Marker Genes

Dataset: Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

  • tissue: Brain
  • ontology: Brain
  • genotype: Danio rerio TL/AB strain
  • stage: 23-25 days post-fertlization (juvenile)
  • treatment condition: WT

Rows:163
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
42 6 Granule cell neurons4 all neurod1 30169 ZDB-GENE-990415-172 0.95 0.27 0
42 6 Granule cell neurons4 all pax6b 60639 ZDB-GENE-001031-1 0.62 0.1 0
42 6 Granule cell neurons4 all zic2a 58077 ZDB-GENE-000710-4 0.93 0.28 0
42 6 Granule cell neurons4 all zic5 403041 ZDB-GENE-040622-1 0.71 0.16 0
42 6 Granule cell neurons4 all oprd1b 336529 ZDB-GENE-030131-8473 0.41 0.03 0
42 6 Granule cell neurons4 all ccng1 171473 ZDB-GENE-020322-1 0.73 0.3 0
42 6 Granule cell neurons4 all zbtb18 100003157 ZDB-GENE-050419-73 0.76 0.3 0
42 6 Granule cell neurons4 all zic4 767673 ZDB-GENE-040622-4 0.52 0.12 0
42 6 Granule cell neurons4 all pax6a 30567 ZDB-GENE-990415-200 0.39 0.05 0
42 6 Granule cell neurons4 all zic1 30096 ZDB-GENE-000208-4 0.6 0.17 0
42 6 Granule cell neurons4 all neurod2 114435 ZDB-GENE-010608-3 0.36 0.05 0
42 6 Granule cell neurons4 all crip2 554826 ZDB-GENE-040426-2889 0.28 0.06 0
42 6 Granule cell neurons4 all en1b 541371 ZDB-GENE-980526-6 0.29 0.06 3.54521344636672e-315
42 6 Granule cell neurons4 all chd7 569471 ZDB-GENE-070912-179 0.38 0.16 1.13e-300
42 6 Granule cell neurons4 all bcam 767689 ZDB-GENE-060929-620 0.35 0.1 7.48e-279
42 6 Granule cell neurons4 all dclk2a 572548 ZDB-GENE-050420-170 0.37 0.15 1.94e-271
42 6 Granule cell neurons4 all insm1a 402941 ZDB-GENE-040426-1810 0.41 0.13 4.67e-261
42 6 Granule cell neurons4 all si:ch73-1a9.3 556254 ZDB-GENE-141216-84 0.89 0.73 2.08e-246
42 6 Granule cell neurons4 all mapk11 415185 ZDB-GENE-040625-75 0.31 0.1 3.44e-243
42 6 Granule cell neurons4 all gse1 567033 ZDB-GENE-030131-9569 0.39 0.19 2.09e-223
42 6 Granule cell neurons4 all tubb5 386701 ZDB-GENE-031110-4 0.84 0.6 4.1e-208
42 6 Granule cell neurons4 all klf11b 559076 ZDB-GENE-061103-82 0.32 0.12 1.84e-202
42 6 Granule cell neurons4 all ppp1r14bb 100000577 ZDB-GENE-030616-595 0.26 0.09 1.29e-196
42 6 Granule cell neurons4 all aldocb 369193 ZDB-GENE-030821-1 0.32 0.58 3.06e-195
42 6 Granule cell neurons4 all bhlhe22 393930 ZDB-GENE-040426-1411 0.29 0.09 1.15e-184
42 6 Granule cell neurons4 all tshz3a 558522 ZDB-GENE-100322-1 0.22 0.05 1.75e-183
42 6 Granule cell neurons4 all draxin 619245 ZDB-GENE-050913-20 0.37 0.18 8.94e-182
42 6 Granule cell neurons4 all uncx4.1 553947 ZDB-GENE-050714-1 0.22 0.04 1.22e-176
42 6 Granule cell neurons4 all si:ch211-132d3.4 323155 ZDB-LINCRNAG-141216-148 0.55 0.3 3.93e-176
42 6 Granule cell neurons4 all cspg5a 558206 ZDB-GENE-080425-4 0.28 0.58 4.48e-175
42 6 Granule cell neurons4 all cxxc5a 557911 ZDB-GENE-030131-3178 0.4 0.21 7.68e-173
42 6 Granule cell neurons4 all prdm8b 557162 ZDB-GENE-060526-174 0.27 0.1 5.28e-169
42 6 Granule cell neurons4 all ndrg3b 327395 ZDB-GENE-030131-5606 0.49 0.32 4.89e-161
42 6 Granule cell neurons4 all neo1a 266983 ZDB-GENE-021031-1 0.31 0.15 2.53e-159
42 6 Granule cell neurons4 all pkma 335817 ZDB-GENE-031201-4 0.16 0.43 6.4e-157
42 6 Granule cell neurons4 all etv1 563876 ZDB-GENE-070104-1 0.34 0.14 1.9e-156
42 6 Granule cell neurons4 all calr3a 30248 ZDB-GENE-000208-17 0.53 0.37 5.34e-153
42 6 Granule cell neurons4 all tenm3 30155 ZDB-GENE-990714-19 0.07 0.29 1.06e-152
42 6 Granule cell neurons4 all nell2b 336082 ZDB-GENE-030131-8026 0.07 0.3 9.76e-152
42 6 Granule cell neurons4 all plxna1a 795761 ZDB-GENE-140106-137 0.05 0.27 9.93e-146
42 6 Granule cell neurons4 all pbx3b 58140 ZDB-GENE-000405-3 0.1 0.32 1.35e-144
42 6 Granule cell neurons4 all ndrg4 692305 ZDB-GENE-060512-226 0.38 0.61 2.3e-143
42 6 Granule cell neurons4 all aplp2 796801 ZDB-GENE-061009-28 0.1 0.34 1.03e-142
42 6 Granule cell neurons4 all atp1b1b 64273 ZDB-GENE-001127-4 0.06 0.27 9.5e-142
42 6 Granule cell neurons4 all slc6a1a 692318 ZDB-GENE-060519-23 0.02 0.21 3.47e-141
42 6 Granule cell neurons4 all pcp4l1 100008021 ZDB-GENE-040724-35 0.05 0.27 5.45e-140
42 6 Granule cell neurons4 all eef1a1a 336334 ZDB-GENE-030131-8278 0.19 0.45 8.64e-140
42 6 Granule cell neurons4 all gad2 550403 ZDB-GENE-030909-9 0.12 0.33 1.31e-137
42 6 Granule cell neurons4 all nfia 556665 ZDB-GENE-050208-501 0.36 0.18 1.64e-137
42 6 Granule cell neurons4 all adcyap1r1a 541315 ZDB-GENE-050315-1 0.13 0.36 4.15e-135
42 6 Granule cell neurons4 all fscn1b 570314 ZDB-GENE-120507-1 0.06 0.27 2.99e-133
42 6 Granule cell neurons4 all eno1a 334116 ZDB-GENE-030131-6048 0.26 0.51 3.32e-132
42 6 Granule cell neurons4 all slc6a1b 492490 ZDB-GENE-041114-57 0.12 0.32 4.71e-130
42 6 Granule cell neurons4 all snap25a 30712 ZDB-GENE-980526-468 0.46 0.64 7.74e-129
42 6 Granule cell neurons4 all ndrg3a 30286 ZDB-GENE-980526-124 0.2 0.44 2.74e-128
42 6 Granule cell neurons4 all appb 170846 ZDB-GENE-020220-1 0.23 0.49 1.37e-127
42 6 Granule cell neurons4 all ctnnb1 30265 ZDB-GENE-980526-362 0.32 0.56 2.64e-127
42 6 Granule cell neurons4 all cadm4 492787 ZDB-GENE-041114-138 0.05 0.25 2.08e-126
42 6 Granule cell neurons4 all hmgb1a 321622 ZDB-GENE-030131-341 0.43 0.68 4.12e-125
42 6 Granule cell neurons4 all glula 100000775 ZDB-GENE-030131-688 0.12 0.3 4.68e-125
42 6 Granule cell neurons4 all dusp5 114436 ZDB-GENE-010625-1 0.31 0.13 1.7e-123
42 6 Granule cell neurons4 all camk4 550270 ZDB-GENE-050417-76 0.3 0.15 3.41e-123
42 6 Granule cell neurons4 all npas4a 724016 ZDB-GENE-060616-396 0.26 0.5 5.64e-123
42 6 Granule cell neurons4 all fscn1a 558271 ZDB-GENE-031009-1 0.08 0.29 6.49e-123
42 6 Granule cell neurons4 all zfhx3 100333211 ZDB-GENE-030131-7577 0.07 0.26 6.01e-122
42 6 Granule cell neurons4 all map1ab 797545 ZDB-GENE-100426-3 0.21 0.44 7.77e-120
42 6 Granule cell neurons4 all islr2 541396 ZDB-GENE-050320-95 0.1 0.32 2.46e-118
42 6 Granule cell neurons4 all pygmb 393444 ZDB-GENE-040426-1206 0.08 0.28 4.55e-118
42 6 Granule cell neurons4 all ptprn2 325033 ZDB-GENE-030131-3758 0.06 0.26 9.65e-118
42 6 Granule cell neurons4 all mcama 566921 ZDB-GENE-090218-29 0.39 0.19 4.79e-117
42 6 Granule cell neurons4 all tmsb2 566329 ZDB-GENE-070126-5 0.29 0.52 4.21e-116
42 6 Granule cell neurons4 all si:ch211-113g11.6 559008 ZDB-GENE-060503-473 0.06 0.25 6.22e-116
42 6 Granule cell neurons4 all eef2l2 336168 ZDB-GENE-030131-8112 0.06 0.25 1.14e-115
42 6 Granule cell neurons4 all slc32a1 798575 ZDB-GENE-061201-1 0.03 0.19 2.79e-115
42 6 Granule cell neurons4 all adcyap1b 335625 ZDB-GENE-041010-89 0.05 0.22 3.97e-115
42 6 Granule cell neurons4 all rab6ba 558900 ZDB-GENE-050809-136 0.08 0.28 1.12e-113
42 6 Granule cell neurons4 all olfm1b 445092 ZDB-GENE-040801-228 0.17 0.41 2.9e-113
42 6 Granule cell neurons4 all sez6l2 557847 ZDB-GENE-091204-189 0.21 0.44 1.91e-112
42 6 Granule cell neurons4 all atp2b3b 558525 ZDB-GENE-080409-2 0.12 0.34 7.32e-112
42 6 Granule cell neurons4 all si:ch73-119p20.1 100334146 ZDB-GENE-141216-395 0.08 0.29 9.13e-112
42 6 Granule cell neurons4 all syt11a 406769 ZDB-GENE-040426-2815 0.27 0.51 2.19e-111
42 6 Granule cell neurons4 all aldoaa 336425 ZDB-GENE-030131-8369 0.27 0.51 6.08e-111
42 6 Granule cell neurons4 all map4l 100537884 ZDB-GENE-070912-581 0.17 0.4 2.61e-109
42 6 Granule cell neurons4 all nebl 541446 ZDB-GENE-050320-151 0.24 0.08 1.2e-108
42 6 Granule cell neurons4 all gadd45ba 406304 ZDB-GENE-040426-1971 0.26 0.49 4.18e-108
42 6 Granule cell neurons4 all zfhx4 556453 ZDB-GENE-070530-3 0.06 0.23 4.53e-108
42 6 Granule cell neurons4 all cbx7a 550551 ZDB-GENE-050417-400 0.18 0.41 9.45e-108
42 6 Granule cell neurons4 all si:dkey-35i13.1 795516 ZDB-GENE-030131-8008 0.03 0.19 3.08e-107
42 6 Granule cell neurons4 all gpia 246094 ZDB-GENE-020513-2 0.15 0.37 1.73e-106
42 6 Granule cell neurons4 all robo2 60309 ZDB-GENE-001019-1 0.05 0.23 5.8e-106
42 6 Granule cell neurons4 all pabpc1b 393856 ZDB-GENE-050308-1 0.13 0.34 1.82e-105
42 6 Granule cell neurons4 all map1aa 100151220 ZDB-GENE-100426-2 0.22 0.45 8.13e-105
42 6 Granule cell neurons4 all slc38a3a 100073328 ZDB-GENE-070615-25 0.1 0.28 1.61e-104
42 6 Granule cell neurons4 all si:ch211-235e9.8 100002196 ZDB-GENE-141219-2 0.16 0.37 1.07e-101
42 6 Granule cell neurons4 all jdp2b 436766 ZDB-GENE-040718-197 0.03 0.18 1.44e-101
42 6 Granule cell neurons4 all serinc1 325690 ZDB-GENE-030131-4415 0.63 0.81 3.94e-101
42 6 Granule cell neurons4 all tox 569666 ZDB-GENE-070912-181 0.04 0.2 5.34e-101
42 6 Granule cell neurons4 all scg2b 777641 ZDB-GENE-061103-160 0.12 0.31 2.46e-100
42 6 Granule cell neurons4 all dnajb5 569466 ZDB-GENE-070705-308 0.14 0.31 2.19e-99
42 6 Granule cell neurons4 all scn2b 777666 ZDB-GENE-070920-1 0.06 0.23 1.57e-95
42 6 Granule cell neurons4 all dynll2a 373083 ZDB-GENE-030828-11 0.04 0.2 7.9e-95
42 6 Granule cell neurons4 all si:dkeyp-72g9.4 793842 ZDB-GENE-031204-23 0.08 0.27 9.11e-95
42 6 Granule cell neurons4 all dynll2b 572690 ZDB-GENE-050320-132 0.11 0.29 9.98e-94
42 6 Granule cell neurons4 all abcc5 336147 ZDB-GENE-050517-17 0.14 0.33 1.65e-93
42 6 Granule cell neurons4 all fam49a 378872 ZDB-GENE-031002-50 0.13 0.32 1.99e-93
42 6 Granule cell neurons4 all nrp1a 353246 ZDB-GENE-030519-2 0.06 0.21 8.62e-93
42 6 Granule cell neurons4 all ptprna 324790 ZDB-GENE-030131-3511 0.05 0.21 1.55e-92
42 6 Granule cell neurons4 all necab2 565258 ZDB-GENE-050706-167 0.07 0.23 1.81e-91
42 6 Granule cell neurons4 all oaz2b 790945 ZDB-GENE-070313-1 0.04 0.2 3.91e-91
42 6 Granule cell neurons4 all tmem178b 436669 ZDB-GENE-040718-92 0.11 0.29 1.76e-90
42 6 Granule cell neurons4 all ndufa4 406298 ZDB-GENE-040426-1962 0.14 0.33 6.86e-90
42 6 Granule cell neurons4 all ldb2b 30578 ZDB-GENE-990415-137 0.07 0.24 1.22e-89
42 6 Granule cell neurons4 all ttyh3b 798421 ZDB-GENE-051120-105 0.15 0.34 4.37e-89
42 6 Granule cell neurons4 all zic3 368263 ZDB-GENE-030708-2 0.42 0.25 6.23e-89
42 6 Granule cell neurons4 all ppp1r14c 568055 ZDB-GENE-050706-92 0.06 0.21 1.95e-88
42 6 Granule cell neurons4 all spock3 562002 ZDB-GENE-090311-24 0.05 0.2 1.9e-86
42 6 Granule cell neurons4 all atp1b3b 64272 ZDB-GENE-001127-1 0.24 0.44 4.57e-86
42 6 Granule cell neurons4 all arl6ip1 394087 ZDB-GENE-040426-1087 0.25 0.45 1.73e-84
42 6 Granule cell neurons4 all camta1b 497465 ZDB-GENE-080229-1 0.15 0.34 2.08e-84
42 6 Granule cell neurons4 all si:dkey-33c12.3 335380 ZDB-GENE-030131-7320 0.12 0.29 1.65e-83
42 6 Granule cell neurons4 all mdkb 65231 ZDB-GENE-010131-6 0.43 0.62 5.67e-83
42 6 Granule cell neurons4 all VSTM2B NULL 0.07 0.23 3.48e-82
42 6 Granule cell neurons4 all nsfa 368483 ZDB-GENE-030616-37 0.21 0.41 1.42e-81
42 6 Granule cell neurons4 all atp6v1b2 359840 ZDB-GENE-030711-4 0.17 0.36 3.55e-81
42 6 Granule cell neurons4 all cpe 407979 ZDB-GENE-090313-68 0.47 0.63 1.44e-80
42 6 Granule cell neurons4 all syngr3b 570094 ZDB-GENE-070822-6 0.09 0.25 2.81e-80
42 6 Granule cell neurons4 all pgk1 406696 ZDB-GENE-040426-2711 0.2 0.39 2.97e-80
42 6 Granule cell neurons4 all si:dkey-177p2.6 568712 ZDB-GENE-030131-5926 0.22 0.42 4.16e-80
42 6 Granule cell neurons4 all aplp1 404233 ZDB-GENE-040319-1 0.3 0.51 9.08e-79
42 6 Granule cell neurons4 all znf536 565481 ZDB-GENE-030616-624 0.38 0.23 1.69e-78
42 6 Granule cell neurons4 all caskin1 563678 ZDB-GENE-071115-3 0.12 0.28 8.73e-77
42 6 Granule cell neurons4 all grin1a 767745 ZDB-GENE-051202-1 0.12 0.29 2.15e-76
42 6 Granule cell neurons4 all dctn1b 100003026 ZDB-GENE-050419-28 0.18 0.36 2.57e-76
42 6 Granule cell neurons4 all maptb 567833 ZDB-GENE-081027-2 0.51 0.69 1.65e-75
42 6 Granule cell neurons4 all calm1b 368217 ZDB-GENE-030804-2 0.25 0.44 6.15e-75
42 6 Granule cell neurons4 all dpysl5a 324416 ZDB-GENE-030131-3136 0.18 0.35 2.6e-74
42 6 Granule cell neurons4 all itm2ba 323632 ZDB-GENE-030131-2352 0.21 0.38 3.54e-74
42 6 Granule cell neurons4 all psap 140811 ZDB-GENE-020108-1 0.18 0.34 1.75e-73
42 6 Granule cell neurons4 all slc24a6a 561209 ZDB-GENE-100922-39 0.08 0.23 7.18e-73
42 6 Granule cell neurons4 all eno2 402874 ZDB-GENE-040704-27 0.19 0.37 1.12e-72
42 6 Granule cell neurons4 all ckmt1 321892 ZDB-GENE-030131-611 0.17 0.34 1.16e-71
42 6 Granule cell neurons4 all pbx1a 58138 ZDB-GENE-000405-1 0.11 0.26 2.08e-70
42 6 Granule cell neurons4 all calm3a 327379 ZDB-GENE-030131-5590 0.63 0.79 4.3e-69
42 6 Granule cell neurons4 all si:ch73-21k16.6 ZDB-LINCRNAG-130603-35 0.16 0.33 1.29e-67
42 6 Granule cell neurons4 all atp6v0d1 322811 ZDB-GENE-030131-1531 0.16 0.32 3.75e-67
42 6 Granule cell neurons4 all camk2g1 791855 ZDB-GENE-050913-146 0.15 0.31 1.48e-65
42 6 Granule cell neurons4 all r3hdm1 110437712 NULL 0.64 0.48 1.71e-65
42 6 Granule cell neurons4 all pde4ba 565706 ZDB-GENE-030131-9570 0.17 0.33 8.83e-65
42 6 Granule cell neurons4 all stmn2b 100003563 ZDB-GENE-050522-207 0.31 0.49 6.26e-64
42 6 Granule cell neurons4 all nat8l 564754 ZDB-GENE-030729-4 0.27 0.44 4.16e-63
42 6 Granule cell neurons4 all cacna2d2a 541376 ZDB-GENE-050320-71 0.18 0.34 6.21e-63
42 6 Granule cell neurons4 all clstn3 555627 ZDB-GENE-100921-73 0.35 0.52 1.12e-60
42 6 Granule cell neurons4 all camk2b1 562064 ZDB-GENE-030131-9588 0.18 0.35 1.99e-60
42 6 Granule cell neurons4 all rnasekb 336290 ZDB-GENE-060825-160 0.39 0.56 1.51e-58
42 6 Granule cell neurons4 all cd81a 58031 ZDB-GENE-000831-5 0.38 0.53 2.67e-58
42 6 Granule cell neurons4 all pclob 565842 ZDB-GENE-030131-8100 0.19 0.34 2.88e-58
42 6 Granule cell neurons4 all atp6v1e1b 192335 ZDB-GENE-020419-11 0.24 0.4 9.02e-58
42 6 Granule cell neurons4 all sv2a 568033 ZDB-GENE-131001-1 0.38 0.53 2.52e-56
42 6 Granule cell neurons4 all atp6ap1a 100004566 ZDB-GENE-090312-136 0.19 0.35 4.47e-56
42 6 Granule cell neurons4 all fabp3 171478 ZDB-GENE-020318-2 0.51 0.66 1e-55
42 6 Granule cell neurons4 all tmem59l 406646 ZDB-GENE-040426-2651 0.31 0.47 3.29e-52
42 6 Granule cell neurons4 all mllt11 563531 ZDB-GENE-030131-3007 0.4 0.56 2.12e-47
42 6 Granule cell neurons4 all vamp2 336281 ZDB-GENE-030131-8225 0.36 0.51 2.6e-44