<-- Back To Summary
View As Dot Plot View Results as Heatmap
Gene:
  • ern1
  • 553551
  • ZDB-GENE-050522-431

Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq

datasets(53) Tissue Type: - PubMed Id: 29576475 - Treatment Condition : WT Species : Zebrafish

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

datasets(42) Tissue Type: - PubMed Id: 29608178 - Treatment Condition : WT Species : Zebrafish

Single-Cell Transcriptomics Analyses of Neural Stem Cell Heterogeneity and Contextual Plasticity in a Zebrafish Brain Model of Amyloid Toxicity

datasets(32,33,34,35) Tissue Type: - PubMed Id: 31018142 - Treatment Condition : IL-4 treated Species : Zebrafish

Single Cell Gene Data Details


Rows:67
id pubmed_id tissue type condition dataset ID dataset id cluster name cluster description Species specific geneid avg exp % exp gene symbol
id 29576475 Habenula all 53 Markers 16 ZDB-GENE-050522-431 0.0706081 2.11864 ERN1
id 29576475 Habenula all 53 Markers Hb06 ZDB-GENE-050522-431 0.107652 2.31788 ERN1
id 29576475 Habenula all 53 Markers Hb03 ZDB-GENE-050522-431 0.119471 3.01508 ERN1
id 29576475 Habenula all 53 Markers Hb07 ZDB-GENE-050522-431 0.13139 2.40964 ERN1
id 29576475 Habenula all 53 Markers Hb04 ZDB-GENE-050522-431 0.167644 3.22581 ERN1
id 29576475 Habenula all 53 Markers Hb14 ZDB-GENE-050522-431 0.186097 5.88235 ERN1
id 29576475 Habenula all 53 Markers Hb08 ZDB-GENE-050522-431 0.0908956 3.05344 ERN1
id 29576475 Habenula all 53 Markers Hb13 ZDB-GENE-050522-431 0.153652 4.0404 ERN1
id 29576475 Habenula all 53 Markers Hb10 ZDB-GENE-050522-431 0.0213533 0.961538 ERN1
id 29576475 Habenula all 53 Markers Hb12 ZDB-GENE-050522-431 0.175806 5.08475 ERN1
id 29576475 Habenula all 53 Markers Hb09 ZDB-GENE-050522-431 0.115742 4.20712 ERN1
id 29576475 Habenula all 53 Markers Hb05 ZDB-GENE-050522-431 0.0548066 1.24224 ERN1
id 29576475 Habenula all 53 Markers Hb01 ZDB-GENE-050522-431 0.196319 3.75458 ERN1
id 29576475 Habenula all 53 Markers Hb15 ZDB-GENE-050522-431 0.163663 3.22581 ERN1
id 29576475 Habenula all 53 Markers Hb11 ZDB-GENE-050522-431 0.167309 4.23729 ERN1
id 29576475 Habenula all 53 Markers Hb02 ZDB-GENE-050522-431 0.23877 5.38462 ERN1
id 29608178 Brain all 42 Markers tcf7I2+, barhl2+ neurons ZDB-GENE-050522-431 0.0538646 1.60058 ern1
id 29608178 Brain all 42 Markers rtn4rl2b+ pallium neurons ZDB-GENE-050522-431 0.0646925 2.20588 ern1
id 29608178 Brain all 42 Markers phox2+ hindbrain neurons ZDB-GENE-050522-431 0.0457287 1.47275 ern1
id 29608178 Brain all 42 Markers Progenitor cells ZDB-GENE-050522-431 0.034656 1.50762 ern1
id 29608178 Brain all 42 Markers Ventral forebrain neurons ZDB-GENE-050522-431 0.0521345 2.13126 ern1
id 29608178 Brain all 42 Markers Nascent forebrain neurons ZDB-GENE-050522-431 0.0609876 1.68697 ern1
id 29608178 Brain all 42 Markers bnc2+, onecut1+ neurons ZDB-GENE-050522-431 0.0198334 0.720906 ern1
id 29608178 Brain all 42 Markers GABAergic optic tectum neurons ZDB-GENE-050522-431 0.0465828 1.12391 ern1
id 29608178 Brain all 42 Markers Unclassified neurons ZDB-GENE-050522-431 0.0728198 2.03952 ern1
id 29608178 Brain all 42 Markers atf5b+ neurons ZDB-GENE-050522-431 0.0633772 1.4772 ern1
id 29608178 Brain all 42 Markers sst3+ neurons ZDB-GENE-050522-431 0.0508579 1.42653 ern1
id 29608178 Brain all 42 Markers GABAergic subpallium neurons ZDB-GENE-050522-431 0.082452 1.74497 ern1
id 29608178 Brain all 42 Markers penkb+ neurons ZDB-GENE-050522-431 0.0389337 1.38889 ern1
id 29608178 Brain all 42 Markers tfap2b+, barhl2+ midbrain neurons ZDB-GENE-050522-431 0.0389281 0.763359 ern1
id 29608178 Brain all 42 Markers Torus Longitudinalis neurons ZDB-GENE-050522-431 0.0498468 1.47222 ern1
id 29608178 Brain all 42 Markers fezf1+, otpa+ neurons ZDB-GENE-050522-431 0.0439715 1.55738 ern1
id 29608178 Brain all 42 Markers Granule cell neurons ZDB-GENE-050522-431 0.0532305 1.06807 ern1
id 29608178 Brain all 42 Markers GABAergic hindbrain neurons ZDB-GENE-050522-431 0.0450204 1.59915 ern1
id 29608178 Brain all 42 Markers rtn4rl2b+ eomesa+ pallium neurons ZDB-GENE-050522-431 0.0483749 2.71465 ern1
id 29608178 Brain all 42 Markers Radial glia cells (progenitors) ZDB-GENE-050522-431 0.0427437 1.46777 ern1
id 29608178 Brain all 42 Markers nefma+ glutamergic neurons (midbrain) ZDB-GENE-050522-431 0.064725 2.28162 ern1
id 29608178 Brain all 42 Markers hmx3a+, hmx2+ neurons ZDB-GENE-050522-431 0.0325476 1.01302 ern1
id 31018142 Brain merged 32 Markers PC_2 ZDB-GENE-050522-431 0.0128494 0.636943 ern1
id 31018142 Brain AB42 33 Markers Im ZDB-GENE-050522-431 0.448613 14.2857 ern1
id 31018142 Brain merged 32 Markers Im ZDB-GENE-050522-431 0.425763 10.6383 ern1
id 31018142 Brain AB42 33 Markers PC_6 ZDB-GENE-050522-431 0.0481584 2.77778 ern1
id 31018142 Brain merged 32 Markers NN_2 ZDB-GENE-050522-431 0.0145482 0.598802 ern1
id 31018142 Brain AB42 33 Markers PC_1 ZDB-GENE-050522-431 0.0358876 2.77778 ern1
id 31018142 Brain merged 32 Markers NN_3 ZDB-GENE-050522-431 0.0237857 1.19048 ern1
id 31018142 Brain AB42 33 Markers PC_4 ZDB-GENE-050522-431 0.0494648 2.94118 ern1
id 31018142 Brain merged 32 Markers OPC_OD_1 ZDB-GENE-050522-431 0.164577 2.5641 ern1
id 31018142 Brain IL4 34 Markers PC_2 ZDB-GENE-050522-431 0.0366791 1.81818 ern1
id 31018142 Brain merged 32 Markers PC_4 ZDB-GENE-050522-431 0.0954739 2.22222 ern1
id 31018142 Brain IL4 34 Markers Im ZDB-GENE-050522-431 0.379737 5.26316 ern1
id 31018142 Brain PBS 35 Markers NN_2 ZDB-GENE-050522-431 0.0418887 1.72414 ern1
id 31018142 Brain PBS 35 Markers PC_4 ZDB-GENE-050522-431 0.20942 3.0303 ern1
id 31018142 Brain merged 32 Markers NN_0 ZDB-GENE-050522-431 0.0215094 0.497512 ern1
id 31018142 Brain AB42 33 Markers PC_0 ZDB-GENE-050522-431 0.0339864 1.20482 ern1
id 31018142 Brain merged 32 Markers PC_0 ZDB-GENE-050522-431 0.056473 1.89573 ern1
id 31018142 Brain AB42 33 Markers PC_3 ZDB-GENE-050522-431 0.0354509 2.43902 ern1
id 31018142 Brain merged 32 Markers PC_3 ZDB-GENE-050522-431 0.0105325 0.724638 ern1
id 31018142 Brain AB42 33 Markers NN_3 ZDB-GENE-050522-431 0.0587648 2.94118 ern1
id 31018142 Brain merged 32 Markers PC_6 ZDB-GENE-050522-431 0.0361188 2.08333 ern1
id 31018142 Brain AB42 33 Markers PC_8 ZDB-GENE-050522-431 0.204052 14.2857 ern1
id 31018142 Brain merged 32 Markers PC_1 ZDB-GENE-050522-431 0.0158522 1.22699 ern1
id 31018142 Brain IL4 34 Markers OPC_OD_1 ZDB-GENE-050522-431 0.641849 10 ern1
id 31018142 Brain merged 32 Markers PC_8 ZDB-GENE-050522-431 0.0680175 4.7619 ern1
id 31018142 Brain IL4 34 Markers PC_0 ZDB-GENE-050522-431 0.149224 4.54545 ern1
id 31018142 Brain PBS 35 Markers NN_0 ZDB-GENE-050522-431 0.0831421 1.92308 ern1
id 31018142 Brain PBS 35 Markers PC_0 ZDB-GENE-050522-431 0.0301081 1.19048 ern1
id 31018142 Brain PBS 35 Markers Im ZDB-GENE-050522-431 0.482137 14.2857 ern1