DRSC/TRiP Functional Genomics Resources

UP-TORR - Updated Targets of RNAi Reagents

Fly

Input Options:
RNAi Reagent Sequences
PCR Primer Sequences(for long dsRNAs)
Select PCR template
Genomic DNA
cDNA
RNAi Reagent Identifiers
Gene
Gene Identifier
BLAST Sequence
Cell-based RNAi Reagents:
DRSC dsRNAs
DKFZ dsRNAs
In-vivo RNAi Reagents:
TRiP Long Hairpins
TRiP Short Hairpins
NIG
VDRC KK
VDRC GD

Enter Information (help):

Or upload information from file:

On-target search parameters(Short Hairpin):
Perfect match to RNAi sequence
Allow mismatches

Off-target search options:
Check off-target genes for matches greater than or equal to
Check CAR/CAN repeat

FlyBase
Release:6.38
Updated:3/25/21 11:57 AM







For citations, please use:

Hu Y, Roesel C, Flockhart I, Perkins L, Perrimon N, Mohr S. UP-TORR: Online Tool for Accurate and Up-to-Date Annotation of RNAi Reagents. Genetics. 2013 Sep;195(1):37-45. doi: 10.1534/genetics.113.151340. Epub 2013 Jun 21. PubMed Entry