Marker Genes
Dataset: Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
- tissue: Brain
- ontology: Brain
- genotype: C57BL/6 x DBA/2
- stage:
- treatment condition: WT
- cell/nucleus: Nuclei
- pmid: 29545511
- subset name: all
- total genes: Not reported
- clustering: Jaccard-Louvain
- pseudotime: t-SNE
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110823
Rows:50
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Pappa2 | 23850 | 3051647 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Cntnap3 | 238680 | 3588199 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Rspo2 | 239405 | 1922667 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Satb1 | 20230 | 105084 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Ntf3 | 18205 | 97380 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Il1rapl2 | 60367 | 1913106 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Ntng2 | 171171 | 2159341 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Cpne6 | 12891 | 1334445 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Fam163a | 329274 | 3618859 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Fstl4 | 320027 | 2443199 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | 6530403H02Rik | 320739 | 2444638 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Lef1 | 16842 | 96770 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Hmcn1 | 545370 | 2685047 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Foxo6 | 329934 | 2676586 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | St6galnac5 | 26938 | 1349471 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Epha3 | 13837 | 99612 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Tafa2 | 268354 | 2143691 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Ntsr1 | 18216 | 97386 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | L3mbtl4 | 320858 | 2444889 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Oxr1 | 170719 | 2179326 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Carmil3 | 268747 | 2448573 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Pex5l | 58869 | 1916672 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Rasal1 | 19415 | 1330842 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Dgkg | 110197 | 105060 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Lhx2 | 16870 | 96785 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Sv2b | 64176 | 1927338 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Syt17 | 110058 | 104966 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Vwc2l | 320460 | 2444069 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Hs6st3 | 50787 | 1354960 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Dcc | 13176 | 94869 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Zbtb16 | 235320 | 103222 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Chst8 | 68947 | 1916197 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Slit3 | 20564 | 1315202 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Nr4a3 | 18124 | 1352457 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Trpc4 | 22066 | 109525 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Cacna2d3 | 12294 | 1338890 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Ero1lb | 67475 | 1914725 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Crim1 | 50766 | 1354756 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Epha6 | 13840 | 108034 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Unc13c | 208898 | 2149021 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Ttc39c | 72747 | 1919997 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Met | 17295 | 96969 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Nwd2 | 319807 | 1920464 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | 5730522E02Rik | 70626 | 1917876 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Socs2 | 216233 | 1201787 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Ccdc171 | 320226 | 1922152 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Sipa1l1 | 217692 | 2443679 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Prlr | 19116 | 97763 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Asic2 | 11418 | 1100867 | ||||||
| 69 | 5 | Cortex Layer2/Layer 3 Pyramidal - Satb1 | all | Il1rap | 16180 | 104975 |