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Gene:
  • si:zfos-2326c3.2
  • 561669
  • ZDB-GENE-091113-25

Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq

datasets(53) Tissue Type: - PubMed Id: 29576475 - Treatment Condition : WT Species : Zebrafish

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

datasets(42) Tissue Type: - PubMed Id: 29608178 - Treatment Condition : WT Species : Zebrafish

Single-Cell Transcriptomics Analyses of Neural Stem Cell Heterogeneity and Contextual Plasticity in a Zebrafish Brain Model of Amyloid Toxicity

datasets(33,35,34,32) Tissue Type: - PubMed Id: 31018142 - Treatment Condition : IL-4 treated Species : Zebrafish

Single Cell Gene Data Details


Rows:65
id pubmed_id tissue type condition dataset ID dataset id cluster name cluster description Species specific geneid avg exp % exp gene symbol
id 29576475 Habenula all 53 Markers Hb03 ZDB-GENE-091113-25 0.0170113 0.502513 SI:ZFOS-2326C3.2
id 29576475 Habenula all 53 Markers Hb13 ZDB-GENE-091113-25 0.0431613 1.51515 SI:ZFOS-2326C3.2
id 29576475 Habenula all 53 Markers Hb01 ZDB-GENE-091113-25 0.00162974 0.0915751 SI:ZFOS-2326C3.2
id 29608178 Brain all 42 Markers Granule cell neurons ZDB-GENE-091113-25 0.110568 2.43902 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers rtn4rl2b+ eomesa+ pallium neurons ZDB-GENE-091113-25 0.230105 9.34343 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers nefma+ glutamergic neurons (midbrain) ZDB-GENE-091113-25 0.143964 5.86701 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers hmx3a+, hmx2+ neurons ZDB-GENE-091113-25 0.125049 4.0521 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers tfap2b+, barhl2+ midbrain neurons ZDB-GENE-091113-25 0.191029 4.37196 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers tcf7I2+, barhl2+ neurons ZDB-GENE-091113-25 0.151483 4.36522 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers Torus Longitudinalis neurons ZDB-GENE-091113-25 0.0817312 2.91667 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers fezf1+, otpa+ neurons ZDB-GENE-091113-25 0.141048 4.91803 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers GABAergic hindbrain neurons ZDB-GENE-091113-25 0.0745078 2.87846 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers Radial glia cells (progenitors) ZDB-GENE-091113-25 0.20061 6.12636 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers GABAergic subpallium neurons ZDB-GENE-091113-25 0.109813 2.95302 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers Nascent forebrain neurons ZDB-GENE-091113-25 0.100172 2.62418 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers GABAergic optic tectum neurons ZDB-GENE-091113-25 0.279453 5.92863 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers atf5b+ neurons ZDB-GENE-091113-25 0.155934 4.75273 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers phox2+ hindbrain neurons ZDB-GENE-091113-25 0.18189 4.71281 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers Progenitor cells ZDB-GENE-091113-25 0.137256 5.51653 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers penkb+ neurons ZDB-GENE-091113-25 0.284438 8.7963 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers Ventral forebrain neurons ZDB-GENE-091113-25 0.15991 5.54804 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers bnc2+, onecut1+ neurons ZDB-GENE-091113-25 0.143674 4.53141 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers Unclassified neurons ZDB-GENE-091113-25 0.552057 13.9579 si:zfos-2326c3.2
id 29608178 Brain all 42 Markers sst3+ neurons ZDB-GENE-091113-25 0.49845 10.1284 si:zfos-2326c3.2
id 31018142 Brain AB42 33 Markers NN_4 ZDB-GENE-091113-25 0.0886721 4 NRK
id 31018142 Brain PBS 35 Markers PC_3 ZDB-GENE-091113-25 0.150345 5.88235 NRK
id 31018142 Brain AB42 33 Markers PC_1 ZDB-GENE-091113-25 0.0271533 1.38889 NRK
id 31018142 Brain PBS 35 Markers PC_2 ZDB-GENE-091113-25 0.031344 1.5625 NRK
id 31018142 Brain IL4 34 Markers PC_2 ZDB-GENE-091113-25 0.0538782 3.63636 NRK
id 31018142 Brain PBS 35 Markers PC_4 ZDB-GENE-091113-25 0.0714694 3.0303 NRK
id 31018142 Brain IL4 34 Markers PC_1 ZDB-GENE-091113-25 0.039116 2 NRK
id 31018142 Brain IL4 34 Markers PC_0 ZDB-GENE-091113-25 0.0608169 2.27273 NRK
id 31018142 Brain PBS 35 Markers PC_1 ZDB-GENE-091113-25 0.0280541 2.43902 NRK
id 31018142 Brain merged 32 Markers NN_6 ZDB-GENE-091113-25 0.11597 3.0303 NRK
id 31018142 Brain AB42 33 Markers PC_3 ZDB-GENE-091113-25 0.0933419 2.43902 NRK
id 31018142 Brain merged 32 Markers NN_1 ZDB-GENE-091113-25 0.0389402 1.16959 NRK
id 31018142 Brain AB42 33 Markers PC_6 ZDB-GENE-091113-25 0.0822569 5.55556 NRK
id 31018142 Brain merged 32 Markers NN_0 ZDB-GENE-091113-25 0.238138 6.46766 NRK
id 31018142 Brain merged 32 Markers PC_8 ZDB-GENE-091113-25 0.187858 9.52381 NRK
id 31018142 Brain merged 32 Markers PC_5 ZDB-GENE-091113-25 0.107648 4.83871 NRK
id 31018142 Brain merged 32 Markers PC_7 ZDB-GENE-091113-25 0.160449 4 NRK
id 31018142 Brain merged 32 Markers Im ZDB-GENE-091113-25 0.138331 4.25532 NRK
id 31018142 Brain AB42 33 Markers PC_2 ZDB-GENE-091113-25 0.0725134 5.26316 NRK
id 31018142 Brain merged 32 Markers NN_2 ZDB-GENE-091113-25 0.0120483 0.598802 NRK
id 31018142 Brain AB42 33 Markers PC_0 ZDB-GENE-091113-25 0.0615554 3.61446 NRK
id 31018142 Brain PBS 35 Markers NN_0 ZDB-GENE-091113-25 0.0381336 1.92308 NRK
id 31018142 Brain AB42 33 Markers NN_1 ZDB-GENE-091113-25 0.114806 3.44828 NRK
id 31018142 Brain PBS 35 Markers PC_0 ZDB-GENE-091113-25 0.0627734 4.7619 NRK
id 31018142 Brain AB42 33 Markers PC_8 ZDB-GENE-091113-25 0.563574 28.5714 NRK
id 31018142 Brain PBS 35 Markers PC_5 ZDB-GENE-091113-25 0.226737 8.69565 NRK
id 31018142 Brain IL4 34 Markers NN_0 ZDB-GENE-091113-25 0.21777 2.85714 NRK
id 31018142 Brain IL4 34 Markers NN_4 ZDB-GENE-091113-25 0.260335 9.09091 NRK
id 31018142 Brain IL4 34 Markers PC_7 ZDB-GENE-091113-25 0.401123 10 NRK
id 31018142 Brain merged 32 Markers PC_6 ZDB-GENE-091113-25 0.0616927 4.16667 NRK
id 31018142 Brain AB42 33 Markers Im ZDB-GENE-091113-25 0.309599 9.52381 NRK
id 31018142 Brain merged 32 Markers NN_4 ZDB-GENE-091113-25 0.0958583 3.77358 NRK
id 31018142 Brain AB42 33 Markers NN_2 ZDB-GENE-091113-25 0.0261308 1.2987 NRK
id 31018142 Brain merged 32 Markers PC_1 ZDB-GENE-091113-25 0.0310494 1.84049 NRK
id 31018142 Brain AB42 33 Markers NN_6 ZDB-GENE-091113-25 0.255135 6.66667 NRK
id 31018142 Brain merged 32 Markers PC_2 ZDB-GENE-091113-25 0.0492027 3.18471 NRK
id 31018142 Brain merged 32 Markers PC_4 ZDB-GENE-091113-25 0.0262055 1.11111 NRK
id 31018142 Brain merged 32 Markers PC_0 ZDB-GENE-091113-25 0.0618863 3.79147 NRK
id 31018142 Brain AB42 33 Markers NN_0 ZDB-GENE-091113-25 0.335621 9.64912 NRK
id 31018142 Brain merged 32 Markers PC_3 ZDB-GENE-091113-25 0.0832943 2.89855 NRK
id 31018142 Brain AB42 33 Markers PC_5 ZDB-GENE-091113-25 0.0858362 5.88235 NRK