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Gene:
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  • 325084
  • ZDB-GENE-030131-3809

Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq

datasets(53) Tissue Type: - PubMed Id: 29576475 - Treatment Condition : WT Species : Zebrafish

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

datasets(42) Tissue Type: - PubMed Id: 29608178 - Treatment Condition : WT Species : Zebrafish

Single-Cell Transcriptomics Analyses of Neural Stem Cell Heterogeneity and Contextual Plasticity in a Zebrafish Brain Model of Amyloid Toxicity

datasets(32,33,35,34) Tissue Type: - PubMed Id: 31018142 - Treatment Condition : IL-4 treated Species : Zebrafish


Single Cell Gene Data Details


Rows:78
id pubmed_id tissue type condition dataset ID dataset id cluster name cluster description Species specific geneid avg exp % exp gene symbol
id 29576475 Habenula all 53 Markers Hb06 ZDB-GENE-030131-3809 0.0170508 0.331126 SRC
id 29576475 Habenula all 53 Markers Hb07 ZDB-GENE-030131-3809 0.222603 5.42169 SRC
id 29576475 Habenula all 53 Markers Hb14 ZDB-GENE-030131-3809 0.139723 2.94118 SRC
id 29576475 Habenula all 53 Markers Hb11 ZDB-GENE-030131-3809 0.108045 2.54237 SRC
id 29576475 Habenula all 53 Markers Hb02 ZDB-GENE-030131-3809 0.143967 2.82051 SRC
id 29576475 Habenula all 53 Markers Hb10 ZDB-GENE-030131-3809 0.0647 3.84615 SRC
id 29576475 Habenula all 53 Markers Hb09 ZDB-GENE-030131-3809 0.162602 5.50162 SRC
id 29576475 Habenula all 53 Markers Hb01 ZDB-GENE-030131-3809 0.0300997 0.641026 SRC
id 29576475 Habenula all 53 Markers Hb12 ZDB-GENE-030131-3809 0.418448 8.47458 SRC
id 29576475 Habenula all 53 Markers Hb05 ZDB-GENE-030131-3809 0.0474776 1.24224 SRC
id 29576475 Habenula all 53 Markers Hb15 ZDB-GENE-030131-3809 0.106815 3.22581 SRC
id 29576475 Habenula all 53 Markers Hb08 ZDB-GENE-030131-3809 0.117939 3.05344 SRC
id 29576475 Habenula all 53 Markers Hb13 ZDB-GENE-030131-3809 0.161807 4.54545 SRC
id 29576475 Habenula all 53 Markers 16 ZDB-GENE-030131-3809 0.0207202 0.423729 SRC
id 29576475 Habenula all 53 Markers Hb03 ZDB-GENE-030131-3809 0.0601212 1.50754 SRC
id 29576475 Habenula all 53 Markers Hb04 ZDB-GENE-030131-3809 0.0663955 0.967742 SRC
id 29608178 Brain all 42 Markers rtn4rl2b+ eomesa+ pallium neurons ZDB-GENE-030131-3809 0.0813556 3.78788 src
id 29608178 Brain all 42 Markers nefma+ glutamergic neurons (midbrain) ZDB-GENE-030131-3809 0.169242 5.01956 src
id 29608178 Brain all 42 Markers Granule cell neurons ZDB-GENE-030131-3809 0.07447 1.49849 src
id 29608178 Brain all 42 Markers Radial glia cells (progenitors) ZDB-GENE-030131-3809 0.0501241 1.40396 src
id 29608178 Brain all 42 Markers hmx3a+, hmx2+ neurons ZDB-GENE-030131-3809 0.196903 4.48625 src
id 29608178 Brain all 42 Markers tfap2b+, barhl2+ midbrain neurons ZDB-GENE-030131-3809 0.125601 2.70645 src
id 29608178 Brain all 42 Markers tcf7I2+, barhl2+ neurons ZDB-GENE-030131-3809 0.098368 2.54638 src
id 29608178 Brain all 42 Markers Torus Longitudinalis neurons ZDB-GENE-030131-3809 0.143304 3.5 src
id 29608178 Brain all 42 Markers fezf1+, otpa+ neurons ZDB-GENE-030131-3809 0.0993162 3.52459 src
id 29608178 Brain all 42 Markers GABAergic hindbrain neurons ZDB-GENE-030131-3809 0.133654 2.98507 src
id 29608178 Brain all 42 Markers GABAergic optic tectum neurons ZDB-GENE-030131-3809 0.119251 2.45856 src
id 29608178 Brain all 42 Markers atf5b+ neurons ZDB-GENE-030131-3809 0.139064 3.01863 src
id 29608178 Brain all 42 Markers GABAergic subpallium neurons ZDB-GENE-030131-3809 0.0876201 1.94631 src
id 29608178 Brain all 42 Markers Nascent forebrain neurons ZDB-GENE-030131-3809 0.136769 2.99906 src
id 29608178 Brain all 42 Markers Unclassified neurons ZDB-GENE-030131-3809 0.137563 3.50542 src
id 29608178 Brain all 42 Markers sst3+ neurons ZDB-GENE-030131-3809 0.125442 2.56776 src
id 29608178 Brain all 42 Markers phox2+ hindbrain neurons ZDB-GENE-030131-3809 0.0462487 1.7673 src
id 29608178 Brain all 42 Markers Progenitor cells ZDB-GENE-030131-3809 0.0520562 1.76461 src
id 29608178 Brain all 42 Markers penkb+ neurons ZDB-GENE-030131-3809 0.0878408 2.9321 src
id 29608178 Brain all 42 Markers Ventral forebrain neurons ZDB-GENE-030131-3809 0.0752188 2.67253 src
id 29608178 Brain all 42 Markers bnc2+, onecut1+ neurons ZDB-GENE-030131-3809 0.0932288 2.67765 src
id 31018142 Brain merged 32 Markers PC_0 ZDB-GENE-030131-3809 0.00840904 0.473934 src
id 31018142 Brain AB42 33 Markers PC_2 ZDB-GENE-030131-3809 0.0662199 2.63158 src
id 31018142 Brain merged 32 Markers PC_3 ZDB-GENE-030131-3809 0.0425339 2.17391 src
id 31018142 Brain AB42 33 Markers NN_2 ZDB-GENE-030131-3809 0.0615057 2.5974 src
id 31018142 Brain merged 32 Markers NN_4 ZDB-GENE-030131-3809 0.290851 7.54717 src
id 31018142 Brain AB42 33 Markers NN_3 ZDB-GENE-030131-3809 0.0861505 2.94118 src
id 31018142 Brain merged 32 Markers NN_1 ZDB-GENE-030131-3809 0.138149 3.50877 src
id 31018142 Brain AB42 33 Markers PC_1 ZDB-GENE-030131-3809 0.0515413 2.77778 src
id 31018142 Brain merged 32 Markers OPC_OD_2 ZDB-GENE-030131-3809 0.102057 6.06061 src
id 31018142 Brain AB42 33 Markers PC_4 ZDB-GENE-030131-3809 0.132784 5.88235 src
id 31018142 Brain merged 32 Markers PC_2 ZDB-GENE-030131-3809 0.0505686 3.18471 src
id 31018142 Brain merged 32 Markers PC_7 ZDB-GENE-030131-3809 0.175108 8 src
id 31018142 Brain PBS 35 Markers NN_1 ZDB-GENE-030131-3809 0.102105 4.16667 src
id 31018142 Brain PBS 35 Markers NN_2 ZDB-GENE-030131-3809 0.0363282 1.72414 src
id 31018142 Brain AB42 33 Markers PC_7 ZDB-GENE-030131-3809 0.445395 16.6667 src
id 31018142 Brain PBS 35 Markers OPC_OD_2 ZDB-GENE-030131-3809 0.279408 20 src
id 31018142 Brain IL4 34 Markers NN_0 ZDB-GENE-030131-3809 0.447041 8.57143 src
id 31018142 Brain PBS 35 Markers PC_5 ZDB-GENE-030131-3809 0.0585487 4.34783 src
id 31018142 Brain IL4 34 Markers NN_2 ZDB-GENE-030131-3809 0.17566 3.125 src
id 31018142 Brain PBS 35 Markers PC_7 ZDB-GENE-030131-3809 0.18948 11.1111 src
id 31018142 Brain IL4 34 Markers PC_1 ZDB-GENE-030131-3809 0.0532601 4 src
id 31018142 Brain merged 32 Markers PC_5 ZDB-GENE-030131-3809 0.0217197 1.6129 src
id 31018142 Brain AB42 33 Markers NN_0 ZDB-GENE-030131-3809 0.326556 6.14035 src
id 31018142 Brain merged 32 Markers NN_5 ZDB-GENE-030131-3809 0.247303 7.5 src
id 31018142 Brain AB42 33 Markers NN_5 ZDB-GENE-030131-3809 0.225777 8.69565 src
id 31018142 Brain merged 32 Markers NN_2 ZDB-GENE-030131-3809 0.0746354 2.39521 src
id 31018142 Brain AB42 33 Markers NN_4 ZDB-GENE-030131-3809 0.40935 12 src
id 31018142 Brain merged 32 Markers NN_3 ZDB-GENE-030131-3809 0.061408 2.38095 src
id 31018142 Brain AB42 33 Markers NN_1 ZDB-GENE-030131-3809 0.206074 3.44828 src
id 31018142 Brain merged 32 Markers PC_1 ZDB-GENE-030131-3809 0.0391042 2.45399 src
id 31018142 Brain AB42 33 Markers OPC_OD_2 ZDB-GENE-030131-3809 0.0938491 4.7619 src
id 31018142 Brain merged 32 Markers NN_0 ZDB-GENE-030131-3809 0.263054 4.97512 src
id 31018142 Brain merged 32 Markers PC_4 ZDB-GENE-030131-3809 0.0501629 2.22222 src
id 31018142 Brain IL4 34 Markers NN_4 ZDB-GENE-030131-3809 0.471032 9.09091 src
id 31018142 Brain PBS 35 Markers PC_3 ZDB-GENE-030131-3809 0.115092 5.88235 src
id 31018142 Brain PBS 35 Markers PC_0 ZDB-GENE-030131-3809 0.0211227 1.19048 src
id 31018142 Brain IL4 34 Markers PC_2 ZDB-GENE-030131-3809 0.041053 3.63636 src
id 31018142 Brain PBS 35 Markers PC_2 ZDB-GENE-030131-3809 0.0494531 3.125 src
id 31018142 Brain IL4 34 Markers NN_1 ZDB-GENE-030131-3809 0.105357 2.43902 src
id 31018142 Brain PBS 35 Markers NN_5 ZDB-GENE-030131-3809 0.391604 8.33333 src
id 31018142 Brain IL4 34 Markers NN_3 ZDB-GENE-030131-3809 0.139322 6.25 src