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Gene:
  • smo
  • 30225
  • ZDB-GENE-980526-89

Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq

datasets(53) Tissue Type: - PubMed Id: 29576475 - Treatment Condition : WT Species : Zebrafish

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

datasets(42) Tissue Type: - PubMed Id: 29608178 - Treatment Condition : WT Species : Zebrafish

Single-Cell Transcriptomics Analyses of Neural Stem Cell Heterogeneity and Contextual Plasticity in a Zebrafish Brain Model of Amyloid Toxicity

datasets(33,34,32,35) Tissue Type: - PubMed Id: 31018142 - Treatment Condition : IL-4 treated Species : Zebrafish

Single Cell Gene Data Details


Rows:58
id pubmed_id tissue type condition dataset ID dataset id cluster name cluster description Species specific geneid avg exp % exp gene symbol
id 29576475 Habenula all 53 Markers Hb13 ZDB-GENE-980526-89 0.0727379 2.52525 SMO
id 29576475 Habenula all 53 Markers Hb01 ZDB-GENE-980526-89 0.00349523 0.0915751 SMO
id 29608178 Brain all 42 Markers Nascent forebrain neurons ZDB-GENE-980526-89 0.132598 2.99906 smo
id 29608178 Brain all 42 Markers bnc2+, onecut1+ neurons ZDB-GENE-980526-89 0.088127 2.57467 smo
id 29608178 Brain all 42 Markers GABAergic optic tectum neurons ZDB-GENE-980526-89 0.125364 3.07671 smo
id 29608178 Brain all 42 Markers atf5b+ neurons ZDB-GENE-980526-89 0.146012 3.66089 smo
id 29608178 Brain all 42 Markers GABAergic subpallium neurons ZDB-GENE-980526-89 0.129031 3.08725 smo
id 29608178 Brain all 42 Markers Progenitor cells ZDB-GENE-980526-89 0.868717 22.2546 smo
id 29608178 Brain all 42 Markers Ventral forebrain neurons ZDB-GENE-980526-89 0.106014 4.33018 smo
id 29608178 Brain all 42 Markers Unclassified neurons ZDB-GENE-980526-89 0.197641 5.60867 smo
id 29608178 Brain all 42 Markers sst3+ neurons ZDB-GENE-980526-89 0.0993619 2.42511 smo
id 29608178 Brain all 42 Markers phox2+ hindbrain neurons ZDB-GENE-980526-89 0.113055 3.68189 smo
id 29608178 Brain all 42 Markers penkb+ neurons ZDB-GENE-980526-89 0.107745 4.16667 smo
id 29608178 Brain all 42 Markers Granule cell neurons ZDB-GENE-980526-89 0.132864 2.77379 smo
id 29608178 Brain all 42 Markers rtn4rl2b+ eomesa+ pallium neurons ZDB-GENE-980526-89 0.0983281 4.54545 smo
id 29608178 Brain all 42 Markers nefma+ glutamergic neurons (midbrain) ZDB-GENE-980526-89 0.126155 4.62842 smo
id 29608178 Brain all 42 Markers tfap2b+, barhl2+ midbrain neurons ZDB-GENE-980526-89 0.12741 3.12283 smo
id 29608178 Brain all 42 Markers Torus Longitudinalis neurons ZDB-GENE-980526-89 0.0994035 3.25 smo
id 29608178 Brain all 42 Markers fezf1+, otpa+ neurons ZDB-GENE-980526-89 0.123901 4.67213 smo
id 29608178 Brain all 42 Markers GABAergic hindbrain neurons ZDB-GENE-980526-89 0.106355 3.41151 smo
id 29608178 Brain all 42 Markers Radial glia cells (progenitors) ZDB-GENE-980526-89 1.31598 25.335 smo
id 29608178 Brain all 42 Markers hmx3a+, hmx2+ neurons ZDB-GENE-980526-89 0.144858 3.90738 smo
id 29608178 Brain all 42 Markers tcf7I2+, barhl2+ neurons ZDB-GENE-980526-89 0.111631 3.49218 smo
id 31018142 Brain AB42 33 Markers PC_2 ZDB-GENE-980526-89 0.215542 10.5263 smo
id 31018142 Brain IL4 34 Markers PC_0 ZDB-GENE-980526-89 0.435681 13.6364 smo
id 31018142 Brain merged 32 Markers PC_5 ZDB-GENE-980526-89 0.476047 29.0323 smo
id 31018142 Brain AB42 33 Markers PC_0 ZDB-GENE-980526-89 0.280193 13.253 smo
id 31018142 Brain merged 32 Markers PC_3 ZDB-GENE-980526-89 0.65595 21.7391 smo
id 31018142 Brain AB42 33 Markers PC_6 ZDB-GENE-980526-89 0.218891 13.8889 smo
id 31018142 Brain merged 32 Markers PC_1 ZDB-GENE-980526-89 0.256035 11.6564 smo
id 31018142 Brain AB42 33 Markers PC_4 ZDB-GENE-980526-89 0.596112 14.7059 smo
id 31018142 Brain merged 32 Markers PC_8 ZDB-GENE-980526-89 0.47188 19.0476 smo
id 31018142 Brain IL4 34 Markers PC_2 ZDB-GENE-980526-89 0.391015 20 smo
id 31018142 Brain merged 32 Markers PC_7 ZDB-GENE-980526-89 0.263711 12 smo
id 31018142 Brain IL4 34 Markers PC_1 ZDB-GENE-980526-89 0.240461 10 smo
id 31018142 Brain IL4 34 Markers PC_8 ZDB-GENE-980526-89 0.590687 20 smo
id 31018142 Brain PBS 35 Markers OPC_OD_1 ZDB-GENE-980526-89 0.45045 6.66667 smo
id 31018142 Brain PBS 35 Markers PC_0 ZDB-GENE-980526-89 0.46244 20.2381 smo
id 31018142 Brain PBS 35 Markers PC_8 ZDB-GENE-980526-89 1.00065 50 smo
id 31018142 Brain PBS 35 Markers PC_4 ZDB-GENE-980526-89 0.765128 12.1212 smo
id 31018142 Brain merged 32 Markers PC_2 ZDB-GENE-980526-89 0.363113 18.4713 smo
id 31018142 Brain AB42 33 Markers PC_5 ZDB-GENE-980526-89 0.489531 35.2941 smo
id 31018142 Brain merged 32 Markers PC_0 ZDB-GENE-980526-89 0.385171 16.1137 smo
id 31018142 Brain AB42 33 Markers PC_3 ZDB-GENE-980526-89 0.68052 19.5122 smo
id 31018142 Brain merged 32 Markers PC_6 ZDB-GENE-980526-89 0.164169 10.4167 smo
id 31018142 Brain AB42 33 Markers PC_1 ZDB-GENE-980526-89 0.183778 8.33333 smo
id 31018142 Brain merged 32 Markers OPC_OD_1 ZDB-GENE-980526-89 0.17325 2.5641 smo
id 31018142 Brain AB42 33 Markers PC_7 ZDB-GENE-980526-89 1.0988 50 smo
id 31018142 Brain merged 32 Markers PC_4 ZDB-GENE-980526-89 0.562798 12.2222 smo
id 31018142 Brain IL4 34 Markers PC_4 ZDB-GENE-980526-89 0.223251 8.69565 smo
id 31018142 Brain merged 32 Markers NN_7 ZDB-GENE-980526-89 0.513163 7.69231 smo
id 31018142 Brain IL4 34 Markers PC_3 ZDB-GENE-980526-89 0.587979 17.3913 smo
id 31018142 Brain IL4 34 Markers PC_5 ZDB-GENE-980526-89 0.466403 27.2727 smo
id 31018142 Brain PBS 35 Markers PC_1 ZDB-GENE-980526-89 0.401918 19.5122 smo
id 31018142 Brain PBS 35 Markers PC_3 ZDB-GENE-980526-89 0.697504 27.451 smo
id 31018142 Brain PBS 35 Markers PC_2 ZDB-GENE-980526-89 0.426755 21.875 smo
id 31018142 Brain PBS 35 Markers PC_5 ZDB-GENE-980526-89 0.475307 26.087 smo
id 31018142 Brain PBS 35 Markers NN_7 ZDB-GENE-980526-89 0.833889 12.5 smo