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Gene:
  • msi2b
  • 394084
  • ZDB-GENE-040426-1268

Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq

datasets(53) Tissue Type: - PubMed Id: 29576475 - Treatment Condition : WT Species :Zebrafish

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

datasets(42) Tissue Type: - PubMed Id: 29608178 - Treatment Condition : WT Species :Zebrafish

Single-Cell Transcriptomics Analyses of Neural Stem Cell Heterogeneity and Contextual Plasticity in a Zebrafish Brain Model of Amyloid Toxicity

datasets(34,33,35,32) Tissue Type: - PubMed Id: 31018142 - Treatment Condition : IL-4 treated Species :Zebrafish


Single Cell Gene Data Details


Rows:129
id pubmed_id tissue type condition dataset ID dataset id cluster name cluster description Species specific geneid avg exp % exp gene symbol
id 29576475 Habenula all 53 Markers Hb09 ZDB-GENE-040426-1268 11.1159 94.1748 MSI2B
id 29576475 Habenula all 53 Markers Hb01 ZDB-GENE-040426-1268 15.4244 90.293 MSI2B
id 29576475 Habenula all 53 Markers Hb11 ZDB-GENE-040426-1268 26.9789 98.3051 MSI2B
id 29576475 Habenula all 53 Markers Hb02 ZDB-GENE-040426-1268 17.0079 94.6154 MSI2B
id 29576475 Habenula all 53 Markers Hb10 ZDB-GENE-040426-1268 14.5351 96.1538 MSI2B
id 29576475 Habenula all 53 Markers Hb12 ZDB-GENE-040426-1268 26.2867 96.6102 MSI2B
id 29576475 Habenula all 53 Markers Hb05 ZDB-GENE-040426-1268 30.3106 97.5155 MSI2B
id 29576475 Habenula all 53 Markers Hb15 ZDB-GENE-040426-1268 22.9432 96.7742 MSI2B
id 29576475 Habenula all 53 Markers Hb03 ZDB-GENE-040426-1268 20.88 96.4824 MSI2B
id 29576475 Habenula all 53 Markers Hb04 ZDB-GENE-040426-1268 30.9272 98.3871 MSI2B
id 29576475 Habenula all 53 Markers Hb08 ZDB-GENE-040426-1268 12.9797 93.3206 MSI2B
id 29576475 Habenula all 53 Markers 16 ZDB-GENE-040426-1268 12.9658 94.4915 MSI2B
id 29576475 Habenula all 53 Markers Hb06 ZDB-GENE-040426-1268 27.9739 98.0132 MSI2B
id 29576475 Habenula all 53 Markers Hb07 ZDB-GENE-040426-1268 25.4065 95.7831 MSI2B
id 29576475 Habenula all 53 Markers Hb14 ZDB-GENE-040426-1268 1.65232 35.2941 MSI2B
id 29576475 Habenula all 53 Markers Hb13 ZDB-GENE-040426-1268 14.0108 79.2929 MSI2B
id 29608178 Brain all 42 Markers Granule cell neurons ZDB-GENE-040426-1268 0.0845988 1.67384 MSI2
id 29608178 Brain all 42 Markers Radial glia cells (progenitors) ZDB-GENE-040426-1268 0.166196 4.85003 MSI2
id 29608178 Brain all 42 Markers rtn4rl2b+ pallium neurons ZDB-GENE-040426-1268 0.0885394 2.75735 MSI2
id 29608178 Brain all 42 Markers sst3+ neurons ZDB-GENE-040426-1268 0.132697 1.99715 MSI2
id 29608178 Brain all 42 Markers hmx3a+, hmx2+ neurons ZDB-GENE-040426-1268 0.0691511 2.17077 MSI2
id 29608178 Brain all 42 Markers phox2+ hindbrain neurons ZDB-GENE-040426-1268 0.165757 3.24006 MSI2
id 29608178 Brain all 42 Markers tcf7I2+, barhl2+ neurons ZDB-GENE-040426-1268 0.097176 2.47363 MSI2
id 29608178 Brain all 42 Markers Nascent forebrain neurons ZDB-GENE-040426-1268 0.0920689 2.06186 MSI2
id 29608178 Brain all 42 Markers Unclassified neurons ZDB-GENE-040426-1268 0.101234 2.42192 MSI2
id 29608178 Brain all 42 Markers penkb+ neurons ZDB-GENE-040426-1268 0.0635417 2.16049 MSI2
id 29608178 Brain all 42 Markers GABAergic subpallium neurons ZDB-GENE-040426-1268 0.135742 3.22148 MSI2
id 29608178 Brain all 42 Markers bnc2+, onecut1+ neurons ZDB-GENE-040426-1268 0.0831231 2.36869 MSI2
id 29608178 Brain all 42 Markers tfap2b+, barhl2+ midbrain neurons ZDB-GENE-040426-1268 0.129888 2.15128 MSI2
id 29608178 Brain all 42 Markers GABAergic hindbrain neurons ZDB-GENE-040426-1268 0.103453 2.98507 MSI2
id 29608178 Brain all 42 Markers GABAergic optic tectum neurons ZDB-GENE-040426-1268 0.0995745 2.05114 MSI2
id 29608178 Brain all 42 Markers Progenitor cells ZDB-GENE-040426-1268 0.197464 6.28748 MSI2
id 29608178 Brain all 42 Markers rtn4rl2b+ eomesa+ pallium neurons ZDB-GENE-040426-1268 0.0648682 2.84091 MSI2
id 29608178 Brain all 42 Markers Torus Longitudinalis neurons ZDB-GENE-040426-1268 0.0527329 1.69444 MSI2
id 29608178 Brain all 42 Markers atf5b+ neurons ZDB-GENE-040426-1268 0.065262 1.86256 MSI2
id 29608178 Brain all 42 Markers Ventral forebrain neurons ZDB-GENE-040426-1268 0.0922487 3.28146 MSI2
id 29608178 Brain all 42 Markers nefma+ glutamergic neurons (midbrain) ZDB-GENE-040426-1268 0.0997553 3.06389 MSI2
id 29608178 Brain all 42 Markers fezf1+, otpa+ neurons ZDB-GENE-040426-1268 0.0807191 2.70492 MSI2
id 29608178 Brain all 42 Markers Nascent forebrain neurons ZDB-GENE-040426-1268 0.692147 10.5904 msi2b
id 29608178 Brain all 42 Markers Unclassified neurons ZDB-GENE-040426-1268 0.582893 10.4525 msi2b
id 29608178 Brain all 42 Markers penkb+ neurons ZDB-GENE-040426-1268 1.05289 22.6852 msi2b
id 29608178 Brain all 42 Markers Radial glia cells (progenitors) ZDB-GENE-040426-1268 0.582186 12.7632 msi2b
id 29608178 Brain all 42 Markers rtn4rl2b+ pallium neurons ZDB-GENE-040426-1268 1.40956 25 msi2b
id 29608178 Brain all 42 Markers sst3+ neurons ZDB-GENE-040426-1268 0.527341 10.4137 msi2b
id 29608178 Brain all 42 Markers hmx3a+, hmx2+ neurons ZDB-GENE-040426-1268 0.721066 14.0376 msi2b
id 29608178 Brain all 42 Markers phox2+ hindbrain neurons ZDB-GENE-040426-1268 0.487241 9.72018 msi2b
id 29608178 Brain all 42 Markers GABAergic hindbrain neurons ZDB-GENE-040426-1268 1.27144 20.5757 msi2b
id 29608178 Brain all 42 Markers tcf7I2+, barhl2+ neurons ZDB-GENE-040426-1268 0.569813 11.2768 msi2b
id 29608178 Brain all 42 Markers GABAergic subpallium neurons ZDB-GENE-040426-1268 0.782389 12.953 msi2b
id 29608178 Brain all 42 Markers bnc2+, onecut1+ neurons ZDB-GENE-040426-1268 0.363383 6.69413 msi2b
id 29608178 Brain all 42 Markers Granule cell neurons ZDB-GENE-040426-1268 0.373667 6.52001 msi2b
id 29608178 Brain all 42 Markers tfap2b+, barhl2+ midbrain neurons ZDB-GENE-040426-1268 0.412249 7.63359 msi2b
id 29608178 Brain all 42 Markers GABAergic optic tectum neurons ZDB-GENE-040426-1268 0.859042 12.8407 msi2b
id 29608178 Brain all 42 Markers Progenitor cells ZDB-GENE-040426-1268 0.407864 10.7076 msi2b
id 29608178 Brain all 42 Markers rtn4rl2b+ eomesa+ pallium neurons ZDB-GENE-040426-1268 0.198 7.19697 msi2b
id 29608178 Brain all 42 Markers Torus Longitudinalis neurons ZDB-GENE-040426-1268 0.319139 7.97222 msi2b
id 29608178 Brain all 42 Markers atf5b+ neurons ZDB-GENE-040426-1268 0.78113 12.0745 msi2b
id 29608178 Brain all 42 Markers Ventral forebrain neurons ZDB-GENE-040426-1268 1.19896 22.7673 msi2b
id 29608178 Brain all 42 Markers nefma+ glutamergic neurons (midbrain) ZDB-GENE-040426-1268 0.833925 18.97 msi2b
id 29608178 Brain all 42 Markers fezf1+, otpa+ neurons ZDB-GENE-040426-1268 0.434089 10.7377 msi2b
id 31018142 Brain IL4 34 Markers OPC_OD_1 ZDB-GENE-040426-1268 0.353607 10 msi2b
id 31018142 Brain IL4 34 Markers PC_5 ZDB-GENE-040426-1268 0.450815 22.7273 msi2b
id 31018142 Brain AB42 33 Markers PC_6 ZDB-GENE-040426-1268 3.08667 83.3333 msi2b
id 31018142 Brain IL4 34 Markers NN_0 ZDB-GENE-040426-1268 0.766198 14.2857 msi2b
id 31018142 Brain AB42 33 Markers NN_3 ZDB-GENE-040426-1268 2.32658 47.0588 msi2b
id 31018142 Brain IL4 34 Markers NN_2 ZDB-GENE-040426-1268 0.229234 6.25 msi2b
id 31018142 Brain AB42 33 Markers PC_1 ZDB-GENE-040426-1268 0.546855 20.8333 msi2b
id 31018142 Brain IL4 34 Markers PC_4 ZDB-GENE-040426-1268 1.02604 17.3913 msi2b
id 31018142 Brain AB42 33 Markers OPC_OD_2 ZDB-GENE-040426-1268 1.20406 42.8571 msi2b
id 31018142 Brain IL4 34 Markers PC_1 ZDB-GENE-040426-1268 0.819053 26 msi2b
id 31018142 Brain AB42 33 Markers PC_4 ZDB-GENE-040426-1268 0.703388 23.5294 msi2b
id 31018142 Brain IL4 34 Markers NN_4 ZDB-GENE-040426-1268 3.46892 45.4545 msi2b
id 31018142 Brain PBS 35 Markers PC_0 ZDB-GENE-040426-1268 0.289228 15.4762 msi2b
id 31018142 Brain IL4 34 Markers PC_7 ZDB-GENE-040426-1268 1.06328 20 msi2b
id 31018142 Brain PBS 35 Markers PC_2 ZDB-GENE-040426-1268 0.334884 18.75 msi2b
id 31018142 Brain IL4 34 Markers OPC_OD_2 ZDB-GENE-040426-1268 0.931149 42.8571 msi2b
id 31018142 Brain PBS 35 Markers PC_8 ZDB-GENE-040426-1268 0.428743 25 msi2b
id 31018142 Brain PBS 35 Markers PC_1 ZDB-GENE-040426-1268 0.457116 19.5122 msi2b
id 31018142 Brain PBS 35 Markers PC_5 ZDB-GENE-040426-1268 0.542313 30.4348 msi2b
id 31018142 Brain PBS 35 Markers OPC_OD_1 ZDB-GENE-040426-1268 0.302618 6.66667 msi2b
id 31018142 Brain PBS 35 Markers PC_7 ZDB-GENE-040426-1268 0.994236 33.3333 msi2b
id 31018142 Brain PBS 35 Markers PC_3 ZDB-GENE-040426-1268 0.211957 11.7647 msi2b
id 31018142 Brain merged 32 Markers NN_4 ZDB-GENE-040426-1268 2.51591 43.3962 msi2b
id 31018142 Brain AB42 33 Markers PC_0 ZDB-GENE-040426-1268 0.309213 14.4578 msi2b
id 31018142 Brain merged 32 Markers NN_1 ZDB-GENE-040426-1268 1.95279 25.1462 msi2b
id 31018142 Brain AB42 33 Markers PC_3 ZDB-GENE-040426-1268 0.492716 14.6341 msi2b
id 31018142 Brain merged 32 Markers PC_2 ZDB-GENE-040426-1268 0.405205 20.3822 msi2b
id 31018142 Brain merged 32 Markers OPC_OD_1 ZDB-GENE-040426-1268 0.893041 15.3846 msi2b
id 31018142 Brain merged 32 Markers PC_0 ZDB-GENE-040426-1268 0.333073 15.6398 msi2b
id 31018142 Brain merged 32 Markers PC_8 ZDB-GENE-040426-1268 0.167651 9.52381 msi2b
id 31018142 Brain merged 32 Markers NN_5 ZDB-GENE-040426-1268 10.0934 72.5 msi2b
id 31018142 Brain merged 32 Markers PC_7 ZDB-GENE-040426-1268 1.02913 28 msi2b
id 31018142 Brain merged 32 Markers NN_2 ZDB-GENE-040426-1268 0.172357 4.79042 msi2b
id 31018142 Brain AB42 33 Markers NN_0 ZDB-GENE-040426-1268 0.592509 7.89474 msi2b
id 31018142 Brain AB42 33 Markers PC_7 ZDB-GENE-040426-1268 1.02457 33.3333 msi2b
id 31018142 Brain IL4 34 Markers PC_0 ZDB-GENE-040426-1268 0.461786 18.1818 msi2b
id 31018142 Brain AB42 33 Markers NN_2 ZDB-GENE-040426-1268 0.160378 5.19481 msi2b
id 31018142 Brain IL4 34 Markers PC_2 ZDB-GENE-040426-1268 0.540871 23.6364 msi2b
id 31018142 Brain AB42 33 Markers NN_4 ZDB-GENE-040426-1268 1.67086 36 msi2b
id 31018142 Brain IL4 34 Markers NN_1 ZDB-GENE-040426-1268 1.96251 24.3902 msi2b
id 31018142 Brain AB42 33 Markers NN_1 ZDB-GENE-040426-1268 1.61308 24.1379 msi2b
id 31018142 Brain IL4 34 Markers NN_3 ZDB-GENE-040426-1268 1.41296 6.25 msi2b
id 31018142 Brain AB42 33 Markers OPC_OD_1 ZDB-GENE-040426-1268 1.91095 28.5714 msi2b
id 31018142 Brain IL4 34 Markers NN_7 ZDB-GENE-040426-1268 1.1558 25 msi2b
id 31018142 Brain AB42 33 Markers PC_8 ZDB-GENE-040426-1268 0.257958 14.2857 msi2b
id 31018142 Brain IL4 34 Markers PC_3 ZDB-GENE-040426-1268 0.242382 13.0435 msi2b
id 31018142 Brain PBS 35 Markers NN_2 ZDB-GENE-040426-1268 0.156879 3.44828 msi2b
id 31018142 Brain IL4 34 Markers Im ZDB-GENE-040426-1268 0.254998 5.26316 msi2b
id 31018142 Brain PBS 35 Markers OPC_OD_2 ZDB-GENE-040426-1268 0.957142 40 msi2b
id 31018142 Brain IL4 34 Markers NN_5 ZDB-GENE-040426-1268 8.79266 60 msi2b
id 31018142 Brain PBS 35 Markers NN_4 ZDB-GENE-040426-1268 3.14198 52.9412 msi2b
id 31018142 Brain PBS 35 Markers NN_1 ZDB-GENE-040426-1268 2.22091 26.3889 msi2b
id 31018142 Brain PBS 35 Markers PC_6 ZDB-GENE-040426-1268 1.73444 40 msi2b
id 31018142 Brain PBS 35 Markers NN_3 ZDB-GENE-040426-1268 2.30789 41.1765 msi2b
id 31018142 Brain PBS 35 Markers NN_5 ZDB-GENE-040426-1268 11.6997 83.3333 msi2b
id 31018142 Brain PBS 35 Markers NN_0 ZDB-GENE-040426-1268 1.44895 19.2308 msi2b
id 31018142 Brain PBS 35 Markers PC_4 ZDB-GENE-040426-1268 0.564088 15.1515 msi2b
id 31018142 Brain merged 32 Markers PC_6 ZDB-GENE-040426-1268 2.67635 70.8333 msi2b
id 31018142 Brain AB42 33 Markers PC_2 ZDB-GENE-040426-1268 0.327281 18.4211 msi2b
id 31018142 Brain merged 32 Markers NN_3 ZDB-GENE-040426-1268 2.14499 36.9048 msi2b
id 31018142 Brain AB42 33 Markers NN_5 ZDB-GENE-040426-1268 9.53808 69.5652 msi2b
id 31018142 Brain merged 32 Markers NN_0 ZDB-GENE-040426-1268 0.84432 11.9403 msi2b
id 31018142 Brain merged 32 Markers PC_1 ZDB-GENE-040426-1268 0.607779 22.0859 msi2b
id 31018142 Brain merged 32 Markers PC_5 ZDB-GENE-040426-1268 0.361147 19.3548 msi2b
id 31018142 Brain merged 32 Markers OPC_OD_2 ZDB-GENE-040426-1268 1.10875 42.4242 msi2b
id 31018142 Brain merged 32 Markers Im ZDB-GENE-040426-1268 0.103084 2.12766 msi2b
id 31018142 Brain merged 32 Markers PC_4 ZDB-GENE-040426-1268 0.734767 18.8889 msi2b
id 31018142 Brain merged 32 Markers PC_3 ZDB-GENE-040426-1268 0.305513 13.0435 msi2b
id 31018142 Brain merged 32 Markers NN_7 ZDB-GENE-040426-1268 0.355631 7.69231 msi2b