Marker Genes
Dataset: Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
- tissue: Brain
- ontology: Brain
- genotype: C57BL/6 x DBA/2
- stage:
- treatment condition: WT
- cell/nucleus: Nuclei
- pmid: 29545511
- subset name: all
- total genes: Not reported
- clustering: Jaccard-Louvain
- pseudotime: t-SNE
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110823
Rows:50
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Tshz2 | 228911 | 2153084 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Ntf3 | 18205 | 97380 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Gm26883 | NULL | |||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Rxfp1 | 381489 | 2682211 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Satb2 | 212712 | 2679336 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Ccbe1 | 320924 | 2445053 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Itpr1 | 16438 | 96623 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Tshz3 | 243931 | 2442819 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | RP23-230F2.8 | NULL | |||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Ntng2 | 171171 | 2159341 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Clstn2 | 64085 | 1929897 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Ldb2 | 16826 | 894670 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Dok5 | 76829 | 1924079 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Egfem1 | 75740 | 1922990 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Mlip | 69642 | 1916892 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Tenm2 | 23964 | 1345184 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Fbn2 | 14119 | 95490 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Nrp1 | 18186 | 106206 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Msra | 110265 | 106916 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Bcl11a | 14025 | 106190 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Mical2 | 320878 | 2444947 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | 5730522E02Rik | 70626 | 1917876 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Zbtb16 | 235320 | 103222 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Trpc5 | 22067 | 109524 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Trpc4 | 22066 | 109525 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Tiam2 | 24001 | 1344338 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Dpy19l1 | 244745 | 1915685 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Sobp | 109205 | 1924427 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Thsd7b | 210417 | 2443925 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Acvr2a | 11480 | 102806 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | St8sia2 | 20450 | 106020 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Tenm3 | 23965 | 1345183 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Mpped1 | 223726 | 106316 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Runx1t1 | 12395 | 104793 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Dab1 | 13131 | 108554 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Khdrbs2 | 170771 | 2159649 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Epha3 | 13837 | 99612 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Cntn5 | 244682 | 3042287 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Nwd2 | 319807 | 1920464 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Kcnab1 | 16497 | 109155 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Prkd1 | 18760 | 99879 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Mgat4c | 67569 | 1914819 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Gm26871 | 102634933 | 5477365 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Pam | 18484 | 97475 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Gabra2 | 14395 | 95614 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Mef2c | 17260 | 99458 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Arpp21 | 74100 | 107562 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Tox | 252838 | 2181659 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | St6galnac5 | 26938 | 1349471 | ||||||
| 69 | 6 | Cortex Layer 2/Layer3/Layer 4 Pyramidal-Ntf3 | all | Fam49a | 76820 | 1261783 |