Marker Genes
Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain
- tissue: Brain
- ontology: Brain
- genotype: Danio rerio TL/AB strain
- stage: 23-25 days post-fertlization (juvenile)
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 29608178
- subset name: all
- total genes: 3100
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE105010
Rows:34
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
42 | 23 | GABAergic hindbrain neurons | all | hoxb3a | 30339 | ZDB-GENE-990415-104 | 0.66 | 0.03 | 0 | |||
42 | 23 | GABAergic hindbrain neurons | all | hoxb5a | 30317 | ZDB-GENE-980526-70 | 0.39 | 0.009 | 0 | |||
42 | 23 | GABAergic hindbrain neurons | all | hoxb5b | 58052 | ZDB-GENE-000823-6 | 0.39 | 0.009 | 0 | |||
42 | 23 | GABAergic hindbrain neurons | all | hoxa3a | 58049 | ZDB-GENE-000823-3 | 0.53 | 0.02 | 0 | |||
42 | 23 | GABAergic hindbrain neurons | all | hoxb2a | 30338 | ZDB-GENE-990415-103 | 0.27 | 0.01 | 2.35e-265 | |||
42 | 23 | GABAergic hindbrain neurons | all | hoxd4a | 30329 | ZDB-GENE-980526-214 | 0.23 | 0.01 | 5.93e-240 | |||
42 | 23 | GABAergic hindbrain neurons | all | hoxd3a | 30349 | ZDB-GENE-990415-120 | 0.27 | 0.02 | 1.47e-225 | |||
42 | 23 | GABAergic hindbrain neurons | all | lmo4a | 114412 | ZDB-GENE-010702-1 | 0.26 | 0.07 | 1.25e-156 | |||
42 | 23 | GABAergic hindbrain neurons | all | mab21l2 | 117234 | ZDB-GENE-011101-3 | 0.36 | 0.08 | 1.75e-145 | |||
42 | 23 | GABAergic hindbrain neurons | all | pax2a | 30425 | ZDB-GENE-990415-8 | 0.24 | 0.04 | 2.33e-102 | |||
42 | 23 | GABAergic hindbrain neurons | all | klhl14 | 794722 | ZDB-GENE-091204-223 | 0.19 | 0.03 | 7.71e-99 | |||
42 | 23 | GABAergic hindbrain neurons | all | hoxc3a | 30421 | ZDB-GENE-980526-532 | 0.21 | 0.05 | 2e-93 | |||
42 | 23 | GABAergic hindbrain neurons | all | elavl4 | 30737 | ZDB-GENE-990415-246 | 0.84 | 0.58 | 3.47e-77 | |||
42 | 23 | GABAergic hindbrain neurons | all | scrt1a | 564658 | ZDB-GENE-080219-30 | 0.26 | 0.1 | 3.01e-74 | |||
42 | 23 | GABAergic hindbrain neurons | all | plxna4 | 325938 | ZDB-GENE-030131-4663 | 0.37 | 0.16 | 1.17e-61 | |||
42 | 23 | GABAergic hindbrain neurons | all | cd99l2 | 323266 | ZDB-GENE-030131-1986 | 0.83 | 0.63 | 2.25e-57 | |||
42 | 23 | GABAergic hindbrain neurons | all | glra1 | 30676 | ZDB-GENE-991117-1 | 0.22 | 0.07 | 8.97e-56 | |||
42 | 23 | GABAergic hindbrain neurons | all | zbtb18 | 100003157 | ZDB-GENE-050419-73 | 0.14 | 0.32 | 9.71e-56 | |||
42 | 23 | GABAergic hindbrain neurons | all | pbx3b | 58140 | ZDB-GENE-000405-3 | 0.53 | 0.31 | 7.63e-49 | |||
42 | 23 | GABAergic hindbrain neurons | all | tfap2a | 140618 | ZDB-GENE-011212-6 | 0.25 | 0.09 | 1.51e-44 | |||
42 | 23 | GABAergic hindbrain neurons | all | nsg2 | 324971 | ZDB-GENE-030131-3694 | 0.68 | 0.48 | 9.58e-44 | |||
42 | 23 | GABAergic hindbrain neurons | all | islr2 | 541396 | ZDB-GENE-050320-95 | 0.12 | 0.32 | 1.53e-43 | |||
42 | 23 | GABAergic hindbrain neurons | all | neurod6b | 114415 | ZDB-GENE-010608-2 | 0.26 | 0.1 | 4.92e-43 | |||
42 | 23 | GABAergic hindbrain neurons | all | mab21l1 | 246091 | ZDB-GENE-020516-1 | 0.41 | 0.2 | 7.58e-43 | |||
42 | 23 | GABAergic hindbrain neurons | all | tuba2 | 406303 | ZDB-GENE-040426-1970 | 0.79 | 0.61 | 7.93e-41 | |||
42 | 23 | GABAergic hindbrain neurons | all | ccng1 | 171473 | ZDB-GENE-020322-1 | 0.16 | 0.32 | 7.11e-33 | |||
42 | 23 | GABAergic hindbrain neurons | all | sox4a | 336346 | ZDB-GENE-030131-8290 | 0.6 | 0.43 | 4.8e-31 | |||
42 | 23 | GABAergic hindbrain neurons | all | tmem59l | 406646 | ZDB-GENE-040426-2651 | 0.63 | 0.46 | 1.39e-29 | |||
42 | 23 | GABAergic hindbrain neurons | all | camta1b | 497465 | ZDB-GENE-080229-1 | 0.48 | 0.33 | 1.13e-28 | |||
42 | 23 | GABAergic hindbrain neurons | all | podxl2 | 563754 | ZDB-GENE-030131-6241 | 0.47 | 0.31 | 2.98e-26 | |||
42 | 23 | GABAergic hindbrain neurons | all | pbx1a | 58138 | ZDB-GENE-000405-1 | 0.41 | 0.26 | 8.48e-26 | |||
42 | 23 | GABAergic hindbrain neurons | all | stmn4 | 406710 | ZDB-GENE-040426-2732 | 0.68 | 0.52 | 1.19e-22 | |||
42 | 23 | GABAergic hindbrain neurons | all | nat8l | 564754 | ZDB-GENE-030729-4 | 0.59 | 0.43 | 1.63e-21 | |||
42 | 23 | GABAergic hindbrain neurons | all | tmsb | 402820 | ZDB-GENE-050307-5 | 0.53 | 0.38 | 7.64e-19 |