Marker Genes
Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain
- tissue: Brain
- ontology: Brain
- genotype: Danio rerio TL/AB strain
- stage: 23-25 days post-fertlization (juvenile)
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 29608178
- subset name: all
- total genes: 3100
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE105010
Rows:93
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
42 | 38 | pitx2+ neurons2 | all | pitx2 | 30164 | ZDB-GENE-990714-27 | 0.82 | 0.01 | 0 | |||
42 | 38 | pitx2+ neurons2 | all | neurod6a | 114414 | ZDB-GENE-010608-1 | 0.79 | 0.07 | 0 | |||
42 | 38 | pitx2+ neurons2 | all | bhlhe22 | 393930 | ZDB-GENE-040426-1411 | 0.81 | 0.09 | 3.11936382467732e-315 | |||
42 | 38 | pitx2+ neurons2 | all | foxa1 | 30541 | ZDB-GENE-990415-78 | 0.28 | 0.01 | 1.4e-151 | |||
42 | 38 | pitx2+ neurons2 | all | r3hdm1 | 110437712 | NULL | 0.88 | 0.49 | 8.88e-112 | |||
42 | 38 | pitx2+ neurons2 | all | prdm8b | 557162 | ZDB-GENE-060526-174 | 0.51 | 0.1 | 7.31e-107 | |||
42 | 38 | pitx2+ neurons2 | all | neurod6b | 114415 | ZDB-GENE-010608-2 | 0.47 | 0.1 | 1.43e-87 | |||
42 | 38 | pitx2+ neurons2 | all | elavl4 | 30737 | ZDB-GENE-990415-246 | 0.91 | 0.58 | 1.49e-80 | |||
42 | 38 | pitx2+ neurons2 | all | pcp4a | 386848 | ZDB-GENE-031118-105 | 0.58 | 0.24 | 1.2e-65 | |||
42 | 38 | pitx2+ neurons2 | all | grm2b | 564461 | ZDB-GENE-060201-5 | 0.39 | 0.1 | 4.51e-62 | |||
42 | 38 | pitx2+ neurons2 | all | nhlh2 | 402968 | ZDB-GENE-040426-1809 | 0.36 | 0.09 | 1.7e-58 | |||
42 | 38 | pitx2+ neurons2 | all | mpped2 | 336959 | ZDB-GENE-030131-8903 | 0.32 | 0.09 | 1.93e-50 | |||
42 | 38 | pitx2+ neurons2 | all | podxl2 | 563754 | ZDB-GENE-030131-6241 | 0.61 | 0.31 | 7.12e-49 | |||
42 | 38 | pitx2+ neurons2 | all | irx1a | 403019 | ZDB-GENE-040707-1 | 0.28 | 0.06 | 3.41e-47 | |||
42 | 38 | pitx2+ neurons2 | all | maptb | 567833 | ZDB-GENE-081027-2 | 0.91 | 0.68 | 4.62e-47 | |||
42 | 38 | pitx2+ neurons2 | all | rab6ba | 558900 | ZDB-GENE-050809-136 | 0.59 | 0.27 | 9.29e-47 | |||
42 | 38 | pitx2+ neurons2 | all | cd99l2 | 323266 | ZDB-GENE-030131-1986 | 0.89 | 0.63 | 3.18e-46 | |||
42 | 38 | pitx2+ neurons2 | all | ebf1a | 565310 | ZDB-GENE-081028-51 | 0.45 | 0.17 | 6.17e-44 | |||
42 | 38 | pitx2+ neurons2 | all | zic2a | 58077 | ZDB-GENE-000710-4 | 0.07 | 0.3 | 5.44e-43 | |||
42 | 38 | pitx2+ neurons2 | all | sulf2b | 322056 | ZDB-GENE-030131-775 | 0.44 | 0.17 | 9.29e-43 | |||
42 | 38 | pitx2+ neurons2 | all | zbtb18 | 100003157 | ZDB-GENE-050419-73 | 0.61 | 0.31 | 1.69e-41 | |||
42 | 38 | pitx2+ neurons2 | all | qkia | 30471 | ZDB-GENE-990415-230 | 0.19 | 0.44 | 2.91e-41 | |||
42 | 38 | pitx2+ neurons2 | all | calb2a | 393691 | ZDB-GENE-040426-1677 | 0.25 | 0.06 | 7.53e-40 | |||
42 | 38 | pitx2+ neurons2 | all | egr1 | 30498 | ZDB-GENE-980526-320 | 0.06 | 0.3 | 1.23e-39 | |||
42 | 38 | pitx2+ neurons2 | all | irx2a | 394032 | ZDB-GENE-040426-1446 | 0.33 | 0.11 | 4.84e-39 | |||
42 | 38 | pitx2+ neurons2 | all | nxph1 | 437006 | ZDB-GENE-040718-231 | 0.25 | 0.06 | 5.88e-38 | |||
42 | 38 | pitx2+ neurons2 | all | si:ch1073-235m4.3 | ZDB-LINCRNAG-141216-217 | 0.28 | 0.09 | 2.78e-37 | ||||
42 | 38 | pitx2+ neurons2 | all | znf536 | 565481 | ZDB-GENE-030616-624 | 0.47 | 0.23 | 5.56e-35 | |||
42 | 38 | pitx2+ neurons2 | all | islr2 | 541396 | ZDB-GENE-050320-95 | 0.11 | 0.31 | 2.11e-34 | |||
42 | 38 | pitx2+ neurons2 | all | znf423 | 325643 | ZDB-GENE-030131-4368 | 0.31 | 0.1 | 9.01e-34 | |||
42 | 38 | pitx2+ neurons2 | all | tubb5 | 386701 | ZDB-GENE-031110-4 | 0.83 | 0.61 | 1.06e-33 | |||
42 | 38 | pitx2+ neurons2 | all | scrt1b | 541533 | ZDB-GENE-050327-72 | 0.24 | 0.06 | 1.36e-32 | |||
42 | 38 | pitx2+ neurons2 | all | vim | 140599 | ZDB-GENE-011212-3 | 0.34 | 0.12 | 4.43e-32 | |||
42 | 38 | pitx2+ neurons2 | all | ckbb | 140744 | ZDB-GENE-020103-2 | 0.96 | 0.78 | 1.09e-31 | |||
42 | 38 | pitx2+ neurons2 | all | zic3 | 368263 | ZDB-GENE-030708-2 | 0.05 | 0.26 | 2.28e-31 | |||
42 | 38 | pitx2+ neurons2 | all | lmo4a | 114412 | ZDB-GENE-010702-1 | 0.25 | 0.07 | 2.09e-30 | |||
42 | 38 | pitx2+ neurons2 | all | si:ch211-132d3.4 | 323155 | ZDB-LINCRNAG-141216-148 | 0.57 | 0.31 | 5.34e-30 | |||
42 | 38 | pitx2+ neurons2 | all | ywhag1 | 117604 | ZDB-GENE-011115-1 | 0.53 | 0.29 | 4.89e-29 | |||
42 | 38 | pitx2+ neurons2 | all | ntng1a | 569075 | ZDB-GENE-091118-13 | 0.22 | 0.06 | 1.85e-28 | |||
42 | 38 | pitx2+ neurons2 | all | znf423 | 325643 | ZDB-GENE-030131-4368 | 0.26 | 0.08 | 3.7e-28 | |||
42 | 38 | pitx2+ neurons2 | all | slc6a1b | 492490 | ZDB-GENE-041114-57 | 0.15 | 0.31 | 4.62e-28 | |||
42 | 38 | pitx2+ neurons2 | all | tuba1a | 573216 | ZDB-GENE-090507-4 | 0.93 | 0.75 | 1.45e-27 | |||
42 | 38 | pitx2+ neurons2 | all | syne1a | 569553 | ZDB-GENE-030131-4172 | 0.43 | 0.21 | 2.38e-27 | |||
42 | 38 | pitx2+ neurons2 | all | zgc:153426 | 767746 | ZDB-GENE-060929-220 | 0.85 | 0.66 | 2.91e-27 | |||
42 | 38 | pitx2+ neurons2 | all | mab21l1 | 246091 | ZDB-GENE-020516-1 | 0.04 | 0.21 | 1.04e-26 | |||
42 | 38 | pitx2+ neurons2 | all | hmgb3a | 561025 | ZDB-GENE-050428-1 | 0.91 | 0.75 | 7.12e-26 | |||
42 | 38 | pitx2+ neurons2 | all | nfixb | 678521 | ZDB-GENE-060421-5000 | 0.22 | 0.07 | 2.32e-25 | |||
42 | 38 | pitx2+ neurons2 | all | nrn1a | 436780 | ZDB-GENE-040718-212 | 0.39 | 0.18 | 1.34e-24 | |||
42 | 38 | pitx2+ neurons2 | all | egr4 | 795099 | ZDB-GENE-080204-90 | 0.22 | 0.37 | 2.08e-24 | |||
42 | 38 | pitx2+ neurons2 | all | gap43 | 30608 | ZDB-GENE-990415-87 | 0.67 | 0.43 | 7.61e-24 | |||
42 | 38 | pitx2+ neurons2 | all | tuba1b | 373080 | ZDB-GENE-030822-1 | 0.4 | 0.19 | 5.02e-23 | |||
42 | 38 | pitx2+ neurons2 | all | btbd6b | 553533 | ZDB-GENE-030829-65 | 0.24 | 0.08 | 1.16e-22 | |||
42 | 38 | pitx2+ neurons2 | all | nr2f2 | 30424 | ZDB-GENE-990415-252 | 0.32 | 0.15 | 1.28e-22 | |||
42 | 38 | pitx2+ neurons2 | all | ppp1r14ba | 564838 | ZDB-GENE-060825-331 | 0.4 | 0.2 | 1.75e-22 | |||
42 | 38 | pitx2+ neurons2 | all | olfm1b | 445092 | ZDB-GENE-040801-228 | 0.61 | 0.4 | 1.77e-22 | |||
42 | 38 | pitx2+ neurons2 | all | cspg5a | 558206 | ZDB-GENE-080425-4 | 0.78 | 0.57 | 1.76e-21 | |||
42 | 38 | pitx2+ neurons2 | all | elavl3 | 30732 | ZDB-GENE-980526-76 | 0.88 | 0.73 | 1.15e-19 | |||
42 | 38 | pitx2+ neurons2 | all | si:ch211-10a23.2 | 567812 | ZDB-GENE-090313-9 | 0.3 | 0.13 | 1.2e-19 | |||
42 | 38 | pitx2+ neurons2 | all | rgma | 414272 | ZDB-GENE-040527-1 | 0.3 | 0.13 | 1.54e-19 | |||
42 | 38 | pitx2+ neurons2 | all | hmgb1b | 795095 | ZDB-GENE-030131-8480 | 0.84 | 0.64 | 1.91e-19 | |||
42 | 38 | pitx2+ neurons2 | all | si:dkey-235h8.1 | ZDB-LINCRNAG-060526-268 | 0.37 | 0.19 | 5.63e-19 | ||||
42 | 38 | pitx2+ neurons2 | all | plxna1a | 795761 | ZDB-GENE-140106-137 | 0.46 | 0.26 | 9.02e-19 | |||
42 | 38 | pitx2+ neurons2 | all | stmn2a | 449651 | ZDB-GENE-041010-85 | 0.8 | 0.61 | 1.5e-18 | |||
42 | 38 | pitx2+ neurons2 | all | nfia | 556665 | ZDB-GENE-050208-501 | 0.37 | 0.19 | 2.22e-18 | |||
42 | 38 | pitx2+ neurons2 | all | rims1a | 100149357 | ZDB-GENE-090312-135 | 0.33 | 0.16 | 2.37e-18 | |||
42 | 38 | pitx2+ neurons2 | all | aff2 | 100330019 | ZDB-GENE-110411-190 | 0.46 | 0.26 | 5.65e-18 | |||
42 | 38 | pitx2+ neurons2 | all | caskb | 100148073 | ZDB-GENE-030131-4473 | 0.42 | 0.23 | 1.29e-17 | |||
42 | 38 | pitx2+ neurons2 | all | elovl6 | 317738 | ZDB-GENE-030114-1 | 0.52 | 0.32 | 1.46e-17 | |||
42 | 38 | pitx2+ neurons2 | all | stmn2b | 100003563 | ZDB-GENE-050522-207 | 0.69 | 0.49 | 1.52e-17 | |||
42 | 38 | pitx2+ neurons2 | all | si:ch211-137a8.4 | 560240 | ZDB-GENE-030131-3742 | 0.22 | 0.4 | 2.01e-17 | |||
42 | 38 | pitx2+ neurons2 | all | slc17a6b | 100149756 | ZDB-GENE-030616-554 | 0.33 | 0.17 | 2.9e-17 | |||
42 | 38 | pitx2+ neurons2 | all | robo2 | 60309 | ZDB-GENE-001019-1 | 0.38 | 0.22 | 7.69e-17 | |||
42 | 38 | pitx2+ neurons2 | all | ephb3a | 30313 | ZDB-GENE-990415-60 | 0.39 | 0.21 | 1.47e-16 | |||
42 | 38 | pitx2+ neurons2 | all | tmem59l | 406646 | ZDB-GENE-040426-2651 | 0.65 | 0.46 | 1.64e-16 | |||
42 | 38 | pitx2+ neurons2 | all | plxna4 | 325938 | ZDB-GENE-030131-4663 | 0.33 | 0.17 | 1.68e-16 | |||
42 | 38 | pitx2+ neurons2 | all | jpt1b | 402906 | ZDB-GENE-030131-2784 | 0.65 | 0.47 | 3.78e-16 | |||
42 | 38 | pitx2+ neurons2 | all | sox4a | 336346 | ZDB-GENE-030131-8290 | 0.58 | 0.43 | 4.24e-16 | |||
42 | 38 | pitx2+ neurons2 | all | cd9a | 322455 | ZDB-GENE-030131-1175 | 0.33 | 0.16 | 5.88e-16 | |||
42 | 38 | pitx2+ neurons2 | all | midn | 323713 | ZDB-GENE-030131-2433 | 0.54 | 0.36 | 4.13e-15 | |||
42 | 38 | pitx2+ neurons2 | all | si:dkeyp-75h12.5 | 566718 | ZDB-GENE-030131-7914 | 0.57 | 0.39 | 6.21e-15 | |||
42 | 38 | pitx2+ neurons2 | all | nkain1 | 393517 | ZDB-GENE-040426-1472 | 0.4 | 0.23 | 6.93e-15 | |||
42 | 38 | pitx2+ neurons2 | all | necab2 | 565258 | ZDB-GENE-050706-167 | 0.39 | 0.22 | 1.57e-14 | |||
42 | 38 | pitx2+ neurons2 | all | cnp | 325896 | ZDB-GENE-030521-29 | 0.46 | 0.29 | 2.52e-14 | |||
42 | 38 | pitx2+ neurons2 | all | mllt11 | 563531 | ZDB-GENE-030131-3007 | 0.71 | 0.55 | 2.97e-14 | |||
42 | 38 | pitx2+ neurons2 | all | fam13b | 568603 | ZDB-GENE-030131-4913 | 0.47 | 0.3 | 9.71e-14 | |||
42 | 38 | pitx2+ neurons2 | all | celf2 | 373117 | ZDB-GENE-030826-35 | 0.48 | 0.31 | 1.26e-13 | |||
42 | 38 | pitx2+ neurons2 | all | dclk1b | 100151759 | ZDB-GENE-080516-7 | 0.6 | 0.42 | 2.59e-13 | |||
42 | 38 | pitx2+ neurons2 | all | rab6bb | 541339 | ZDB-GENE-050320-28 | 0.48 | 0.32 | 4.93e-13 | |||
42 | 38 | pitx2+ neurons2 | all | fscn1b | 570314 | ZDB-GENE-120507-1 | 0.42 | 0.26 | 9.86e-13 | |||
42 | 38 | pitx2+ neurons2 | all | zc4h2 | 323487 | ZDB-GENE-030131-2207 | 0.58 | 0.41 | 4.03e-12 | |||
42 | 38 | pitx2+ neurons2 | all | chd5 | 553422 | ZDB-GENE-120314-2 | 0.39 | 0.24 | 4.57e-12 | |||
42 | 38 | pitx2+ neurons2 | all | ywhaz | 336610 | ZDB-GENE-030131-8554 | 0.63 | 0.48 | 1.26e-11 | |||
42 | 38 | pitx2+ neurons2 | all | celf3a | 57922 | ZDB-GENE-000501-2 | 0.47 | 0.31 | 6.25e-11 |