Marker Genes

Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

  • tissue: Brain
  • ontology: Brain
  • genotype: Danio rerio TL/AB strain
  • stage: 23-25 days post-fertlization (juvenile)
  • treatment condition: WT

Rows:93
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
42 38 pitx2+ neurons2 all pitx2 30164 ZDB-GENE-990714-27 0.82 0.01 0
42 38 pitx2+ neurons2 all neurod6a 114414 ZDB-GENE-010608-1 0.79 0.07 0
42 38 pitx2+ neurons2 all bhlhe22 393930 ZDB-GENE-040426-1411 0.81 0.09 3.11936382467732e-315
42 38 pitx2+ neurons2 all foxa1 30541 ZDB-GENE-990415-78 0.28 0.01 1.4e-151
42 38 pitx2+ neurons2 all r3hdm1 110437712 NULL 0.88 0.49 8.88e-112
42 38 pitx2+ neurons2 all prdm8b 557162 ZDB-GENE-060526-174 0.51 0.1 7.31e-107
42 38 pitx2+ neurons2 all neurod6b 114415 ZDB-GENE-010608-2 0.47 0.1 1.43e-87
42 38 pitx2+ neurons2 all elavl4 30737 ZDB-GENE-990415-246 0.91 0.58 1.49e-80
42 38 pitx2+ neurons2 all pcp4a 386848 ZDB-GENE-031118-105 0.58 0.24 1.2e-65
42 38 pitx2+ neurons2 all grm2b 564461 ZDB-GENE-060201-5 0.39 0.1 4.51e-62
42 38 pitx2+ neurons2 all nhlh2 402968 ZDB-GENE-040426-1809 0.36 0.09 1.7e-58
42 38 pitx2+ neurons2 all mpped2 336959 ZDB-GENE-030131-8903 0.32 0.09 1.93e-50
42 38 pitx2+ neurons2 all podxl2 563754 ZDB-GENE-030131-6241 0.61 0.31 7.12e-49
42 38 pitx2+ neurons2 all irx1a 403019 ZDB-GENE-040707-1 0.28 0.06 3.41e-47
42 38 pitx2+ neurons2 all maptb 567833 ZDB-GENE-081027-2 0.91 0.68 4.62e-47
42 38 pitx2+ neurons2 all rab6ba 558900 ZDB-GENE-050809-136 0.59 0.27 9.29e-47
42 38 pitx2+ neurons2 all cd99l2 323266 ZDB-GENE-030131-1986 0.89 0.63 3.18e-46
42 38 pitx2+ neurons2 all ebf1a 565310 ZDB-GENE-081028-51 0.45 0.17 6.17e-44
42 38 pitx2+ neurons2 all zic2a 58077 ZDB-GENE-000710-4 0.07 0.3 5.44e-43
42 38 pitx2+ neurons2 all sulf2b 322056 ZDB-GENE-030131-775 0.44 0.17 9.29e-43
42 38 pitx2+ neurons2 all zbtb18 100003157 ZDB-GENE-050419-73 0.61 0.31 1.69e-41
42 38 pitx2+ neurons2 all qkia 30471 ZDB-GENE-990415-230 0.19 0.44 2.91e-41
42 38 pitx2+ neurons2 all calb2a 393691 ZDB-GENE-040426-1677 0.25 0.06 7.53e-40
42 38 pitx2+ neurons2 all egr1 30498 ZDB-GENE-980526-320 0.06 0.3 1.23e-39
42 38 pitx2+ neurons2 all irx2a 394032 ZDB-GENE-040426-1446 0.33 0.11 4.84e-39
42 38 pitx2+ neurons2 all nxph1 437006 ZDB-GENE-040718-231 0.25 0.06 5.88e-38
42 38 pitx2+ neurons2 all si:ch1073-235m4.3 ZDB-LINCRNAG-141216-217 0.28 0.09 2.78e-37
42 38 pitx2+ neurons2 all znf536 565481 ZDB-GENE-030616-624 0.47 0.23 5.56e-35
42 38 pitx2+ neurons2 all islr2 541396 ZDB-GENE-050320-95 0.11 0.31 2.11e-34
42 38 pitx2+ neurons2 all znf423 325643 ZDB-GENE-030131-4368 0.31 0.1 9.01e-34
42 38 pitx2+ neurons2 all tubb5 386701 ZDB-GENE-031110-4 0.83 0.61 1.06e-33
42 38 pitx2+ neurons2 all scrt1b 541533 ZDB-GENE-050327-72 0.24 0.06 1.36e-32
42 38 pitx2+ neurons2 all vim 140599 ZDB-GENE-011212-3 0.34 0.12 4.43e-32
42 38 pitx2+ neurons2 all ckbb 140744 ZDB-GENE-020103-2 0.96 0.78 1.09e-31
42 38 pitx2+ neurons2 all zic3 368263 ZDB-GENE-030708-2 0.05 0.26 2.28e-31
42 38 pitx2+ neurons2 all lmo4a 114412 ZDB-GENE-010702-1 0.25 0.07 2.09e-30
42 38 pitx2+ neurons2 all si:ch211-132d3.4 323155 ZDB-LINCRNAG-141216-148 0.57 0.31 5.34e-30
42 38 pitx2+ neurons2 all ywhag1 117604 ZDB-GENE-011115-1 0.53 0.29 4.89e-29
42 38 pitx2+ neurons2 all ntng1a 569075 ZDB-GENE-091118-13 0.22 0.06 1.85e-28
42 38 pitx2+ neurons2 all znf423 325643 ZDB-GENE-030131-4368 0.26 0.08 3.7e-28
42 38 pitx2+ neurons2 all slc6a1b 492490 ZDB-GENE-041114-57 0.15 0.31 4.62e-28
42 38 pitx2+ neurons2 all tuba1a 573216 ZDB-GENE-090507-4 0.93 0.75 1.45e-27
42 38 pitx2+ neurons2 all syne1a 569553 ZDB-GENE-030131-4172 0.43 0.21 2.38e-27
42 38 pitx2+ neurons2 all zgc:153426 767746 ZDB-GENE-060929-220 0.85 0.66 2.91e-27
42 38 pitx2+ neurons2 all mab21l1 246091 ZDB-GENE-020516-1 0.04 0.21 1.04e-26
42 38 pitx2+ neurons2 all hmgb3a 561025 ZDB-GENE-050428-1 0.91 0.75 7.12e-26
42 38 pitx2+ neurons2 all nfixb 678521 ZDB-GENE-060421-5000 0.22 0.07 2.32e-25
42 38 pitx2+ neurons2 all nrn1a 436780 ZDB-GENE-040718-212 0.39 0.18 1.34e-24
42 38 pitx2+ neurons2 all egr4 795099 ZDB-GENE-080204-90 0.22 0.37 2.08e-24
42 38 pitx2+ neurons2 all gap43 30608 ZDB-GENE-990415-87 0.67 0.43 7.61e-24
42 38 pitx2+ neurons2 all tuba1b 373080 ZDB-GENE-030822-1 0.4 0.19 5.02e-23
42 38 pitx2+ neurons2 all btbd6b 553533 ZDB-GENE-030829-65 0.24 0.08 1.16e-22
42 38 pitx2+ neurons2 all nr2f2 30424 ZDB-GENE-990415-252 0.32 0.15 1.28e-22
42 38 pitx2+ neurons2 all ppp1r14ba 564838 ZDB-GENE-060825-331 0.4 0.2 1.75e-22
42 38 pitx2+ neurons2 all olfm1b 445092 ZDB-GENE-040801-228 0.61 0.4 1.77e-22
42 38 pitx2+ neurons2 all cspg5a 558206 ZDB-GENE-080425-4 0.78 0.57 1.76e-21
42 38 pitx2+ neurons2 all elavl3 30732 ZDB-GENE-980526-76 0.88 0.73 1.15e-19
42 38 pitx2+ neurons2 all si:ch211-10a23.2 567812 ZDB-GENE-090313-9 0.3 0.13 1.2e-19
42 38 pitx2+ neurons2 all rgma 414272 ZDB-GENE-040527-1 0.3 0.13 1.54e-19
42 38 pitx2+ neurons2 all hmgb1b 795095 ZDB-GENE-030131-8480 0.84 0.64 1.91e-19
42 38 pitx2+ neurons2 all si:dkey-235h8.1 ZDB-LINCRNAG-060526-268 0.37 0.19 5.63e-19
42 38 pitx2+ neurons2 all plxna1a 795761 ZDB-GENE-140106-137 0.46 0.26 9.02e-19
42 38 pitx2+ neurons2 all stmn2a 449651 ZDB-GENE-041010-85 0.8 0.61 1.5e-18
42 38 pitx2+ neurons2 all nfia 556665 ZDB-GENE-050208-501 0.37 0.19 2.22e-18
42 38 pitx2+ neurons2 all rims1a 100149357 ZDB-GENE-090312-135 0.33 0.16 2.37e-18
42 38 pitx2+ neurons2 all aff2 100330019 ZDB-GENE-110411-190 0.46 0.26 5.65e-18
42 38 pitx2+ neurons2 all caskb 100148073 ZDB-GENE-030131-4473 0.42 0.23 1.29e-17
42 38 pitx2+ neurons2 all elovl6 317738 ZDB-GENE-030114-1 0.52 0.32 1.46e-17
42 38 pitx2+ neurons2 all stmn2b 100003563 ZDB-GENE-050522-207 0.69 0.49 1.52e-17
42 38 pitx2+ neurons2 all si:ch211-137a8.4 560240 ZDB-GENE-030131-3742 0.22 0.4 2.01e-17
42 38 pitx2+ neurons2 all slc17a6b 100149756 ZDB-GENE-030616-554 0.33 0.17 2.9e-17
42 38 pitx2+ neurons2 all robo2 60309 ZDB-GENE-001019-1 0.38 0.22 7.69e-17
42 38 pitx2+ neurons2 all ephb3a 30313 ZDB-GENE-990415-60 0.39 0.21 1.47e-16
42 38 pitx2+ neurons2 all tmem59l 406646 ZDB-GENE-040426-2651 0.65 0.46 1.64e-16
42 38 pitx2+ neurons2 all plxna4 325938 ZDB-GENE-030131-4663 0.33 0.17 1.68e-16
42 38 pitx2+ neurons2 all jpt1b 402906 ZDB-GENE-030131-2784 0.65 0.47 3.78e-16
42 38 pitx2+ neurons2 all sox4a 336346 ZDB-GENE-030131-8290 0.58 0.43 4.24e-16
42 38 pitx2+ neurons2 all cd9a 322455 ZDB-GENE-030131-1175 0.33 0.16 5.88e-16
42 38 pitx2+ neurons2 all midn 323713 ZDB-GENE-030131-2433 0.54 0.36 4.13e-15
42 38 pitx2+ neurons2 all si:dkeyp-75h12.5 566718 ZDB-GENE-030131-7914 0.57 0.39 6.21e-15
42 38 pitx2+ neurons2 all nkain1 393517 ZDB-GENE-040426-1472 0.4 0.23 6.93e-15
42 38 pitx2+ neurons2 all necab2 565258 ZDB-GENE-050706-167 0.39 0.22 1.57e-14
42 38 pitx2+ neurons2 all cnp 325896 ZDB-GENE-030521-29 0.46 0.29 2.52e-14
42 38 pitx2+ neurons2 all mllt11 563531 ZDB-GENE-030131-3007 0.71 0.55 2.97e-14
42 38 pitx2+ neurons2 all fam13b 568603 ZDB-GENE-030131-4913 0.47 0.3 9.71e-14
42 38 pitx2+ neurons2 all celf2 373117 ZDB-GENE-030826-35 0.48 0.31 1.26e-13
42 38 pitx2+ neurons2 all dclk1b 100151759 ZDB-GENE-080516-7 0.6 0.42 2.59e-13
42 38 pitx2+ neurons2 all rab6bb 541339 ZDB-GENE-050320-28 0.48 0.32 4.93e-13
42 38 pitx2+ neurons2 all fscn1b 570314 ZDB-GENE-120507-1 0.42 0.26 9.86e-13
42 38 pitx2+ neurons2 all zc4h2 323487 ZDB-GENE-030131-2207 0.58 0.41 4.03e-12
42 38 pitx2+ neurons2 all chd5 553422 ZDB-GENE-120314-2 0.39 0.24 4.57e-12
42 38 pitx2+ neurons2 all ywhaz 336610 ZDB-GENE-030131-8554 0.63 0.48 1.26e-11
42 38 pitx2+ neurons2 all celf3a 57922 ZDB-GENE-000501-2 0.47 0.31 6.25e-11