Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: wk18
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75 | 15 | PTA | Pretubular aggregate | wk18 | HMGB2 | 3148 | 5000 | 1.65 | 0.99 | 0.41 | 4.0384039068886E-95 | 1.3606998123871E-90 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | HIST1H4C | 8364 | 4787 | 1.48 | 0.73 | 0.17 | 2.4065528871752E-72 | 8.1086392980481E-68 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | TUBA1B | 10376 | 18809 | 1.43 | 1 | 0.81 | 1.0274434168989E-80 | 3.461867848899E-76 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | UBE2C | 11065 | 15937 | 1.43 | 0.76 | 0.06 | 3.3747616210784E-173 | 1.1370921806062E-168 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | TOP2A | 7153 | 11989 | 1.36 | 0.8 | 0.07 | 7.3456815832309E-183 | 2.4750539526538E-178 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | PCLAF | 9768 | 28961 | 1.33 | 0.94 | 0.17 | 1.8038487700971E-121 | 6.0778880459652E-117 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | MAD2L1 | 4085 | 6763 | 1.32 | 0.95 | 0.14 | 3.4870231532766E-162 | 1.174917581265E-157 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | PTTG1 | 9232 | 9690 | 1.31 | 0.85 | 0.16 | 2.4267061238401E-109 | 8.176543613667E-105 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | NUSAP1 | 51203 | 18538 | 1.31 | 0.92 | 0.08 | 3.8717376160135E-201 | 1.3045432723396E-196 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | H2AFZ | 3015 | 4741 | 1.3 | 1 | 0.76 | 5.6432411874646E-81 | 1.9014336857043E-76 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CCND1 | 595 | 1582 | 1.26 | 0.82 | 0.3 | 1.8074636863284E-57 | 6.090068144715E-53 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CENPF | 1063 | 1857 | 1.25 | 0.74 | 0.06 | 9.8148727204768E-175 | 3.3070232144374E-170 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | TYMS | 7298 | 12441 | 1.23 | 0.86 | 0.13 | 2.4491816597305E-127 | 8.2522726842959E-123 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | BIRC5 | 332 | 593 | 1.2 | 0.81 | 0.05 | 3.3875741082368E-209 | 1.1414092200293E-204 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | TK1 | 7083 | 11830 | 1.09 | 0.84 | 0.07 | 2.9110649287151E-176 | 9.8085421708127E-172 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | HMGA1 | 3159 | 5010 | 1.06 | 0.96 | 0.33 | 1.0823069205613E-72 | 3.6467249381393E-68 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CCNB1 | 891 | 1579 | 1.06 | 0.66 | 0.08 | 4.6616517350557E-113 | 1.5706969356097E-108 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | MCM7 | 4176 | 6950 | 1.05 | 0.96 | 0.25 | 1.4587172012212E-87 | 4.9150017377946E-83 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | AURKB | 9212 | 11390 | 1.05 | 0.73 | 0.04 | 1.1444582762855E-205 | 3.8561377161164E-201 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | PBK | 55872 | 18282 | 1.05 | 0.8 | 0.04 | 3.567174526094E-235 | 1.2019237848221E-230 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | SMC4 | 10051 | 14013 | 1.04 | 0.89 | 0.19 | 5.4191252783848E-100 | 1.825920071299E-95 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | UBE2T | 29089 | 25009 | 1.02 | 0.81 | 0.08 | 4.9972117026658E-157 | 1.6837605110962E-152 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CCNB2 | 9133 | 1580 | 1.01 | 0.63 | 0.06 | 1.6812667897999E-117 | 5.6648603215517E-113 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | RANBP1 | 5902 | 9847 | 1.01 | 1 | 0.59 | 4.0853978187517E-66 | 1.3765339410502E-61 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | PCNA | 5111 | 8729 | 1.01 | 0.84 | 0.25 | 4.3681591363905E-61 | 1.4718075394154E-56 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CDK1 | 983 | 1722 | 1.01 | 0.73 | 0.06 | 4.7308547419935E-156 | 1.5940141967673E-151 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | TMSB15A | 11013 | 30744 | 1.01 | 0.92 | 0.21 | 7.1306084787454E-92 | 2.4025872208285E-87 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | HMGB1 | 3146 | 4983 | 1.01 | 1 | 0.94 | 1.5243072798543E-75 | 5.1360009487412E-71 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | TUBB | 203068 | 20778 | 1 | 1 | 0.9 | 3.973115480354E-67 | 1.3387015299505E-62 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CKS1B | 1163 | 19083 | 1 | 0.89 | 0.31 | 2.2346352887583E-65 | 7.5293801419421E-61 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | LMNB1 | 4001 | 6637 | 0.99 | 0.88 | 0.16 | 2.3154197178806E-113 | 7.8015751974268E-109 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | ZWINT | 11130 | 13195 | 0.96 | 0.84 | 0.11 | 1.7137138584196E-136 | 5.774187474559E-132 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CDC20 | 991 | 1723 | 0.95 | 0.57 | 0.05 | 5.6831719493285E-113 | 1.9148879566067E-108 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | MKI67 | 4288 | 7107 | 0.9 | 0.69 | 0.05 | 1.4847434368981E-167 | 5.0026945362845E-163 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CKS2 | 1164 | 2000 | 0.9 | 0.87 | 0.35 | 6.3254655678011E-43 | 2.1313023684149E-38 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CALCA | 796 | 1437 | 0.89 | 0.53 | 0.06 | 3.0210628127687E-94 | 1.0179169041343E-89 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | RRM2 | 6241 | 10452 | 0.89 | 0.69 | 0.04 | 8.2830456107586E-172 | 2.790889388089E-167 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CENPV | 201161 | 29920 | 0.87 | 0.92 | 0.3 | 9.6628284358274E-63 | 3.2557934131677E-58 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | LYPD1 | 116372 | 28431 | 0.85 | 0.8 | 0.24 | 4.2454394902561E-50 | 1.4304583818469E-45 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | ANP32E | 81611 | 16673 | 0.85 | 0.87 | 0.24 | 1.0195670644823E-69 | 3.4353292670665E-65 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | H2AFX | 3014 | 4739 | 0.85 | 0.7 | 0.17 | 1.3431169004064E-58 | 4.5254980842294E-54 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | HMGN2 | 3151 | 4986 | 0.85 | 0.99 | 0.91 | 2.3946697440816E-57 | 8.0686002357085E-53 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | H2AFY | 9555 | 4740 | 0.85 | 0.97 | 0.51 | 7.1039782147555E-57 | 2.3936144196797E-52 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | LHX1 | 3975 | 6593 | 0.85 | 0.77 | 0.21 | 3.2899951103794E-56 | 1.1085309524912E-51 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | PIMREG | 54478 | 25483 | 0.84 | 0.62 | 0.05 | 4.115586695531E-146 | 1.3867057811922E-141 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | UHRF1 | 29128 | 12556 | 0.84 | 0.66 | 0.11 | 3.9757305298347E-80 | 1.3395826447225E-75 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CENPM | 79019 | 18352 | 0.83 | 0.75 | 0.05 | 3.8820569894803E-188 | 1.3080202820355E-183 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | TPX2 | 22974 | 1249 | 0.83 | 0.53 | 0.05 | 8.8351881902036E-110 | 2.9769283088072E-105 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | FEN1 | 2237 | 3650 | 0.82 | 0.75 | 0.13 | 1.4494582166155E-91 | 4.8838045150644E-87 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | STMN1 | 3925 | 6510 | 0.8 | 1 | 0.94 | 4.5724233054536E-65 | 1.5406323085396E-60 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | HMGB3 | 3149 | 5004 | 0.8 | 0.85 | 0.24 | 1.7319439486011E-61 | 5.8356119404164E-57 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | PRC1 | 9055 | 9341 | 0.8 | 0.68 | 0.07 | 1.1693399219696E-118 | 3.9399739330842E-114 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | HEY1 | 23462 | 4880 | 0.8 | 0.78 | 0.27 | 1.0112155753224E-40 | 3.4071897594913E-36 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | TUBB2B | 347733 | 30829 | 0.79 | 0.62 | 0.21 | 4.2197761633852E-34 | 1.421811380491E-29 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | PLK1 | 5347 | 9077 | 0.79 | 0.44 | 0.02 | 2.721853576518E-129 | 9.1710134407199E-125 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | DEK | 7913 | 2768 | 0.78 | 0.96 | 0.55 | 6.3005516307207E-49 | 2.122907866455E-44 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | MCM3 | 4172 | 6945 | 0.77 | 0.75 | 0.23 | 2.9863382690881E-46 | 1.0062168163866E-41 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CCNA2 | 890 | 1578 | 0.77 | 0.57 | 0.04 | 2.1035313368881E-131 | 7.0876384865106E-127 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | NUF2 | 83540 | 14621 | 0.76 | 0.63 | 0.03 | 1.659612197031E-175 | 5.5918973366763E-171 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | PHGDH | 26227 | 8923 | 0.75 | 0.89 | 0.32 | 3.9485456428935E-47 | 1.3304229689165E-42 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | ASF1B | 55723 | 20996 | 0.75 | 0.67 | 0.04 | 2.5909450721685E-172 | 8.7299303261645E-168 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | JAG1 | 182 | 6188 | 0.74 | 0.84 | 0.26 | 4.867080880803E-52 | 1.6399142319778E-47 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | SGO1 | 151648 | 25088 | 0.74 | 0.66 | 0.04 | 2.1941360279161E-183 | 7.3929219324607E-179 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | DTYMK | 1841 | 3061 | 0.73 | 0.84 | 0.21 | 9.3648326611855E-71 | 3.1553867168598E-66 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | RNASEH2A | 10535 | 18518 | 0.73 | 0.73 | 0.12 | 7.0714792946712E-93 | 2.3826642335465E-88 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | EZH2 | 2146 | 3527 | 0.73 | 0.72 | 0.12 | 2.6281490334515E-91 | 8.8552853533116E-87 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | IDH2 | 3418 | 5383 | 0.73 | 0.91 | 0.3 | 1.5320708133455E-51 | 5.1621593984863E-47 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | RAN | 5901 | 9846 | 0.73 | 0.98 | 0.79 | 9.2154360923525E-56 | 3.1050490369573E-51 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | SFRP2 | 6423 | 10777 | 0.73 | 0.45 | 0.06 | 8.4189661373903E-65 | 2.8366864503323E-60 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | NASP | 4678 | 7644 | 0.72 | 0.92 | 0.41 | 1.4830979559139E-38 | 4.9971502526562E-34 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | TMPO | 7112 | 11875 | 0.72 | 0.82 | 0.23 | 8.0221374860943E-58 | 2.7029790045646E-53 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | GINS2 | 51659 | 24575 | 0.72 | 0.66 | 0.12 | 7.5498473421612E-67 | 2.5438455634678E-62 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | GTSE1 | 51512 | 13698 | 0.71 | 0.53 | 0.04 | 2.5038019574549E-126 | 8.4363103154485E-122 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CDCA3 | 83461 | 14624 | 0.71 | 0.55 | 0.03 | 5.4140841240312E-164 | 1.8242215047511E-159 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | TACC3 | 10460 | 11524 | 0.71 | 0.64 | 0.05 | 3.1894868993589E-150 | 1.07466571587E-145 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | KRT18 | 3875 | 6430 | 0.71 | 0.81 | 0.32 | 7.175036248286E-33 | 2.4175567134975E-28 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CD24 | 100133941 | 1645 | 0.71 | 0.95 | 0.42 | 1.406721265379E-35 | 4.739806631568E-31 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | PARP1 | 142 | 270 | 0.71 | 0.9 | 0.37 | 5.928929122843E-38 | 1.9976933786507E-33 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | HNRNPAB | 3182 | 5034 | 0.7 | 0.94 | 0.37 | 3.2571941264034E-46 | 1.0974789889504E-41 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | DUT | 1854 | 3078 | 0.7 | 0.92 | 0.57 | 1.8374132104299E-25 | 6.1909800712227E-21 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CENPU | 79682 | 21348 | 0.69 | 0.67 | 0.07 | 5.3018615859954E-117 | 1.7864092427853E-112 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | UBE2S | 27338 | 17895 | 0.69 | 0.71 | 0.23 | 4.8122179722252E-39 | 1.6214287235616E-34 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | JPT1 | 51155 | 14569 | 0.69 | 0.79 | 0.33 | 1.7972085133779E-30 | 6.0555143649755E-26 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CDCA5 | 113130 | 14626 | 0.68 | 0.61 | 0.04 | 1.1957843707253E-148 | 4.0290758587219E-144 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | TMEM97 | 27346 | 28106 | 0.68 | 0.78 | 0.19 | 2.3256429018295E-63 | 7.8360211934242E-59 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | GGH | 8836 | 4248 | 0.68 | 0.8 | 0.19 | 3.4086519753881E-65 | 1.1485111965873E-60 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | PAX8 | 7849 | 8622 | 0.68 | 0.94 | 0.4 | 1.8158250931732E-40 | 6.1182410689376E-36 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | BEX1 | 55859 | 1036 | 0.68 | 0.84 | 0.32 | 2.7386274024006E-38 | 9.2275311696486E-34 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | TUBA1C | 84790 | 20768 | 0.67 | 0.62 | 0.16 | 2.205194995775E-45 | 7.4301840187644E-41 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | LSM4 | 25804 | 17259 | 0.67 | 0.94 | 0.46 | 3.7779738000097E-42 | 1.2729504921753E-37 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CDCA4 | 55038 | 14625 | 0.67 | 0.69 | 0.1 | 2.5558634241519E-86 | 8.6117262213374E-82 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | RRM1 | 6240 | 10451 | 0.66 | 0.71 | 0.15 | 2.4864975593109E-63 | 8.3780048763423E-59 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CDT1 | 81620 | 24576 | 0.66 | 0.6 | 0.08 | 8.0314849282127E-86 | 2.706128531712E-81 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | KIF22 | 3835 | 6391 | 0.66 | 0.74 | 0.16 | 1.066839686303E-64 | 3.5946096390293E-60 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | SMC2 | 10592 | 14011 | 0.65 | 0.77 | 0.15 | 1.4027064355177E-75 | 4.7262790638332E-71 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | DHFR | 1719 | 2861 | 0.65 | 0.63 | 0.1 | 2.450795865953E-80 | 8.2577115907421E-76 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CLSPN | 63967 | 19715 | 0.65 | 0.54 | 0.06 | 1.1482363547638E-96 | 3.868867573741E-92 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | DNAJC9 | 23234 | 19123 | 0.65 | 0.72 | 0.18 | 9.290494996351E-56 | 3.1303393840705E-51 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | CENPA | 1058 | 1851 | 0.64 | 0.41 | 0.02 | 1.3362073832754E-102 | 4.502217157208E-98 |
| 75 | 15 | PTA | Pretubular aggregate | wk18 | SPC25 | 57405 | 24031 | 0.64 | 0.52 | 0.03 | 1.8497733062659E-145 | 6.2326261781325E-141 |