DIOPT Ortholog Finder Help
Version Details
Version 8 Details
Version 9 Details
Using the text box option:
Gene and/or protein identifiers should be entered one per line.
Different types of identifiers can be entered together.
Example (fly genes):
Nmd3 lace FBgn0000339 FBgn0032679 CG5110 CG5861 par-1 wg
Using the file upload option:
Please upload a text file with one gene/protein per line.
Tutorial
How To Cite:
-
Hu Y, Comjean A, Rodiger J, Liu Y, Gao Y, Chung V, Zirin J, Perrimon N, Mohr SE. FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2021 update. Nucleic Acids Research 2021 Jan 8;
PubmedID: 33104800;
-
Hu Y, Flockhart I, Vinayagam A, Bergwitz C, Berger B, Perrimon N, Mohr SE. An integrative approach to ortholog prediction for disease-focused and other functional studies. BMC Bioinformatics. 2011 Aug 31 ;
PubmedID: 21880147;
DIOPT API
You can access diopt data through an API call. For details see: https://www.flyrnai.org/tools/diopt/web/api
Versions
- Version 9.0 - 2023-
- Finalized dataset
- 9.0 (beta) Sept 2021 -
- Revamped UI
- added 2 species: Mosquito (Anopheles gambiae) and E. coli
- added 2 sources of annotation (SGD and ECOCYC) and 2 prediction algorithms (sonicParanoid and Domainid)
- 8.5 August 2021 -
- Revamped UI
- 8.0- August 2019 -
- Updated Data Sources
- 7.1- March 2018 -
- User Feedback on missing relationships
- 7.0- Jan 2018 -
- Updated Data Sources
- added 3 new algorithms: OrthoFinder, OrthoInspector, Hieranoid as a sources
- added new species: Arabidopsis (Thale Cress)
- 6.0.3- Oct 2017 - bug fix to error where in some cases where report fails to generate if certain genes are input
- 6.0.2- June 2017 - fix the ID mapping issue of worm genes to include worm gene related eggNOG predictions
- 6.0.1- Jan 2017 - fixed links to pombebase, column header
- 6.0- Dec 2016 -
- Updated Data Sources
- added eggNOG as a source
- Added paralogs
- 5.5- Oct 2016 - Added multi-sequence alignment from target "All" heatmap
- 5.4- Sept 2016 - Added target species "All" and new filter
- 5.3- May 2016 - Added more prediction tools (Panther, HGNC and ZFIN)
- 5.2.1- April 2016 - Added orthologous rank
- High: best score both ways AND DIOPT score >=2
- Moderate:
- (best score forward or reverse) AND DIOPT score >=2
- DIOPT score >=4
- Low: all others
- 5.2- April 2016 - Added New Species (Rattus norvegicus)
- 5.1.1 - December 2015 - Added Best forward and reverse columns
- 5.1 - November 2015 - Upgraded gene matching algorithm
- 5.0 - November 2015 - Upgraded data sources to version 5