Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: wk16
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
74 | 8 | Mes | Mesangial cells | wk16 | REN | 5972 | 9958 | 5.23 | 0.37 | 0.01 | 1.42196317636039e-78 | 4.79116272642871e-74 |
74 | 8 | Mes | Mesangial cells | wk16 | ACTA2 | 59 | 130 | 2.38 | 0.56 | 0.11 | 1.06201478964547e-21 | 3.57835263223143e-17 |
74 | 8 | Mes | Mesangial cells | wk16 | MEF2C | 4208 | 6996 | 2.15 | 0.73 | 0.06 | 3.76754468937491e-60 | 1.26943650763798e-55 |
74 | 8 | Mes | Mesangial cells | wk16 | MGP | 4256 | 7060 | 1.93 | 0.56 | 0.03 | 7.64919745545917e-62 | 2.57732059064241e-57 |
74 | 8 | Mes | Mesangial cells | wk16 | ADIRF | 10974 | 24043 | 1.78 | 0.32 | 0.02 | 3.45900092427996e-30 | 1.16547577142689e-25 |
74 | 8 | Mes | Mesangial cells | wk16 | FRZB | 2487 | 3959 | 1.7 | 0.51 | 0.05 | 4.96445701664241e-36 | 1.67272414718749e-31 |
74 | 8 | Mes | Mesangial cells | wk16 | TINAGL1 | 64129 | 19168 | 1.69 | 0.56 | 0.07 | 3.09841828541539e-31 | 1.04398105708786e-26 |
74 | 8 | Mes | Mesangial cells | wk16 | GNAS | 2778 | 4392 | 1.68 | 0.86 | 0.66 | 2.0720354170078e-12 | 6.98151613406609e-08 |
74 | 8 | Mes | Mesangial cells | wk16 | ANGPT2 | 285 | 485 | 1.61 | 0.54 | 0.04 | 6.14548494990912e-48 | 2.07065969902238e-43 |
74 | 8 | Mes | Mesangial cells | wk16 | NDUFA4L2 | 56901 | 29836 | 1.61 | 0.48 | 0.01 | 5.32955488259844e-93 | 1.79574022214272e-88 |
74 | 8 | Mes | Mesangial cells | wk16 | SERPINI1 | 5274 | 8943 | 1.55 | 0.48 | 0.03 | 1.91696462950073e-57 | 6.45902062263975e-53 |
74 | 8 | Mes | Mesangial cells | wk16 | TPM2 | 7169 | 12011 | 1.46 | 0.78 | 0.28 | 5.99763357069225e-17 | 2.02084265530905e-12 |
74 | 8 | Mes | Mesangial cells | wk16 | RERGL | 79785 | 26213 | 1.39 | 0.32 | 0.004 | 1.02159100264005e-158 | 3.44214872429538e-154 |
74 | 8 | Mes | Mesangial cells | wk16 | ISYNA1 | 51477 | 29821 | 1.32 | 0.62 | 0.3 | 1.61918455661263e-09 | 5.45568044505059e-05 |
74 | 8 | Mes | Mesangial cells | wk16 | PDGFRB | 5159 | 8804 | 1.29 | 0.59 | 0.09 | 3.2887826652161e-27 | 1.10812243121791e-22 |
74 | 8 | Mes | Mesangial cells | wk16 | CALD1 | 800 | 1441 | 1.28 | 0.94 | 0.59 | 1.1479946082269e-15 | 3.86805303295972e-11 |
74 | 8 | Mes | Mesangial cells | wk16 | ENSG00000267042 | NULL | 1.2 | 0.51 | 0.03 | 5.51481523833005e-55 | 1.85816184640293e-50 | |
74 | 8 | Mes | Mesangial cells | wk16 | MT2A | 4502 | 7406 | 1.19 | 0.51 | 0.17 | 5.2701977097967e-10 | 1.7757404163389e-05 |
74 | 8 | Mes | Mesangial cells | wk16 | BGN | 633 | 1044 | 1.18 | 0.54 | 0.14 | 2.43750881797242e-14 | 8.21294221127628e-10 |
74 | 8 | Mes | Mesangial cells | wk16 | A2M | 2 | 7 | 1.13 | 0.48 | 0.05 | 8.27505265968387e-29 | 2.78819624315388e-24 |
74 | 8 | Mes | Mesangial cells | wk16 | PTP4A3 | 11156 | 9636 | 1.13 | 0.4 | 0.09 | 5.14582588674586e-13 | 1.73383457428015e-08 |
74 | 8 | Mes | Mesangial cells | wk16 | KCNE4 | 23704 | 6244 | 1.11 | 0.4 | 0.05 | 2.29520810710773e-21 | 7.73347419608878e-17 |
74 | 8 | Mes | Mesangial cells | wk16 | MYL9 | 10398 | 15754 | 1.07 | 0.75 | 0.39 | 8.70553065023977e-09 | 0.000293324149729179 |
74 | 8 | Mes | Mesangial cells | wk16 | SOD3 | 6649 | 11181 | 1.06 | 0.29 | 0.02 | 3.37733787503836e-27 | 1.13796022361543e-22 |
74 | 8 | Mes | Mesangial cells | wk16 | IGFBP7 | 3490 | 5476 | 1.03 | 0.89 | 0.58 | 7.7861833061297e-11 | 2.62347660316734e-06 |
74 | 8 | Mes | Mesangial cells | wk16 | LHFPL6 | 10186 | 6586 | 1.01 | 0.4 | 0.1 | 2.85700700255392e-11 | 9.62639939440519e-07 |
74 | 8 | Mes | Mesangial cells | wk16 | CPE | 1363 | 2303 | 0.99 | 0.56 | 0.24 | 2.38017468445134e-08 | 0.000801976058179033 |
74 | 8 | Mes | Mesangial cells | wk16 | MAP3K20 | 51776 | 17797 | 0.95 | 0.48 | 0.13 | 2.07570541208393e-12 | 6.99388181547558e-08 |
74 | 8 | Mes | Mesangial cells | wk16 | GATA3 | 2625 | 4172 | 0.91 | 0.37 | 0.07 | 1.72929801891588e-12 | 5.82669674493518e-08 |
74 | 8 | Mes | Mesangial cells | wk16 | RRAD | 6236 | 10446 | 0.9 | 0.32 | 0.05 | 4.45565936253976e-14 | 1.50128986561415e-09 |
74 | 8 | Mes | Mesangial cells | wk16 | PIP4P2 | 55529 | 25452 | 0.9 | 0.4 | 0.09 | 7.62623969558519e-12 | 2.56958520303047e-07 |
74 | 8 | Mes | Mesangial cells | wk16 | HOPX | 84525 | 24961 | 0.89 | 0.32 | 0.07 | 1.86510182344926e-09 | 6.28427408392994e-05 |
74 | 8 | Mes | Mesangial cells | wk16 | PPP1R12A | 4659 | 7618 | 0.89 | 0.67 | 0.34 | 1.39137524315292e-08 | 0.000468809974427945 |
74 | 8 | Mes | Mesangial cells | wk16 | NOTCH3 | 4854 | 7883 | 0.85 | 0.37 | 0.1 | 1.53113747212931e-09 | 5.1590145985925e-05 |
74 | 8 | Mes | Mesangial cells | wk16 | COX4I2 | 84701 | 16232 | 0.84 | 0.24 | 0.005 | 5.6990835792244e-78 | 1.92024922118387e-73 |
74 | 8 | Mes | Mesangial cells | wk16 | WFDC1 | 58189 | 15466 | 0.82 | 0.32 | 0.01 | 1.50225609585898e-50 | 5.06170168938724e-46 |
74 | 8 | Mes | Mesangial cells | wk16 | GJA4 | 2701 | 4278 | 0.82 | 0.24 | 0.004 | 3.15303529075844e-89 | 1.06238371086815e-84 |
74 | 8 | Mes | Mesangial cells | wk16 | NT5DC2 | 64943 | 25717 | 0.81 | 0.43 | 0.17 | 1.4827010307562e-06 | 0.04 |
74 | 8 | Mes | Mesangial cells | wk16 | RGL3 | 57139 | 30282 | 0.81 | 0.29 | 0.03 | 1.30084013152693e-17 | 4.38305073916684e-13 |
74 | 8 | Mes | Mesangial cells | wk16 | PPFIBP1 | 8496 | 9249 | 0.81 | 0.43 | 0.14 | 1.18032811298286e-08 | 0.000397699754388443 |
74 | 8 | Mes | Mesangial cells | wk16 | POSTN | 10631 | 16953 | 0.8 | 0.32 | 0.06 | 3.16218017613239e-11 | 1.06546498854605e-06 |
74 | 8 | Mes | Mesangial cells | wk16 | CD248 | 57124 | 18219 | 0.78 | 0.29 | 0.05 | 2.48152065889072e-11 | 8.36123570806639e-07 |
74 | 8 | Mes | Mesangial cells | wk16 | HRC | 3270 | 5178 | 0.78 | 0.37 | 0.04 | 3.99246449309208e-22 | 1.34522098630245e-17 |
74 | 8 | Mes | Mesangial cells | wk16 | CCR10 | 2826 | 4474 | 0.76 | 0.21 | 0.01 | 1.53520084804323e-21 | 5.17270573739684e-17 |
74 | 8 | Mes | Mesangial cells | wk16 | GAS6 | 2621 | 4168 | 0.75 | 0.35 | 0.1 | 3.53195978465469e-07 | 0.01 |
74 | 8 | Mes | Mesangial cells | wk16 | CAMK1 | 8536 | 1459 | 0.75 | 0.35 | 0.08 | 1.76224383802719e-10 | 5.93770438784882e-06 |
74 | 8 | Mes | Mesangial cells | wk16 | ENG | 2022 | 3349 | 0.74 | 0.35 | 0.06 | 1.52041990263111e-12 | 5.12290281992526e-08 |
74 | 8 | Mes | Mesangial cells | wk16 | SPARCL1 | 8404 | 11220 | 0.74 | 0.18 | 0.01 | 7.81645740913258e-21 | 2.63367715943313e-16 |
74 | 8 | Mes | Mesangial cells | wk16 | MYH11 | 4629 | 7569 | 0.74 | 0.18 | 0.003 | 5.93270130128216e-76 | 1.99896437645401e-71 |
74 | 8 | Mes | Mesangial cells | wk16 | EPB41L2 | 2037 | 3379 | 0.73 | 0.48 | 0.17 | 2.6946070190166e-08 | 0.000907920888987452 |
74 | 8 | Mes | Mesangial cells | wk16 | FHL2 | 2274 | 3703 | 0.72 | 0.35 | 0.11 | 6.35919780099477e-07 | 0.02 |
74 | 8 | Mes | Mesangial cells | wk16 | MSRB3 | 253827 | 27375 | 0.72 | 0.37 | 0.09 | 2.33446383180898e-09 | 7.86574243489716e-05 |
74 | 8 | Mes | Mesangial cells | wk16 | SERPINH1 | 871 | 1546 | 0.71 | 0.83 | 0.57 | 3.5441347074615e-07 | 0.01 |
74 | 8 | Mes | Mesangial cells | wk16 | MCAM | 4162 | 6934 | 0.71 | 0.29 | 0.05 | 1.39819103149807e-10 | 4.71106486152959e-06 |
74 | 8 | Mes | Mesangial cells | wk16 | NTRK3 | 4916 | 8033 | 0.7 | 0.29 | 0.01 | 3.48941309781852e-39 | 1.17572284917897e-34 |
74 | 8 | Mes | Mesangial cells | wk16 | KCNA5 | 3741 | 6224 | 0.68 | 0.21 | 0.01 | 2.15892889579714e-29 | 7.27429502149887e-25 |
74 | 8 | Mes | Mesangial cells | wk16 | LRRC32 | 2615 | 4161 | 0.67 | 0.21 | 0.03 | 6.72694824618583e-11 | 2.26657794206985e-06 |
74 | 8 | Mes | Mesangial cells | wk16 | ITGA1 | 3672 | 6134 | 0.66 | 0.32 | 0.07 | 4.51120772791993e-10 | 1.52000633184534e-05 |
74 | 8 | Mes | Mesangial cells | wk16 | SEPTIN4 | 5414 | 9165 | 0.66 | 0.24 | 0.01 | 5.22418382225235e-32 | 1.76023649706971e-27 |
74 | 8 | Mes | Mesangial cells | wk16 | HIGD1B | 51751 | 24318 | 0.64 | 0.13 | 0.002 | 2.83108570508998e-51 | 9.53906017473018e-47 |
74 | 8 | Mes | Mesangial cells | wk16 | MAGED2 | 10916 | 16353 | 0.64 | 0.94 | 0.75 | 8.82669092206829e-08 | 0.00297406523928169 |
74 | 8 | Mes | Mesangial cells | wk16 | TBX2 | 6909 | 11597 | 0.63 | 0.32 | 0.1 | 1.31384366412524e-06 | 0.04 |
74 | 8 | Mes | Mesangial cells | wk16 | FN1 | 2335 | 3778 | 0.63 | 0.48 | 0.16 | 3.06193991439551e-08 | 0.00103169003475642 |
74 | 8 | Mes | Mesangial cells | wk16 | FAM162B | 221303 | 21549 | 0.62 | 0.13 | 0.02 | 1.0145019996642e-06 | 0.03 |
74 | 8 | Mes | Mesangial cells | wk16 | FOXS1 | 2307 | 3735 | 0.61 | 0.24 | 0.02 | 2.24460698968015e-18 | 7.56297879102829e-14 |
74 | 8 | Mes | Mesangial cells | wk16 | NPY1R | 4886 | 7956 | 0.6 | 0.16 | 0.01 | 8.75696786131104e-16 | 2.95057275119014e-11 |
74 | 8 | Mes | Mesangial cells | wk16 | TM4SF1 | 4071 | 11853 | 0.6 | 0.27 | 0.06 | 9.84697787855184e-07 | 0.03 |
74 | 8 | Mes | Mesangial cells | wk16 | TRPM3 | 80036 | 17992 | 0.59 | 0.24 | 0.06 | 1.15568082502077e-06 | 0.03 |
74 | 8 | Mes | Mesangial cells | wk16 | PIP5K1B | 8395 | 8995 | 0.56 | 0.18 | 0.01 | 1.10692108548314e-16 | 3.72965990542689e-12 |
74 | 8 | Mes | Mesangial cells | wk16 | PLN | 5350 | 9080 | 0.55 | 0.1 | 0.001 | 2.1467149608113e-52 | 7.2331413889576e-48 |
74 | 8 | Mes | Mesangial cells | wk16 | NGF | 4803 | 7808 | 0.54 | 0.18 | 0.005 | 8.14508767693697e-44 | 2.74440584186714e-39 |
74 | 8 | Mes | Mesangial cells | wk16 | GATA3-AS1 | 399717 | 33786 | 0.51 | 0.21 | 0.04 | 2.32450267164003e-08 | 0.000783217930182393 |
74 | 8 | Mes | Mesangial cells | wk16 | EBF1 | 1879 | 3126 | 0.51 | 0.27 | 0.05 | 5.66832877332362e-08 | 0.00190988669688366 |
74 | 8 | Mes | Mesangial cells | wk16 | COL23A1 | 91522 | 22990 | 0.5 | 0.21 | 0.01 | 9.51895287825064e-23 | 3.20731598279777e-18 |
74 | 8 | Mes | Mesangial cells | wk16 | PARM1 | 25849 | 24536 | 0.5 | 0.21 | 0.02 | 7.67065976754376e-13 | 2.5845521020762e-08 |
74 | 8 | Mes | Mesangial cells | wk16 | GJA5 | 2702 | 4279 | 0.5 | 0.13 | 0.007 | 2.89493094814356e-20 | 9.75418033667492e-16 |
74 | 8 | Mes | Mesangial cells | wk16 | CCDC153 | 283152 | 27446 | 0.48 | 0.13 | 0.01 | 1.66747191238603e-09 | 5.6183798615935e-05 |
74 | 8 | Mes | Mesangial cells | wk16 | ITGA7 | 3679 | 6143 | 0.48 | 0.16 | 0.009 | 1.14389949400371e-20 | 3.85425495509612e-16 |
74 | 8 | Mes | Mesangial cells | wk16 | MYOCD | 93649 | 16067 | 0.46 | 0.16 | 0.006 | 2.4566618787199e-32 | 8.27747653415882e-28 |
74 | 8 | Mes | Mesangial cells | wk16 | PLCL1 | 5334 | 9063 | 0.46 | 0.13 | 0.01 | 5.61968515627959e-08 | 0.00189349671655684 |
74 | 8 | Mes | Mesangial cells | wk16 | MCF2 | 4168 | 6940 | 0.46 | 0.13 | 0.001 | 8.40831517030205e-70 | 2.83309771348157e-65 |
74 | 8 | Mes | Mesangial cells | wk16 | TMEM204 | 79652 | 14158 | 0.44 | 0.27 | 0.06 | 1.14716189204067e-06 | 0.03 |
74 | 8 | Mes | Mesangial cells | wk16 | MIR143 | 406935 | 31530 | 0.44 | 0.16 | 0.01 | 1.01609546565207e-11 | 3.42363206196809e-07 |
74 | 8 | Mes | Mesangial cells | wk16 | PDE3A | 5139 | 8778 | 0.43 | 0.16 | 0.02 | 9.22178334327623e-08 | 0.00310718767968349 |
74 | 8 | Mes | Mesangial cells | wk16 | LINGO1 | 84894 | 21205 | 0.43 | 0.16 | 0.01 | 3.5732756778423e-10 | 1.20397950689218e-05 |
74 | 8 | Mes | Mesangial cells | wk16 | CD63 | 967 | 1692 | 0.43 | 0.97 | 0.87 | 5.01616492019312e-07 | 0.01 |
74 | 8 | Mes | Mesangial cells | wk16 | CCDC151 | 115948 | 28303 | 0.41 | 0.16 | 0.01 | 6.23278142698866e-15 | 2.10007337400956e-10 |
74 | 8 | Mes | Mesangial cells | wk16 | VIPR2 | 7434 | 12695 | 0.4 | 0.16 | 0.02 | 8.06384151730191e-10 | 2.7170307608397e-05 |
74 | 8 | Mes | Mesangial cells | wk16 | IL17B | 27190 | 5982 | 0.4 | 0.13 | 0.004 | 1.91112446002108e-29 | 6.43934275559504e-25 |
74 | 8 | Mes | Mesangial cells | wk16 | RCSD1 | 92241 | 28310 | 0.39 | 0.16 | 0.01 | 5.49728437426628e-11 | 1.85225499706528e-06 |
74 | 8 | Mes | Mesangial cells | wk16 | GUCY1A2 | 2977 | 4684 | 0.37 | 0.13 | 0.009 | 2.19427766572956e-14 | 7.39339916690918e-10 |
74 | 8 | Mes | Mesangial cells | wk16 | MALAT1 | 378938 | 29665 | 0.37 | 1 | 0.99 | 1.01867230180083e-06 | 0.03 |
74 | 8 | Mes | Mesangial cells | wk16 | C8orf88 | 100127983 | 44672 | 0.33 | 0.13 | 0.01 | 2.41144005750529e-08 | 0.000812510612975832 |
74 | 8 | Mes | Mesangial cells | wk16 | SLC35F1 | 222553 | 21483 | 0.32 | 0.1 | 0.005 | 1.35683280205117e-18 | 4.57171244323121e-14 |
74 | 8 | Mes | Mesangial cells | wk16 | CSPG4 | 1464 | 2466 | 0.32 | 0.1 | 0.009 | 7.1473410200121e-10 | 2.40822508328288e-05 |
74 | 8 | Mes | Mesangial cells | wk16 | INPP4B | 8821 | 6075 | 0.31 | 0.1 | 0.01 | 1.1578367675901e-08 | 0.00039012152047181 |
74 | 8 | Mes | Mesangial cells | wk16 | OR51E1 | 143503 | 15194 | 0.31 | 0.1 | 0.008 | 4.9154855152868e-11 | 1.65622368952073e-06 |
74 | 8 | Mes | Mesangial cells | wk16 | MRVI1 | 10335 | 7237 | 0.3 | 0.13 | 0.01 | 4.01312056593803e-08 | 0.00135218084348716 |
74 | 8 | Mes | Mesangial cells | wk16 | MOCS1 | 4337 | 7190 | 0.29 | 0.1 | 0.01 | 5.19380265798251e-07 | 0.01 |
74 | 8 | Mes | Mesangial cells | wk16 | SEPTIN5 | 5413 | 9164 | 0.27 | 0.1 | 0.006 | 5.19938667407616e-14 | 1.75188134596322e-09 |