurod1 30169 ZDB-GENE-990415-172 0.06 0.3 1.42E-60
42 28 hmx3a+_hmx2+ neurons all zic3 368263 ZDB-GENE-030708-2 0.03 0.26 3.58E-60
42 28 hmx3a+_hmx2+ neurons all zic2a 58077 ZDB-GENE-000710-4 0.08 0.31 9.4E-59
42 28 hmx3a+_hmx2+ neurons all gad2 550403 ZDB-GENE-030909-9 0.61 0.32 1.67E-58
42 28 hmx3a+_hmx2+ neurons all SONP1 NULL 0.74 0.43 4.55E-58
42 28 hmx3a+_hmx2+ neurons all maptb 567833 ZDB-GENE-081027-2 0.91 0.68 8.57E-56
42 28 hmx3a+_hmx2+ neurons all zfhx3 100333211 ZDB-GENE-030131-7577 0.53 0.25 3.25E-55
42 28 hmx3a+_hmx2+ neurons all slc32a1 798575 ZDB-GENE-061201-1 0.43 0.18 3.9E-53
42 28 hmx3a+_hmx2+ neurons all zbtb18 100003157 ZDB-GENE-050419-73 0.1 0.32 9.02E-51
42 28 hmx3a+_hmx2+ neurons all zfhx4 556453 ZDB-GENE-070530-3 0.48 0.22 3.1E-50
42 28 hmx3a+_hmx2+ neurons all dpysl3 553166 ZDB-GENE-050720-2 0.85 0.6 3.37E-50
42 28 hmx3a+_hmx2+ neurons all marcksl1a 406407 ZDB-GENE-040426-2146 0.87 0.64 2.73E-49
42 28 hmx3a+_hmx2+ neurons all mab21l1 246091 ZDB-GENE-020516-1 0.03 0.21 2.74E-45
42 28 hmx3a+_hmx2+ neurons all celf3a 57922 ZDB-GENE-000501-2 0.57 0.31 3.07E-44
42 28 hmx3a+_hmx2+ neurons all rrad 327396 ZDB-GENE-030131-5607 0.25 0.08 6.86E-44
42 28 hmx3a+_hmx2+ neurons all scn3b 563935 ZDB-GENE-070920-2 0.36 0.15 1.31E-42
42 28 hmx3a+_hmx2+ neurons all nrn1a 436780 ZDB-GENE-040718-212 0.02 0.18 3.41E-42
42 28 hmx3a+_hmx2+ neurons all marcksb 323201 ZDB-GENE-030131-1921 0.9 0.71 6.58E-42
42 28 hmx3a+_hmx2+ neurons all sox4a 336346 ZDB-GENE-030131-8290 0.67 0.43 3.04E-40
42 28 hmx3a+_hmx2+ neurons all tmsb2 566329 ZDB-GENE-070126-5 0.75 0.51 4.38E-40
42 28 hmx3a+_hmx2+ neurons all tuba1a 573216 ZDB-GENE-090507-4 0.91 0.75 2.59E-39
42 28 hmx3a+_hmx2+ neurons all pou2f2a 557055 ZDB-GENE-060310-2 0.24 0.09 3.09E-39
42 28 hmx3a+_hmx2+ neurons all pcdh10b 360138 ZDB-GENE-030721-4 0.34 0.15 4.2E-37
42 28 hmx3a+_hmx2+ neurons all ccng1 171473 ZDB-GENE-020322-1 0.13 0.32 1.3E-36
42 28 hmx3a+_hmx2+ neurons all atp2b4 768304 ZDB-GENE-061027-60 0.25 0.41 2.7E-36
42 28 hmx3a+_hmx2+ neurons all sppl3 548609 ZDB-GENE-050913-71 0.33 0.15 4.18E-34
42 28 hmx3a+_hmx2+ neurons all actb1 57934 ZDB-GENE-000329-1 0.88 0.72 5.76E-34
42 28 hmx3a+_hmx2+ neurons all adcyap1r1a 541315 ZDB-GENE-050315-1 0.56 0.35 2.01E-33
42 28 hmx3a+_hmx2+ neurons all mllt11 563531 ZDB-GENE-030131-3007 0.77 0.55 2.22E-33
42 28 hmx3a+_hmx2+ neurons all adcyap1b 335625 ZDB-GENE-041010-89 0.06 0.22 2.79E-32
42 28 hmx3a+_hmx2+ neurons all adgrb1b 100302472 ZDB-GENE-081031-45 0.32 0.14 1.3E-31
42 28 hmx3a+_hmx2+ neurons all gnai1 393946 ZDB-GENE-040426-1310 0.45 0.25 2.96E-30
42 28 hmx3a+_hmx2+ neurons all sh3d19 553811 ZDB-GENE-050522-481 0.31 0.14 6.18E-30
42 28 hmx3a+_hmx2+ neurons all laptm4b 368911 ZDB-GENE-030616-616 0.22 0.39 9.45E-30
42 28 hmx3a+_hmx2+ neurons all kidins220b 335881 ZDB-GENE-030131-7824 0.63 0.43 1.55E-29
42 28 hmx3a+_hmx2+ neurons all h2afy2 558711 ZDB-GENE-050913-114 0.67 0.47 1.95E-29
42 28 hmx3a+_hmx2+ neurons all irf2bpl 324723 ZDB-GENE-040426-1968 0.57 0.36 3.35E-29
42 28 hmx3a+_hmx2+ neurons all si:ch211-10a23.2 567812 ZDB-GENE-090313-9 0.3 0.13 8.45E-29
42 28 hmx3a+_hmx2+ neurons all cnp 325896 ZDB-GENE-030521-29 0.49 0.29 1.24E-27
42 28 hmx3a+_hmx2+ neurons all foxp4 557245 ZDB-GENE-101207-1 0.3 0.15 2.48E-27
42 28 hmx3a+_hmx2+ neurons all vat1 368752 ZDB-GENE-030616-178 0.5 0.31 2.92E-27
42 28 hmx3a+_hmx2+ neurons all tuba2 406303 ZDB-GENE-040426-1970 0.8 0.61 2.94E-27
42 28 hmx3a+_hmx2+ neurons all NA NULL 0.36 0.52 1.64E-26
42 28 hmx3a+_hmx2+ neurons all fscn1a 558271 ZDB-GENE-031009-1 0.47 0.28 1.02E-25
42 28 hmx3a+_hmx2+ neurons all cnih2 541397 ZDB-GENE-050320-96 0.29 0.13 6.13E-25
42 28 hmx3a+_hmx2+ neurons all tox 569666 ZDB-GENE-070912-181 0.35 0.19 7.46E-25
42 28 hmx3a+_hmx2+ neurons all zbtb20 568779 ZDB-GENE-070112-1992 0.4 0.22 3.82E-24
42 28 hmx3a+_hmx2+ neurons all nsg2 324971 ZDB-GENE-030131-3694 0.67 0.48 7.34E-24
42 28 hmx3a+_hmx2+ neurons all dynll2b 572690 ZDB-GENE-050320-132 0.46 0.28 1.18E-23
42 28 hmx3a+_hmx2+ neurons all cspg5a 558206 ZDB-GENE-080425-4 0.75 0.57 7.35E-23
42 28 hmx3a+_hmx2+ neurons all crip2 554826 ZDB-GENE-040426-2889 0.4 0.23 1.5E-22
42 28 hmx3a+_hmx2+ neurons all map2 450004 ZDB-GENE-041010-118 0.48 0.31 3.05E-22
42 28 hmx3a+_hmx2+ neurons all dclk1b 100151759 ZDB-GENE-080516-7 0.6 0.42 6.13E-22
42 28 hmx3a+_hmx2+ neurons all slc1a4 368885 ZDB-GENE-030616-566 0.43 0.27 5.53E-20
42 28 hmx3a+_hmx2+ neurons all zc4h2 323487 ZDB-GENE-030131-2207 0.58 0.4 6.07E-20
42 28 hmx3a+_hmx2+ neurons all cacna2d2a 541376 ZDB-GENE-050320-71 0.49 0.33 6.67E-20
42 28 hmx3a+_hmx2+ neurons all syt4 335357 ZDB-GENE-030131-7297 0.6 0.43 3.64E-18
42 28 hmx3a+_hmx2+ neurons all si:ch211-113g11.6 559008 ZDB-GENE-060503-473 0.4 0.24 3.79E-18
42 28 hmx3a+_hmx2+ neurons all rps27.2 393738 ZDB-GENE-040426-1735 0.64 0.48 3.87E-18
42 28 hmx3a+_hmx2+ neurons all ptpn5 559524 ZDB-GENE-101028-3 0.54 0.38 6.05E-18