The program accepts comma or tab separated text files or Excel files.
Example si/shRNA File 1 |
This file should have at least three columns; first column with siRNA identifiers that can be any number given by the user, second column with si/shRNA sequences and third column with phenotype/activity data. |
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Example si/shRNA File 2 |
This file should have at least two columns; first column with si/shRNA identifiers that can be any number given by the user and second column with si/shRNA sequences. |
All transcript sequences must be in FASTA format in this file.
Custom Database File Example |
If the user wants to provide a custom database file, it should contain FASTA formatted sequences. The information written on the comment line (after ">") will be used as sequence identifier. |
Example Gess Results File 1 |
This file contains basic GESS analysis output. Analysis results for each tested sequence is listed in a tab delimited format. See the help page for more information. |
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Example Gess Results File 2 |
This file lists tested sequences with matching "active" si/shRNAs to them. Note that only significant transcripts (p value cut-off 0.05) are listed here and they are NOT sorted. |