Marker Genes
Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain
- tissue: Brain
- ontology: Brain
- genotype: Danio rerio TL/AB strain
- stage: 23-25 days post-fertlization (juvenile)
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 29608178
- subset name: all
- total genes: 3100
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE105010
Rows:60
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
42 | 3 | tcf7I2+_barhl2+ neurons | all | SPATC1 | NULL | 0.72 | 0.17 | 0 | ||||
42 | 3 | tcf7I2+_barhl2+ neurons | all | meis2a | 170454 | ZDB-GENE-020122-2 | 0.58 | 0.14 | 0 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | zfhx4 | 556453 | ZDB-GENE-070530-3 | 0.62 | 0.21 | 0 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | zfhx3 | 100333211 | ZDB-GENE-030131-7577 | 0.67 | 0.23 | 0 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | tubb5 | 386701 | ZDB-GENE-031110-4 | 0.86 | 0.6 | 0 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | cd99l2 | 323266 | ZDB-GENE-030131-1986 | 0.9 | 0.62 | 0 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | lhx9 | 550405 | ZDB-GENE-050417-210 | 0.37 | 0.06 | 0 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | SONP1 | NULL | 0.73 | 0.42 | 1.99e-287 | ||||
42 | 3 | tcf7I2+_barhl2+ neurons | all | pbx3b | 58140 | ZDB-GENE-000405-3 | 0.56 | 0.3 | 2.18e-270 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | maptb | 567833 | ZDB-GENE-081027-2 | 0.88 | 0.67 | 1.89e-268 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | stmn2b | 100003563 | ZDB-GENE-050522-207 | 0.76 | 0.47 | 8.03e-250 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | barhl2 | 100001699 | ZDB-GENE-050913-153 | 0.31 | 0.08 | 3.8e-237 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | EXPH5 | NULL | 0.47 | 0.22 | 3.11e-214 | ||||
42 | 3 | tcf7I2+_barhl2+ neurons | all | neurod1 | 30169 | ZDB-GENE-990415-172 | 0.08 | 0.31 | 5.39e-204 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | tmsb | 402820 | ZDB-GENE-050307-5 | 0.62 | 0.37 | 4.69e-203 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | mab21l1 | 246091 | ZDB-GENE-020516-1 | 0.45 | 0.2 | 6.31e-192 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | cbln2b | 560583 | ZDB-GENE-070615-12 | 0.24 | 0.06 | 1.3e-188 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | zbtb18 | 100003157 | ZDB-GENE-050419-73 | 0.11 | 0.32 | 8.58e-183 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | junba | 407086 | ZDB-GENE-040426-2172 | 0.08 | 0.28 | 1.74e-176 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | dpysl3 | 553166 | ZDB-GENE-050720-2 | 0.8 | 0.6 | 2.96e-171 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | zc4h2 | 323487 | ZDB-GENE-030131-2207 | 0.64 | 0.4 | 2.94e-164 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | qkia | 30471 | ZDB-GENE-990415-230 | 0.27 | 0.45 | 3.49e-162 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | marcksb | 323201 | ZDB-GENE-030131-1921 | 0.87 | 0.71 | 2.78e-157 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | jun | 335916 | ZDB-GENE-030131-7859 | 0.24 | 0.46 | 2.19e-151 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | ccng1 | 171473 | ZDB-GENE-020322-1 | 0.12 | 0.32 | 9.98e-151 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | adcyap1b | 335625 | ZDB-GENE-041010-89 | 0.42 | 0.21 | 1.52e-149 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | slc6a1b | 492490 | ZDB-GENE-041114-57 | 0.16 | 0.32 | 2.89e-147 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | tmsb2 | 566329 | ZDB-GENE-070126-5 | 0.7 | 0.5 | 9.46e-137 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | slc32a1 | 798575 | ZDB-GENE-061201-1 | 0.04 | 0.19 | 2.44e-130 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | si:ch211-132d3.4 | 323155 | ZDB-LINCRNAG-141216-148 | 0.12 | 0.32 | 7.95e-130 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | cnp | 325896 | ZDB-GENE-030521-29 | 0.48 | 0.28 | 5.9e-126 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | alcama | 30194 | ZDB-GENE-990415-30 | 0.31 | 0.15 | 1.97e-124 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | dclk1b | 100151759 | ZDB-GENE-080516-7 | 0.59 | 0.42 | 6.72e-124 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | si:ch73-386h18.1 | 563768 | ZDB-GENE-050309-237 | 0.28 | 0.11 | 1.46e-123 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | robo2 | 60309 | ZDB-GENE-001019-1 | 0.41 | 0.22 | 2.23e-122 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | rnd1a | 405780 | ZDB-GENE-040630-6 | 0.31 | 0.14 | 3.14e-122 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | ppp1r14ba | 564838 | ZDB-GENE-060825-331 | 0.38 | 0.19 | 3.29e-117 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | mllt11 | 563531 | ZDB-GENE-030131-3007 | 0.74 | 0.54 | 8.54e-115 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | nsg2 | 324971 | ZDB-GENE-030131-3694 | 0.68 | 0.47 | 1.78e-114 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | marcksl1a | 406407 | ZDB-GENE-040426-2146 | 0.8 | 0.64 | 2.46e-114 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | bcl11ba | 100093707 | ZDB-GENE-061207-62 | 0.31 | 0.15 | 4.36e-108 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | tuba2 | 406303 | ZDB-GENE-040426-1970 | 0.77 | 0.6 | 1.8e-106 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | pbx1a | 58138 | ZDB-GENE-000405-1 | 0.43 | 0.25 | 2.94e-102 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | h1f0 | 321618 | ZDB-GENE-030131-337 | 0.38 | 0.56 | 2.69e-101 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | gadd45ba | 406304 | ZDB-GENE-040426-1971 | 0.33 | 0.49 | 4.55e-93 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | ctnnbip1 | 58117 | ZDB-GENE-000906-3 | 0.39 | 0.23 | 4.91e-93 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | zic2a | 58077 | ZDB-GENE-000710-4 | 0.14 | 0.31 | 1.65e-92 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | tob1b | 406245 | ZDB-GENE-040426-2151 | 0.29 | 0.45 | 4.94e-89 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | ywhag2 | 560560 | ZDB-GENE-061023-2 | 0.76 | 0.6 | 5.11e-88 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | crmp1 | 553756 | ZDB-GENE-050720-1 | 0.39 | 0.24 | 1.05e-86 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | add2 | 570147 | ZDB-GENE-080718-4 | 0.56 | 0.4 | 7.89e-83 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | tubb2b | 641421 | ZDB-GENE-030131-722 | 0.72 | 0.56 | 8.75e-83 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | nell2b | 336082 | ZDB-GENE-030131-8026 | 0.45 | 0.28 | 2.84e-79 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | runx1t1 | 767809 | ZDB-GENE-060929-164 | 0.41 | 0.26 | 7.3e-79 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | jpt1b | 402906 | ZDB-GENE-030131-2784 | 0.62 | 0.47 | 5.13e-78 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | pim1 | 572469 | ZDB-GENE-061013-139 | 0.23 | 0.38 | 1.13e-76 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | ywhaz | 336610 | ZDB-GENE-030131-8554 | 0.63 | 0.47 | 9.24e-76 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | cspg5a | 558206 | ZDB-GENE-080425-4 | 0.73 | 0.57 | 5.29e-72 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | ywhag1 | 117604 | ZDB-GENE-011115-1 | 0.44 | 0.29 | 1.86e-66 | |||
42 | 3 | tcf7I2+_barhl2+ neurons | all | dpysl5a | 324416 | ZDB-GENE-030131-3136 | 0.49 | 0.34 | 2.04e-64 |