Marker Genes

Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

  • tissue: Brain
  • ontology: Brain
  • genotype: Danio rerio TL/AB strain
  • stage: 23-25 days post-fertlization (juvenile)
  • treatment condition: WT

Rows:57
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
42 29 phox2+ hindbrain neurons all phox2bb 544654 ZDB-GENE-050407-3 0.86 0.01 0
42 29 phox2+ hindbrain neurons all phox2a 404602 ZDB-GENE-000223-14 0.53 0.02 0
42 29 phox2+ hindbrain neurons all shox2 394171 ZDB-GENE-040426-1457 0.44 0.03 1.28238196837616e-318
42 29 phox2+ hindbrain neurons all meis2b 30066 ZDB-GENE-000210-23 0.52 0.05 3.68e-287
42 29 phox2+ hindbrain neurons all hoxb3a 30339 ZDB-GENE-990415-104 0.47 0.03 2.92e-273
42 29 phox2+ hindbrain neurons all si:ch211-136k14.3 ZDB-LINCRNAG-141216-357 0.25 0.006 3.08e-254
42 29 phox2+ hindbrain neurons all tlx2 170781 ZDB-GENE-020208-1 0.26 0.01 9.71e-220
42 29 phox2+ hindbrain neurons all tlx3b 266965 ZDB-GENE-021021-1 0.29 0.02 6.34e-166
42 29 phox2+ hindbrain neurons all lmx1bb 554360 ZDB-GENE-050114-2 0.3 0.04 6.2e-165
42 29 phox2+ hindbrain neurons all six2a 83415 ZDB-GENE-010412-1 0.18 0.01 2.56e-155
42 29 phox2+ hindbrain neurons all egr2b 30190 ZDB-GENE-980526-283 0.28 0.06 6.09e-129
42 29 phox2+ hindbrain neurons all nrgna 567608 ZDB-GENE-090710-4 0.43 0.16 7.03e-126
42 29 phox2+ hindbrain neurons all hoxb2a 30338 ZDB-GENE-990415-103 0.2 0.01 1.76e-123
42 29 phox2+ hindbrain neurons all hoxa3a 58049 ZDB-GENE-000823-3 0.26 0.02 6.49e-116
42 29 phox2+ hindbrain neurons all mab21l2 117234 ZDB-GENE-011101-3 0.37 0.08 2.79e-100
42 29 phox2+ hindbrain neurons all eya1 30436 ZDB-GENE-990712-18 0.19 0.04 2.3e-91
42 29 phox2+ hindbrain neurons all adcyap1b 335625 ZDB-GENE-041010-89 0.56 0.21 2.73e-91
42 29 phox2+ hindbrain neurons all cbln2b 560583 ZDB-GENE-070615-12 0.3 0.07 6.11e-76
42 29 phox2+ hindbrain neurons all scrt1a 564658 ZDB-GENE-080219-30 0.36 0.1 5.61e-74
42 29 phox2+ hindbrain neurons all cbln1 436793 ZDB-GENE-040718-226 0.31 0.08 1.35e-71
42 29 phox2+ hindbrain neurons all tfap2a 140618 ZDB-GENE-011212-6 0.34 0.09 5.68e-71
42 29 phox2+ hindbrain neurons all r3hdm1 110437712 NULL 0.78 0.49 6.29e-68
42 29 phox2+ hindbrain neurons all raraa 30680 ZDB-GENE-980526-284 0.23 0.05 2.58e-61
42 29 phox2+ hindbrain neurons all ebf1a 565310 ZDB-GENE-081028-51 0.38 0.17 2.63e-59
42 29 phox2+ hindbrain neurons all mab21l1 246091 ZDB-GENE-020516-1 0.48 0.2 9.33e-58
42 29 phox2+ hindbrain neurons all znf536 565481 ZDB-GENE-030616-624 0.45 0.23 1.94e-57
42 29 phox2+ hindbrain neurons all meis1b 170446 ZDB-GENE-020122-1 0.38 0.16 3.86e-55
42 29 phox2+ hindbrain neurons all zfhx4 556453 ZDB-GENE-070530-3 0.46 0.22 9.18e-52
42 29 phox2+ hindbrain neurons all znf703 114429 ZDB-GENE-010717-1 0.21 0.05 7.17e-50
42 29 phox2+ hindbrain neurons all neurod1 30169 ZDB-GENE-990415-172 0.08 0.3 4.09e-45
42 29 phox2+ hindbrain neurons all enc1 559101 ZDB-GENE-060531-140 0.27 0.11 1.03e-44
42 29 phox2+ hindbrain neurons all plxna4 325938 ZDB-GENE-030131-4663 0.36 0.16 5.57e-44
42 29 phox2+ hindbrain neurons all snap25b 30711 ZDB-GENE-980526-392 0.24 0.42 3.46e-43
42 29 phox2+ hindbrain neurons all islr2 541396 ZDB-GENE-050320-95 0.1 0.32 1.24e-40
42 29 phox2+ hindbrain neurons all si:ch73-386h18.1 563768 ZDB-GENE-050309-237 0.29 0.12 3.57e-39
42 29 phox2+ hindbrain neurons all tshz3b 565811 ZDB-GENE-100319-2 0.25 0.09 1.28e-37
42 29 phox2+ hindbrain neurons all robo2 60309 ZDB-GENE-001019-1 0.44 0.22 2.22e-36
42 29 phox2+ hindbrain neurons all qkia 30471 ZDB-GENE-990415-230 0.26 0.44 4.64e-36
42 29 phox2+ hindbrain neurons all zic3 368263 ZDB-GENE-030708-2 0.08 0.26 7.7e-36
42 29 phox2+ hindbrain neurons all slc6a1b 492490 ZDB-GENE-041114-57 0.15 0.31 1.99e-35
42 29 phox2+ hindbrain neurons all adgrl2a 57987 ZDB-GENE-000607-49 0.36 0.16 2.09e-35
42 29 phox2+ hindbrain neurons all zbtb18 100003157 ZDB-GENE-050419-73 0.13 0.32 3.27e-35
42 29 phox2+ hindbrain neurons all sox11b 30603 ZDB-GENE-980526-466 0.35 0.2 6.72e-34
42 29 phox2+ hindbrain neurons all si:ch211-222l21.1 795027 ZDB-GENE-030131-247 0.92 0.77 7.09e-33
42 29 phox2+ hindbrain neurons all cd99l2 323266 ZDB-GENE-030131-1986 0.79 0.63 2.3e-31
42 29 phox2+ hindbrain neurons all id2a 266599 ZDB-GENE-020910-1 0.38 0.22 4.35e-31
42 29 phox2+ hindbrain neurons all plxna1a 795761 ZDB-GENE-140106-137 0.1 0.27 1.99e-29
42 29 phox2+ hindbrain neurons all ccng1 171473 ZDB-GENE-020322-1 0.14 0.32 9.65e-29
42 29 phox2+ hindbrain neurons all hunk 564235 ZDB-GENE-050309-240 0.36 0.19 6.66e-27
42 29 phox2+ hindbrain neurons all zfhx3 100333211 ZDB-GENE-030131-7577 0.42 0.25 1.96e-25
42 29 phox2+ hindbrain neurons all cnp 325896 ZDB-GENE-030521-29 0.45 0.29 1.07e-24
42 29 phox2+ hindbrain neurons all rab6ba 558900 ZDB-GENE-050809-136 0.12 0.28 1.48e-23
42 29 phox2+ hindbrain neurons all rbfox1 449554 ZDB-GENE-040927-11 0.48 0.32 1.21e-22
42 29 phox2+ hindbrain neurons all ebf3a 567751 ZDB-GENE-070112-292 0.38 0.22 1.5e-21
42 29 phox2+ hindbrain neurons all nrp1a 353246 ZDB-GENE-030519-2 0.36 0.21 3.79e-20
42 29 phox2+ hindbrain neurons all nsg2 324971 ZDB-GENE-030131-3694 0.65 0.48 1.26e-19
42 29 phox2+ hindbrain neurons all sox4a 336346 ZDB-GENE-030131-8290 0.59 0.43 3.69e-17