Marker Genes

Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

  • tissue: Brain
  • ontology: Brain
  • genotype: Danio rerio TL/AB strain
  • stage: 23-25 days post-fertlization (juvenile)
  • treatment condition: WT

Rows:34
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
42 23 GABAergic hindbrain neurons all hoxb3a 30339 ZDB-GENE-990415-104 0.66 0.03 0
42 23 GABAergic hindbrain neurons all hoxb5a 30317 ZDB-GENE-980526-70 0.39 0.009 0
42 23 GABAergic hindbrain neurons all hoxb5b 58052 ZDB-GENE-000823-6 0.39 0.009 0
42 23 GABAergic hindbrain neurons all hoxa3a 58049 ZDB-GENE-000823-3 0.53 0.02 0
42 23 GABAergic hindbrain neurons all hoxb2a 30338 ZDB-GENE-990415-103 0.27 0.01 2.35e-265
42 23 GABAergic hindbrain neurons all hoxd4a 30329 ZDB-GENE-980526-214 0.23 0.01 5.93e-240
42 23 GABAergic hindbrain neurons all hoxd3a 30349 ZDB-GENE-990415-120 0.27 0.02 1.47e-225
42 23 GABAergic hindbrain neurons all lmo4a 114412 ZDB-GENE-010702-1 0.26 0.07 1.25e-156
42 23 GABAergic hindbrain neurons all mab21l2 117234 ZDB-GENE-011101-3 0.36 0.08 1.75e-145
42 23 GABAergic hindbrain neurons all pax2a 30425 ZDB-GENE-990415-8 0.24 0.04 2.33e-102
42 23 GABAergic hindbrain neurons all klhl14 794722 ZDB-GENE-091204-223 0.19 0.03 7.71e-99
42 23 GABAergic hindbrain neurons all hoxc3a 30421 ZDB-GENE-980526-532 0.21 0.05 2e-93
42 23 GABAergic hindbrain neurons all elavl4 30737 ZDB-GENE-990415-246 0.84 0.58 3.47e-77
42 23 GABAergic hindbrain neurons all scrt1a 564658 ZDB-GENE-080219-30 0.26 0.1 3.01e-74
42 23 GABAergic hindbrain neurons all plxna4 325938 ZDB-GENE-030131-4663 0.37 0.16 1.17e-61
42 23 GABAergic hindbrain neurons all cd99l2 323266 ZDB-GENE-030131-1986 0.83 0.63 2.25e-57
42 23 GABAergic hindbrain neurons all glra1 30676 ZDB-GENE-991117-1 0.22 0.07 8.97e-56
42 23 GABAergic hindbrain neurons all zbtb18 100003157 ZDB-GENE-050419-73 0.14 0.32 9.71e-56
42 23 GABAergic hindbrain neurons all pbx3b 58140 ZDB-GENE-000405-3 0.53 0.31 7.63e-49
42 23 GABAergic hindbrain neurons all tfap2a 140618 ZDB-GENE-011212-6 0.25 0.09 1.51e-44
42 23 GABAergic hindbrain neurons all nsg2 324971 ZDB-GENE-030131-3694 0.68 0.48 9.58e-44
42 23 GABAergic hindbrain neurons all islr2 541396 ZDB-GENE-050320-95 0.12 0.32 1.53e-43
42 23 GABAergic hindbrain neurons all neurod6b 114415 ZDB-GENE-010608-2 0.26 0.1 4.92e-43
42 23 GABAergic hindbrain neurons all mab21l1 246091 ZDB-GENE-020516-1 0.41 0.2 7.58e-43
42 23 GABAergic hindbrain neurons all tuba2 406303 ZDB-GENE-040426-1970 0.79 0.61 7.93e-41
42 23 GABAergic hindbrain neurons all ccng1 171473 ZDB-GENE-020322-1 0.16 0.32 7.11e-33
42 23 GABAergic hindbrain neurons all sox4a 336346 ZDB-GENE-030131-8290 0.6 0.43 4.8e-31
42 23 GABAergic hindbrain neurons all tmem59l 406646 ZDB-GENE-040426-2651 0.63 0.46 1.39e-29
42 23 GABAergic hindbrain neurons all camta1b 497465 ZDB-GENE-080229-1 0.48 0.33 1.13e-28
42 23 GABAergic hindbrain neurons all podxl2 563754 ZDB-GENE-030131-6241 0.47 0.31 2.98e-26
42 23 GABAergic hindbrain neurons all pbx1a 58138 ZDB-GENE-000405-1 0.41 0.26 8.48e-26
42 23 GABAergic hindbrain neurons all stmn4 406710 ZDB-GENE-040426-2732 0.68 0.52 1.19e-22
42 23 GABAergic hindbrain neurons all nat8l 564754 ZDB-GENE-030729-4 0.59 0.43 1.63e-21
42 23 GABAergic hindbrain neurons all tmsb 402820 ZDB-GENE-050307-5 0.53 0.38 7.64e-19