Marker Genes

Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

  • tissue: Brain
  • ontology: Brain
  • genotype: Danio rerio TL/AB strain
  • stage: 23-25 days post-fertlization (juvenile)
  • treatment condition: WT

Rows:92
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
42 16 tfap2b+_barhl2+ midbrain neurons all tfap2b 550545 ZDB-GENE-050417-394 0.7 0.05 0
42 16 tfap2b+_barhl2+ midbrain neurons all snx29 565513 ZDB-GENE-121105-13 0.48 0.02 0
42 16 tfap2b+_barhl2+ midbrain neurons all tfap2e 393794 ZDB-GENE-040426-1455 0.53 0.02 0
42 16 tfap2b+_barhl2+ midbrain neurons all barhl2 100001699 ZDB-GENE-050913-153 0.6 0.08 0
42 16 tfap2b+_barhl2+ midbrain neurons all pou4f1 58057 ZDB-GENE-000523-2 0.49 0.06 0
42 16 tfap2b+_barhl2+ midbrain neurons all tfap2d 566838 ZDB-GENE-050913-99 0.31 0.02 6.7646297293003E-317
42 16 tfap2b+_barhl2+ midbrain neurons all rab11fip1b 402861 ZDB-GENE-091204-322 0.84 0.54 1.24E-272
42 16 tfap2b+_barhl2+ midbrain neurons all pbx3b 58140 ZDB-GENE-000405-3 0.64 0.31 5.72E-247
42 16 tfap2b+_barhl2+ midbrain neurons all pou4f2 402816 ZDB-GENE-040401-1 0.39 0.08 3.39E-222
42 16 tfap2b+_barhl2+ midbrain neurons all lhx2b 791744 ZDB-GENE-051220-1 0.34 0.09 1.0E-197
42 16 tfap2b+_barhl2+ midbrain neurons all mab21l1 246091 ZDB-GENE-020516-1 0.55 0.2 5.35E-192
42 16 tfap2b+_barhl2+ midbrain neurons all tubb5 386701 ZDB-GENE-031110-4 0.84 0.6 1.09E-183
42 16 tfap2b+_barhl2+ midbrain neurons all etv1 563876 ZDB-GENE-070104-1 0.32 0.14 7.76E-176
42 16 tfap2b+_barhl2+ midbrain neurons all cd99l2 323266 ZDB-GENE-030131-1986 0.87 0.63 2.79E-169
42 16 tfap2b+_barhl2+ midbrain neurons all aldocb 369193 ZDB-GENE-030821-1 0.3 0.58 5.77E-137
42 16 tfap2b+_barhl2+ midbrain neurons all gapdhs 406367 ZDB-GENE-020913-1 0.66 0.82 2.89E-125
42 16 tfap2b+_barhl2+ midbrain neurons all ctnnbip1 58117 ZDB-GENE-000906-3 0.46 0.23 1.99E-124
42 16 tfap2b+_barhl2+ midbrain neurons all aldoaa 336425 ZDB-GENE-030131-8369 0.23 0.51 9.54E-112
42 16 tfap2b+_barhl2+ midbrain neurons all pou3f1 30398 ZDB-GENE-980526-372 0.31 0.1 5.05E-111
42 16 tfap2b+_barhl2+ midbrain neurons all lhx9 550405 ZDB-GENE-050417-210 0.27 0.07 3.54E-109
42 16 tfap2b+_barhl2+ midbrain neurons all junba 407086 ZDB-GENE-040426-2172 0.06 0.28 6.97E-108
42 16 tfap2b+_barhl2+ midbrain neurons all elavl3 30732 ZDB-GENE-980526-76 0.88 0.73 6.6E-107
42 16 tfap2b+_barhl2+ midbrain neurons all qkia 30471 ZDB-GENE-990415-230 0.2 0.45 4.77E-106
42 16 tfap2b+_barhl2+ midbrain neurons all nfil3-5 335737 ZDB-GENE-030131-7677 0.44 0.21 1.2E-102
42 16 tfap2b+_barhl2+ midbrain neurons all stmn2b 100003563 ZDB-GENE-050522-207 0.71 0.48 9.05E-102
42 16 tfap2b+_barhl2+ midbrain neurons all EXPH5 NULL 0.43 0.23 1.64E-100
42 16 tfap2b+_barhl2+ midbrain neurons all FAM72C NULL 0.47 0.24 1.93E-100
42 16 tfap2b+_barhl2+ midbrain neurons all eno1a 334116 ZDB-GENE-030131-6048 0.25 0.51 2.59E-100
42 16 tfap2b+_barhl2+ midbrain neurons all lmo3 553774 ZDB-GENE-050522-201 0.4 0.19 1.19E-99
42 16 tfap2b+_barhl2+ midbrain neurons all ebf3a 567751 ZDB-GENE-070112-292 0.46 0.22 1.12E-98
42 16 tfap2b+_barhl2+ midbrain neurons all nat8l 564754 ZDB-GENE-030729-4 0.62 0.43 5.0E-93
42 16 tfap2b+_barhl2+ midbrain neurons all zic2a 58077 ZDB-GENE-000710-4 0.1 0.31 1.39E-91
42 16 tfap2b+_barhl2+ midbrain neurons all egr4 795099 ZDB-GENE-080204-90 0.19 0.38 8.22E-89
42 16 tfap2b+_barhl2+ midbrain neurons all jun 335916 ZDB-GENE-030131-7859 0.22 0.46 4.22E-87
42 16 tfap2b+_barhl2+ midbrain neurons all ZNF563 NULL 0.09 0.3 9.49E-87
42 16 tfap2b+_barhl2+ midbrain neurons all mcama 566921 ZDB-GENE-090218-29 0.38 0.2 4.59E-86
42 16 tfap2b+_barhl2+ midbrain neurons all mib2 560887 ZDB-GENE-050628-1 0.3 0.13 2.36E-85
42 16 tfap2b+_barhl2+ midbrain neurons all slc6a1b 492490 ZDB-GENE-041114-57 0.11 0.32 1.7E-84
42 16 tfap2b+_barhl2+ midbrain neurons all cnp 325896 ZDB-GENE-030521-29 0.49 0.29 2.05E-83
42 16 tfap2b+_barhl2+ midbrain neurons all pcsk1nl 570305 ZDB-GENE-090427-2 0.2 0.42 1.0E-82
42 16 tfap2b+_barhl2+ midbrain neurons all rbfox1 449554 ZDB-GENE-040927-11 0.53 0.32 6.59E-82
42 16 tfap2b+_barhl2+ midbrain neurons all marcksb 323201 ZDB-GENE-030131-1921 0.87 0.71 6.17E-81
42 16 tfap2b+_barhl2+ midbrain neurons all sat1a.1 565700 ZDB-GENE-050913-41 0.09 0.29 9.58E-81
42 16 tfap2b+_barhl2+ midbrain neurons all chd4a 558344 ZDB-GENE-041111-187 0.41 0.22 1.37E-80
42 16 tfap2b+_barhl2+ midbrain neurons all ccng1 171473 ZDB-GENE-020322-1 0.12 0.32 1.52E-77
42 16 tfap2b+_barhl2+ midbrain neurons all gpia 246094 ZDB-GENE-020513-2 0.15 0.37 1.4E-75
42 16 tfap2b+_barhl2+ midbrain neurons all r3hdm1 110437712 NULL 0.27 0.49 9.66E-75
42 16 tfap2b+_barhl2+ midbrain neurons all gad2 550403 ZDB-GENE-030909-9 0.17 0.33 5.42E-73
42 16 tfap2b+_barhl2+ midbrain neurons all zic5 403041 ZDB-GENE-040622-1 0.03 0.18 1.45E-72
42 16 tfap2b+_barhl2+ midbrain neurons all sv2a 568033 ZDB-GENE-131001-1 0.33 0.53 3.89E-71
42 16 tfap2b+_barhl2+ midbrain neurons all gadd45ba 406304 ZDB-GENE-040426-1971 0.26 0.49 4.0E-71
42 16 tfap2b+_barhl2+ midbrain neurons all ppp1r14c 568055 ZDB-GENE-050706-92 0.39 0.2 6.91E-71
42 16 tfap2b+_barhl2+ midbrain neurons all slc32a1 798575 ZDB-GENE-061201-1 0.04 0.19 1.41E-70
42 16 tfap2b+_barhl2+ midbrain neurons all adcyap1r1a 541315 ZDB-GENE-050315-1 0.18 0.35 8.84E-70
42 16 tfap2b+_barhl2+ midbrain neurons all tubb2b 641421 ZDB-GENE-030131-722 0.73 0.57 1.67E-69
42 16 tfap2b+_barhl2+ midbrain neurons all sf3b6 415157 ZDB-GENE-040625-36 0.03 0.19 5.86E-69
42 16 tfap2b+_barhl2+ midbrain neurons all sox4a 336346 ZDB-GENE-030131-8290 0.62 0.43 5.89E-69
42 16 tfap2b+_barhl2+ midbrain neurons all pkma 335817 ZDB-GENE-031201-4 0.21 0.42 4.91E-68
42 16 tfap2b+_barhl2+ midbrain neurons all atp6v0ca 192336 ZDB-GENE-020419-23 0.52 0.7 9.39E-68
42 16 tfap2b+_barhl2+ midbrain neurons all sypb 436774 ZDB-GENE-040718-205 0.21 0.39 4.13E-67
42 16 tfap2b+_barhl2+ midbrain neurons all arhgdig 394132 ZDB-GENE-040426-1493 0.32 0.15 6.8E-67
42 16 tfap2b+_barhl2+ midbrain neurons all scg2b 777641 ZDB-GENE-061103-160 0.12 0.3 1.7E-66
42 16 tfap2b+_barhl2+ midbrain neurons all zc4h2 323487 ZDB-GENE-030131-2207 0.61 0.4 6.22E-66
42 16 tfap2b+_barhl2+ midbrain neurons all fosab 394198 ZDB-GENE-031222-4 0.48 0.69 2.53E-65
42 16 tfap2b+_barhl2+ midbrain neurons all rundc3b 492775 ZDB-GENE-041114-121 0.28 0.43 3.11E-62
42 16 tfap2b+_barhl2+ midbrain neurons all atp2b4 768304 ZDB-GENE-061027-60 0.22 0.41 3.18E-60
42 16 tfap2b+_barhl2+ midbrain neurons all zbtb18 100003157 ZDB-GENE-050419-73 0.15 0.32 4.47E-58
42 16 tfap2b+_barhl2+ midbrain neurons all atp1b1b 64273 ZDB-GENE-001127-4 0.11 0.26 5.3E-58
42 16 tfap2b+_barhl2+ midbrain neurons all runx1t1 767809 ZDB-GENE-060929-164 0.44 0.26 3.13E-57
42 16 tfap2b+_barhl2+ midbrain neurons all tuba2 406303 ZDB-GENE-040426-1970 0.77 0.61 4.72E-57
42 16 tfap2b+_barhl2+ midbrain neurons all atp6v1b2 359840 ZDB-GENE-030711-4 0.17 0.35 4.84E-55
42 16 tfap2b+_barhl2+ midbrain neurons all pgk1 406696 ZDB-GENE-040426-2711 0.19 0.39 2.06E-54
42 16 tfap2b+_barhl2+ midbrain neurons all si:ch211-113g11.6 559008 ZDB-GENE-060503-473 0.1 0.25 6.91E-54
42 16 tfap2b+_barhl2+ midbrain neurons all rbfox3a 100538330 ZDB-GENE-111213-1 0.35 0.19 3.01E-53
42 16 tfap2b+_barhl2+ midbrain neurons all tob1b 406245 ZDB-GENE-040426-2151 0.25 0.45 1.68E-51
42 16 tfap2b+_barhl2+ midbrain neurons all atp6ap2 406296 ZDB-GENE-040426-1960 0.21 0.39 1.06E-50
42 16 tfap2b+_barhl2+ midbrain neurons all tpi1b 560753 ZDB-GENE-020416-4 0.31 0.49 3.6E-50
42 16 tfap2b+_barhl2+ midbrain neurons all SIAH3 NULL 0.12 0.29 1.24E-49
42 16 tfap2b+_barhl2+ midbrain neurons all si:ch211-288g17.3 567638 ZDB-GENE-030131-461 0.72 0.56 1.23E-47
42 16 tfap2b+_barhl2+ midbrain neurons all eef2l2 336168 ZDB-GENE-030131-8112 0.09 0.25 2.21E-47
42 16 tfap2b+_barhl2+ midbrain neurons all marcksl1a 406407 ZDB-GENE-040426-2146 0.8 0.64 2.35E-46
42 16 tfap2b+_barhl2+ midbrain neurons all map1ab 797545 ZDB-GENE-100426-3 0.26 0.43 6.04E-44
42 16 tfap2b+_barhl2+ midbrain neurons all si:ch211-137a8.4 560240 ZDB-GENE-030131-3742 0.56 0.4 1.28E-43
42 16 tfap2b+_barhl2+ midbrain neurons all tob1a 386629 ZDB-GENE-031030-4 0.18 0.34 1.65E-43
42 16 tfap2b+_barhl2+ midbrain neurons all atp6v1f 436799 ZDB-GENE-040718-259 0.14 0.3 2.09E-42
42 16 tfap2b+_barhl2+ midbrain neurons all tspan7b 449539 ZDB-GENE-040927-5 0.39 0.55 4.13E-42
42 16 tfap2b+_barhl2+ midbrain neurons all rnasekb 336290 ZDB-GENE-060825-160 0.4 0.56 9.45E-42
42 16 tfap2b+_barhl2+ midbrain neurons all nell2b 336082 ZDB-GENE-030131-8026 0.44 0.29 2.54E-39
42 16 tfap2b+_barhl2+ midbrain neurons all scg5 393699 ZDB-GENE-040426-1687 0.18 0.34 4.01E-39
42 16 tfap2b+_barhl2+ midbrain neurons all atp2b3b 558525 ZDB-GENE-080409-2 0.18 0.34 5.19E-39
42 16 tfap2b+_barhl2+ midbrain neurons all uchl1 325119 ZDB-GENE-030131-3844 0.25 0.41 8.75E-39
42 16 tfap2b+_barhl2+ midbrain neurons all olfm1b 445092 ZDB-GENE-040801-228 0.55 0.39 1.54E-36