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Gene:
- setx
- 562474
- ZDB-GENE-070402-1
Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq
datasets(53)
Tissue Type:
- PubMed Id:
29576475
- Treatment Condition : WT
Species : Zebrafish
Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain
datasets(42)
Tissue Type:
- PubMed Id:
29608178
- Treatment Condition : WT
Species : Zebrafish
Single-Cell Transcriptomics Analyses of Neural Stem Cell Heterogeneity and Contextual Plasticity in a Zebrafish Brain Model of Amyloid Toxicity
datasets(32,33,34,35)
Tissue Type:
- PubMed Id:
31018142
- Treatment Condition : IL-4 treated
Species : Zebrafish
Single Cell Gene Data Details
Rows:42
| id | pubmed_id | tissue type | condition | dataset ID | dataset id | cluster name | cluster description | Species specific geneid | avg exp | % exp | gene symbol |
|---|---|---|---|---|---|---|---|---|---|---|---|
| id | 29576475 | Habenula | all | 53 | Markers | Hb05 | ZDB-GENE-070402-1 | 0.0381991 | 0.621118 | SETX | |
| id | 29576475 | Habenula | all | 53 | Markers | Hb01 | ZDB-GENE-070402-1 | 0.0550733 | 0.915751 | SETX | |
| id | 29576475 | Habenula | all | 53 | Markers | Hb08 | ZDB-GENE-070402-1 | 0.0153064 | 0.572519 | SETX | |
| id | 29576475 | Habenula | all | 53 | Markers | Hb13 | ZDB-GENE-070402-1 | 0.0312061 | 1.0101 | SETX | |
| id | 29576475 | Habenula | all | 53 | Markers | 16 | ZDB-GENE-070402-1 | 0.0281547 | 0.423729 | SETX | |
| id | 29576475 | Habenula | all | 53 | Markers | Hb06 | ZDB-GENE-070402-1 | 0.015798 | 0.331126 | SETX | |
| id | 29576475 | Habenula | all | 53 | Markers | Hb07 | ZDB-GENE-070402-1 | 0.200151 | 4.21687 | SETX | |
| id | 29576475 | Habenula | all | 53 | Markers | Hb09 | ZDB-GENE-070402-1 | 0.0315992 | 1.2945 | SETX | |
| id | 29576475 | Habenula | all | 53 | Markers | Hb04 | ZDB-GENE-070402-1 | 0.075288 | 1.6129 | SETX | |
| id | 29576475 | Habenula | all | 53 | Markers | Hb02 | ZDB-GENE-070402-1 | 0.0797722 | 1.53846 | SETX | |
| id | 29576475 | Habenula | all | 53 | Markers | Hb10 | ZDB-GENE-070402-1 | 0.0318825 | 1.92308 | SETX | |
| id | 29608178 | Brain | all | 42 | Markers | phox2+ hindbrain neurons | ZDB-GENE-070402-1 | 0.0615284 | 1.91458 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | penkb+ neurons | ZDB-GENE-070402-1 | 0.0709163 | 2.31481 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | Unclassified neurons | ZDB-GENE-070402-1 | 0.103041 | 2.29446 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | sst3+ neurons | ZDB-GENE-070402-1 | 0.0683582 | 1.56919 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | Granule cell neurons | ZDB-GENE-070402-1 | 0.054781 | 1.11589 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | GABAergic hindbrain neurons | ZDB-GENE-070402-1 | 0.0732661 | 2.1322 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | rtn4rl2b+ eomesa+ pallium neurons | ZDB-GENE-070402-1 | 0.045049 | 2.0202 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | nefma+ glutamergic neurons (midbrain) | ZDB-GENE-070402-1 | 0.0705992 | 2.28162 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | tfap2b+, barhl2+ midbrain neurons | ZDB-GENE-070402-1 | 0.0390826 | 0.971548 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | Torus Longitudinalis neurons | ZDB-GENE-070402-1 | 0.0483451 | 1.36111 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | fezf1+, otpa+ neurons | ZDB-GENE-070402-1 | 0.0855105 | 2.45902 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | hmx3a+, hmx2+ neurons | ZDB-GENE-070402-1 | 0.0508893 | 1.44718 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | tcf7I2+, barhl2+ neurons | ZDB-GENE-070402-1 | 0.0579265 | 1.67334 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | Radial glia cells (progenitors) | ZDB-GENE-070402-1 | 0.0492819 | 1.78685 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | GABAergic optic tectum neurons | ZDB-GENE-070402-1 | 0.0586944 | 1.30655 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | atf5b+ neurons | ZDB-GENE-070402-1 | 0.0564137 | 1.28452 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | GABAergic subpallium neurons | ZDB-GENE-070402-1 | 0.0929484 | 2.28188 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | Progenitor cells | ZDB-GENE-070402-1 | 0.0255073 | 1.13072 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | Ventral forebrain neurons | ZDB-GENE-070402-1 | 0.0597955 | 2.19892 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | Nascent forebrain neurons | ZDB-GENE-070402-1 | 0.0695993 | 1.64011 | setx | |
| id | 29608178 | Brain | all | 42 | Markers | bnc2+, onecut1+ neurons | ZDB-GENE-070402-1 | 0.0646245 | 2.05973 | setx | |
| id | 31018142 | Brain | merged | 32 | Markers | PC_5 | ZDB-GENE-070402-1 | 0.0179511 | 1.6129 | setx | |
| id | 31018142 | Brain | merged | 32 | Markers | NN_2 | ZDB-GENE-070402-1 | 0.0292099 | 0.598802 | setx | |
| id | 31018142 | Brain | AB42 | 33 | Markers | NN_2 | ZDB-GENE-070402-1 | 0.0633513 | 1.2987 | setx | |
| id | 31018142 | Brain | IL4 | 34 | Markers | PC_3 | ZDB-GENE-070402-1 | 0.0483737 | 2.17391 | setx | |
| id | 31018142 | Brain | PBS | 35 | Markers | PC_5 | ZDB-GENE-070402-1 | 0.0483898 | 4.34783 | setx | |
| id | 31018142 | Brain | merged | 32 | Markers | PC_2 | ZDB-GENE-070402-1 | 0.00912395 | 0.636943 | setx | |
| id | 31018142 | Brain | merged | 32 | Markers | PC_3 | ZDB-GENE-070402-1 | 0.0161246 | 0.724638 | setx | |
| id | 31018142 | Brain | merged | 32 | Markers | NN_1 | ZDB-GENE-070402-1 | 0.00783173 | 0.584795 | setx | |
| id | 31018142 | Brain | IL4 | 34 | Markers | PC_2 | ZDB-GENE-070402-1 | 0.0260447 | 1.81818 | setx | |
| id | 31018142 | Brain | PBS | 35 | Markers | NN_1 | ZDB-GENE-070402-1 | 0.0186004 | 1.38889 | setx |