Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: wk18
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
75 | 13 | Pod | Podocyte | wk18 | PODXL | 5420 | 9171 | 2.49 | 0.99 | 0.25 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | AIF1 | 199 | 352 | 2.34 | 0.9 | 0.08 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | THSD7A | 221981 | 22207 | 2.34 | 0.94 | 0.14 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | CLIC5 | 53405 | 13517 | 2.32 | 0.95 | 0.15 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | NPHS2 | 7827 | 13394 | 2.31 | 0.97 | 0.13 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | TPPP3 | 51673 | 24162 | 2.24 | 0.94 | 0.15 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | MME | 4311 | 7154 | 2.22 | 0.93 | 0.12 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | PTPRO | 5800 | 9678 | 2.07 | 0.9 | 0.11 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | SOST | 50964 | 13771 | 2.01 | 0.92 | 0.15 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | S100A6 | 6277 | 10496 | 1.92 | 0.95 | 0.31 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | MYL9 | 10398 | 15754 | 1.85 | 0.98 | 0.43 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | MPP5 | 64398 | 18669 | 1.83 | 0.85 | 0.18 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | PDLIM2 | 64236 | 13992 | 1.75 | 0.87 | 0.22 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | MXRA8 | 54587 | 7542 | 1.74 | 0.97 | 0.39 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | PTH1R | 5745 | 9608 | 1.7 | 0.73 | 0.09 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | CXCL12 | 6387 | 10672 | 1.7 | 0.77 | 0.26 | 2.13453351344287e-239 | 7.19209722019439e-235 |
75 | 13 | Pod | Podocyte | wk18 | MAFB | 9935 | 6408 | 1.68 | 0.99 | 0.35 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | ST6GALNAC3 | 256435 | 19343 | 1.66 | 0.74 | 0.07 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | NES | 10763 | 7756 | 1.66 | 0.89 | 0.22 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | DDN | 23109 | 24458 | 1.65 | 0.61 | 0.01 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | ST3GAL6 | 10402 | 18080 | 1.61 | 0.73 | 0.08 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | ANXA2 | 302 | 537 | 1.61 | 0.97 | 0.49 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | TNNI1 | 7135 | 11945 | 1.57 | 0.7 | 0.17 | 1.21812312637703e-222 | 4.10434406201476e-218 |
75 | 13 | Pod | Podocyte | wk18 | SPOCK2 | 9806 | 13564 | 1.57 | 0.82 | 0.24 | 4.28334308823943e-302 | 1.44322962015139e-297 |
75 | 13 | Pod | Podocyte | wk18 | SEMA3B | 7869 | 10724 | 1.54 | 0.83 | 0.22 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | MRGPRF | 116535 | 24828 | 1.51 | 0.62 | 0.04 | 1.98569484224417e-285 | 6.6906002014575e-281 |
75 | 13 | Pod | Podocyte | wk18 | CRB2 | 286204 | 18688 | 1.47 | 0.72 | 0.22 | 4.50734026431294e-215 | 1.5187032286576e-210 |
75 | 13 | Pod | Podocyte | wk18 | ARMH4 | 145407 | 19846 | 1.45 | 0.67 | 0.14 | 6.81871055827047e-247 | 2.29749633550365e-242 |
75 | 13 | Pod | Podocyte | wk18 | TGFBR3 | 7049 | 11774 | 1.45 | 0.68 | 0.1 | 9.83745348515156e-277 | 3.31463157728697e-272 |
75 | 13 | Pod | Podocyte | wk18 | BST2 | 684 | 1119 | 1.44 | 0.93 | 0.41 | 5.6045835623343e-274 | 1.88840838549292e-269 |
75 | 13 | Pod | Podocyte | wk18 | TNNT2 | 7139 | 11949 | 1.41 | 0.59 | 0.11 | 6.65649797403146e-202 | 2.24284042737016e-197 |
75 | 13 | Pod | Podocyte | wk18 | RIPOR1 | 79567 | 25836 | 1.41 | 0.68 | 0.1 | 7.0960824266568e-270 | 2.39095401283774e-265 |
75 | 13 | Pod | Podocyte | wk18 | VASN | 114990 | 18517 | 1.39 | 0.81 | 0.27 | 6.59813333278174e-269 | 2.22317504514748e-264 |
75 | 13 | Pod | Podocyte | wk18 | GSN | 2934 | 4620 | 1.35 | 0.72 | 0.16 | 1.37929859929198e-253 | 4.6474087004544e-249 |
75 | 13 | Pod | Podocyte | wk18 | SPARC | 6678 | 11219 | 1.35 | 0.99 | 0.74 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | CPXM1 | 56265 | 15771 | 1.35 | 0.86 | 0.49 | 8.95199108982796e-236 | 3.01628387780663e-231 |
75 | 13 | Pod | Podocyte | wk18 | SHISA2 | 387914 | 20366 | 1.33 | 0.67 | 0.23 | 8.52212537526519e-176 | 2.87144492394185e-171 |
75 | 13 | Pod | Podocyte | wk18 | SPINT2 | 10653 | 11247 | 1.33 | 0.97 | 0.57 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | PLTP | 5360 | 9093 | 1.31 | 0.61 | 0.16 | 3.77321171868011e-186 | 1.27134595649207e-181 |
75 | 13 | Pod | Podocyte | wk18 | KLRB1 | 3820 | 6373 | 1.31 | 0.54 | 0.04 | 1.13764207503856e-226 | 3.83317120763493e-222 |
75 | 13 | Pod | Podocyte | wk18 | TUBB2A | 7280 | 12412 | 1.3 | 0.67 | 0.23 | 5.05597856529657e-185 | 1.70356141779103e-180 |
75 | 13 | Pod | Podocyte | wk18 | WT1 | 7490 | 12796 | 1.3 | 0.98 | 0.55 | 8.13568184019658e-307 | 2.74123663923583e-302 |
75 | 13 | Pod | Podocyte | wk18 | NPHS1 | 4868 | 7908 | 1.3 | 0.74 | 0.17 | 2.0760337073193e-255 | 6.99498797344166e-251 |
75 | 13 | Pod | Podocyte | wk18 | GADD45A | 1647 | 4095 | 1.3 | 0.85 | 0.41 | 6.84650113193667e-241 | 2.30686009139474e-236 |
75 | 13 | Pod | Podocyte | wk18 | ACTN4 | 81 | 166 | 1.29 | 0.83 | 0.45 | 3.68245606166172e-231 | 1.2407667454163e-226 |
75 | 13 | Pod | Podocyte | wk18 | PLA2R1 | 22925 | 9042 | 1.29 | 0.49 | 0.04 | 3.11747489992373e-202 | 1.0504019927803e-197 |
75 | 13 | Pod | Podocyte | wk18 | TCF21 | 6943 | 11632 | 1.28 | 0.95 | 0.38 | 1.31551988019733e-274 | 4.43251268433688e-270 |
75 | 13 | Pod | Podocyte | wk18 | COL4A4 | 1286 | 2206 | 1.27 | 0.53 | 0.02 | 1.43564492094371e-241 | 4.83726199662773e-237 |
75 | 13 | Pod | Podocyte | wk18 | SRGAP1 | 57522 | 17382 | 1.26 | 0.75 | 0.26 | 1.53601864337046e-225 | 5.17546121697244e-221 |
75 | 13 | Pod | Podocyte | wk18 | ENPEP | 2028 | 3355 | 1.25 | 0.69 | 0.18 | 1.07327519072313e-211 | 3.6162934276225e-207 |
75 | 13 | Pod | Podocyte | wk18 | LTBP4 | 8425 | 6717 | 1.25 | 0.8 | 0.32 | 1.30358712165538e-221 | 4.39230644770565e-217 |
75 | 13 | Pod | Podocyte | wk18 | TYRO3 | 7301 | 12446 | 1.25 | 0.62 | 0.16 | 4.02280251935829e-191 | 1.35544308087258e-186 |
75 | 13 | Pod | Podocyte | wk18 | TJP1 | 7082 | 11827 | 1.22 | 0.75 | 0.28 | 4.64141568872868e-215 | 1.56387860216024e-210 |
75 | 13 | Pod | Podocyte | wk18 | RETREG1 | 54463 | 25964 | 1.21 | 0.59 | 0.09 | 1.02574922531508e-218 | 3.45615943977664e-214 |
75 | 13 | Pod | Podocyte | wk18 | SELENOP | 6414 | 10751 | 1.2 | 0.95 | 0.6 | 2.03746057548091e-273 | 6.86501966302539e-269 |
75 | 13 | Pod | Podocyte | wk18 | NTNG1 | 22854 | 23319 | 1.2 | 0.46 | 0.01 | 9.01471661151528e-218 | 3.03741861508396e-213 |
75 | 13 | Pod | Podocyte | wk18 | LOX | 4015 | 6664 | 1.19 | 0.49 | 0.04 | 2.39592172175409e-200 | 8.07281864927822e-196 |
75 | 13 | Pod | Podocyte | wk18 | ARHGEF3 | 50650 | 683 | 1.16 | 0.58 | 0.1 | 9.66744391251974e-195 | 3.2573485518844e-190 |
75 | 13 | Pod | Podocyte | wk18 | CLDN5 | 7122 | 2047 | 1.16 | 0.75 | 0.21 | 3.15022642778885e-208 | 1.06143729257917e-203 |
75 | 13 | Pod | Podocyte | wk18 | VAMP2 | 6844 | 12643 | 1.16 | 0.89 | 0.53 | 1.38287892004714e-240 | 4.65947223320683e-236 |
75 | 13 | Pod | Podocyte | wk18 | HTRA1 | 5654 | 9476 | 1.16 | 0.5 | 0.05 | 8.89646473633616e-192 | 2.99757482826111e-187 |
75 | 13 | Pod | Podocyte | wk18 | SYNPO | 11346 | 30672 | 1.13 | 0.54 | 0.09 | 5.72873182633006e-191 | 1.93023890156365e-186 |
75 | 13 | Pod | Podocyte | wk18 | NPNT | 255743 | 27405 | 1.11 | 0.5 | 0.08 | 6.85267092288836e-167 | 2.308938940758e-162 |
75 | 13 | Pod | Podocyte | wk18 | IQGAP2 | 10788 | 6111 | 1.1 | 0.55 | 0.12 | 1.95389860503528e-170 | 6.58346595980587e-166 |
75 | 13 | Pod | Podocyte | wk18 | MAL2 | 114569 | 13634 | 1.08 | 0.47 | 0.11 | 4.17831751981431e-133 | 1.40784230512623e-128 |
75 | 13 | Pod | Podocyte | wk18 | SNCA | 6622 | 11138 | 1.08 | 0.64 | 0.23 | 1.16119574534716e-158 | 3.91253294437272e-154 |
75 | 13 | Pod | Podocyte | wk18 | DNAJB4 | 11080 | 14886 | 1.08 | 0.69 | 0.31 | 4.81652933618888e-147 | 1.62288139453548e-142 |
75 | 13 | Pod | Podocyte | wk18 | LOXL1 | 4016 | 6665 | 1.08 | 0.7 | 0.26 | 2.85365441910669e-166 | 9.61510319973807e-162 |
75 | 13 | Pod | Podocyte | wk18 | CITED2 | 10370 | 1987 | 1.05 | 0.93 | 0.71 | 1.83993396423834e-172 | 6.19947349910465e-168 |
75 | 13 | Pod | Podocyte | wk18 | PLCE1 | 51196 | 17175 | 1.05 | 0.47 | 0.08 | 7.92513771750718e-158 | 2.67029590253687e-153 |
75 | 13 | Pod | Podocyte | wk18 | AIF1L | 83543 | 28904 | 1.05 | 0.85 | 0.48 | 1.26875429079153e-197 | 4.27494070739297e-193 |
75 | 13 | Pod | Podocyte | wk18 | NDRG2 | 57447 | 14460 | 1.05 | 0.58 | 0.24 | 3.47944941616177e-129 | 1.17236568628155e-124 |
75 | 13 | Pod | Podocyte | wk18 | DUSP1 | 1843 | 3064 | 1.03 | 0.81 | 0.54 | 4.65211526438838e-125 | 1.56748371718302e-120 |
75 | 13 | Pod | Podocyte | wk18 | MYH9 | 4627 | 7579 | 1.03 | 0.65 | 0.28 | 6.72426061174052e-145 | 2.26567237051985e-140 |
75 | 13 | Pod | Podocyte | wk18 | TMSB4X | 7114 | 11881 | 1.03 | 1 | 0.99 | 2.84024948461733e-295 | 9.56993661346963e-291 |
75 | 13 | Pod | Podocyte | wk18 | PC | 5091 | 8636 | 1.02 | 0.46 | 0.07 | 6.79209667180772e-156 | 2.28852905259889e-151 |
75 | 13 | Pod | Podocyte | wk18 | P3H2 | 55214 | 19317 | 1.02 | 0.61 | 0.18 | 3.0147776901552e-159 | 1.01579919492089e-154 |
75 | 13 | Pod | Podocyte | wk18 | NEAT1 | 283131 | 30815 | 1 | 0.73 | 0.37 | 4.90312038339542e-141 | 1.65205738198125e-136 |
75 | 13 | Pod | Podocyte | wk18 | FGF1 | 2246 | 3665 | 1 | 0.36 | 0.005 | 1.32759909757774e-168 | 4.47321239937842e-164 |
75 | 13 | Pod | Podocyte | wk18 | NECTIN2 | 5819 | 9707 | 1 | 0.88 | 0.56 | 2.50740674809634e-197 | 8.44845629703582e-193 |
75 | 13 | Pod | Podocyte | wk18 | TSC22D3 | 1831 | 3051 | 1 | 0.81 | 0.46 | 1.20874461536419e-166 | 4.0727441070081e-162 |
75 | 13 | Pod | Podocyte | wk18 | CSRP1 | 1465 | 2469 | 0.99 | 0.57 | 0.22 | 2.62720445007059e-112 | 8.85210267406785e-108 |
75 | 13 | Pod | Podocyte | wk18 | VIM | 7431 | 12692 | 0.98 | 0.99 | 0.79 | 6.90574820251812e-230 | 2.32682279935646e-225 |
75 | 13 | Pod | Podocyte | wk18 | CD151 | 977 | 1630 | 0.98 | 0.79 | 0.47 | 2.42973337191754e-168 | 8.18674362333897e-164 |
75 | 13 | Pod | Podocyte | wk18 | DUSP23 | 54935 | 21480 | 0.97 | 0.52 | 0.2 | 1.68556405133659e-109 | 5.67933951457351e-105 |
75 | 13 | Pod | Podocyte | wk18 | PLD3 | 23646 | 17158 | 0.97 | 0.78 | 0.5 | 3.77551269552203e-146 | 1.27212124762919e-141 |
75 | 13 | Pod | Podocyte | wk18 | VEGFA | 7422 | 12680 | 0.97 | 0.51 | 0.14 | 1.0946615254692e-130 | 3.68835254391594e-126 |
75 | 13 | Pod | Podocyte | wk18 | COMT | 1312 | 2228 | 0.96 | 0.71 | 0.36 | 1.88897684730743e-153 | 6.36471858931767e-149 |
75 | 13 | Pod | Podocyte | wk18 | AXL | 558 | 905 | 0.96 | 0.42 | 0.14 | 1.31563958793894e-84 | 4.43291602760145e-80 |
75 | 13 | Pod | Podocyte | wk18 | PLS3 | 5358 | 9091 | 0.96 | 0.49 | 0.15 | 8.697695439249e-107 | 2.93060150130056e-102 |
75 | 13 | Pod | Podocyte | wk18 | ITM2B | 9445 | 6174 | 0.95 | 0.99 | 0.94 | 2.73725138992271e-219 | 9.22289483320559e-215 |
75 | 13 | Pod | Podocyte | wk18 | CTSD | 1509 | 2529 | 0.94 | 0.77 | 0.49 | 9.51078927380152e-154 | 3.20456533791469e-149 |
75 | 13 | Pod | Podocyte | wk18 | MALAT1 | 378938 | 29665 | 0.93 | 1 | 0.99 | 0 | 0 |
75 | 13 | Pod | Podocyte | wk18 | WT1-AS | 51352 | 18135 | 0.91 | 0.67 | 0.3 | 9.84443160131055e-135 | 3.31698278374558e-130 |
75 | 13 | Pod | Podocyte | wk18 | ITGA3 | 3675 | 6139 | 0.9 | 0.44 | 0.11 | 2.29792818906392e-115 | 7.74263924023199e-111 |
75 | 13 | Pod | Podocyte | wk18 | NEBL | 10529 | 16932 | 0.9 | 0.45 | 0.09 | 1.4853301223771e-131 | 5.0046713143374e-127 |
75 | 13 | Pod | Podocyte | wk18 | INSIG1 | 3638 | 6083 | 0.89 | 0.5 | 0.23 | 7.17378704698488e-76 | 2.41713580761108e-71 |
75 | 13 | Pod | Podocyte | wk18 | SRGAP2C | 653464 | 30584 | 0.89 | 0.44 | 0.09 | 6.65277590410791e-129 | 2.24158631313012e-124 |
75 | 13 | Pod | Podocyte | wk18 | DACH1 | 1602 | 2663 | 0.89 | 0.67 | 0.33 | 1.44088029310464e-128 | 4.85490205958676e-124 |
75 | 13 | Pod | Podocyte | wk18 | SEPTIN11 | 55752 | 25589 | 0.88 | 0.85 | 0.57 | 1.36230944578745e-170 | 4.59016544663624e-166 |