Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: wk16
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74 | 8 | Mes | Mesangial cells | wk16 | REN | 5972 | 9958 | 5.23 | 0.37 | 0.01 | 1.4219631763604E-78 | 4.7911627264287E-74 |
| 74 | 8 | Mes | Mesangial cells | wk16 | ACTA2 | 59 | 130 | 2.38 | 0.56 | 0.11 | 1.0620147896455E-21 | 3.5783526322314E-17 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MEF2C | 4208 | 6996 | 2.15 | 0.73 | 0.06 | 3.7675446893749E-60 | 1.269436507638E-55 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MGP | 4256 | 7060 | 1.93 | 0.56 | 0.03 | 7.6491974554592E-62 | 2.5773205906424E-57 |
| 74 | 8 | Mes | Mesangial cells | wk16 | ADIRF | 10974 | 24043 | 1.78 | 0.32 | 0.02 | 3.45900092428E-30 | 1.1654757714269E-25 |
| 74 | 8 | Mes | Mesangial cells | wk16 | FRZB | 2487 | 3959 | 1.7 | 0.51 | 0.05 | 4.9644570166424E-36 | 1.6727241471875E-31 |
| 74 | 8 | Mes | Mesangial cells | wk16 | TINAGL1 | 64129 | 19168 | 1.69 | 0.56 | 0.07 | 3.0984182854154E-31 | 1.0439810570879E-26 |
| 74 | 8 | Mes | Mesangial cells | wk16 | GNAS | 2778 | 4392 | 1.68 | 0.86 | 0.66 | 2.0720354170078E-12 | 6.9815161340661E-8 |
| 74 | 8 | Mes | Mesangial cells | wk16 | ANGPT2 | 285 | 485 | 1.61 | 0.54 | 0.04 | 6.1454849499091E-48 | 2.0706596990224E-43 |
| 74 | 8 | Mes | Mesangial cells | wk16 | NDUFA4L2 | 56901 | 29836 | 1.61 | 0.48 | 0.01 | 5.3295548825984E-93 | 1.7957402221427E-88 |
| 74 | 8 | Mes | Mesangial cells | wk16 | SERPINI1 | 5274 | 8943 | 1.55 | 0.48 | 0.03 | 1.9169646295007E-57 | 6.4590206226397E-53 |
| 74 | 8 | Mes | Mesangial cells | wk16 | TPM2 | 7169 | 12011 | 1.46 | 0.78 | 0.28 | 5.9976335706922E-17 | 2.020842655309E-12 |
| 74 | 8 | Mes | Mesangial cells | wk16 | RERGL | 79785 | 26213 | 1.39 | 0.32 | 0.004 | 1.02159100264E-158 | 3.4421487242954E-154 |
| 74 | 8 | Mes | Mesangial cells | wk16 | ISYNA1 | 51477 | 29821 | 1.32 | 0.62 | 0.3 | 1.6191845566126E-9 | 5.4556804450506E-5 |
| 74 | 8 | Mes | Mesangial cells | wk16 | PDGFRB | 5159 | 8804 | 1.29 | 0.59 | 0.09 | 3.2887826652161E-27 | 1.1081224312179E-22 |
| 74 | 8 | Mes | Mesangial cells | wk16 | CALD1 | 800 | 1441 | 1.28 | 0.94 | 0.59 | 1.1479946082269E-15 | 3.8680530329597E-11 |
| 74 | 8 | Mes | Mesangial cells | wk16 | ENSG00000267042 | NULL | 1.2 | 0.51 | 0.03 | 5.5148152383301E-55 | 1.8581618464029E-50 | |
| 74 | 8 | Mes | Mesangial cells | wk16 | MT2A | 4502 | 7406 | 1.19 | 0.51 | 0.17 | 5.2701977097967E-10 | 1.7757404163389E-5 |
| 74 | 8 | Mes | Mesangial cells | wk16 | BGN | 633 | 1044 | 1.18 | 0.54 | 0.14 | 2.4375088179724E-14 | 8.2129422112763E-10 |
| 74 | 8 | Mes | Mesangial cells | wk16 | A2M | 2 | 7 | 1.13 | 0.48 | 0.05 | 8.2750526596839E-29 | 2.7881962431539E-24 |
| 74 | 8 | Mes | Mesangial cells | wk16 | PTP4A3 | 11156 | 9636 | 1.13 | 0.4 | 0.09 | 5.1458258867459E-13 | 1.7338345742802E-8 |
| 74 | 8 | Mes | Mesangial cells | wk16 | KCNE4 | 23704 | 6244 | 1.11 | 0.4 | 0.05 | 2.2952081071077E-21 | 7.7334741960888E-17 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MYL9 | 10398 | 15754 | 1.07 | 0.75 | 0.39 | 8.7055306502398E-9 | 0.00029332414972918 |
| 74 | 8 | Mes | Mesangial cells | wk16 | SOD3 | 6649 | 11181 | 1.06 | 0.29 | 0.02 | 3.3773378750384E-27 | 1.1379602236154E-22 |
| 74 | 8 | Mes | Mesangial cells | wk16 | IGFBP7 | 3490 | 5476 | 1.03 | 0.89 | 0.58 | 7.7861833061297E-11 | 2.6234766031673E-6 |
| 74 | 8 | Mes | Mesangial cells | wk16 | LHFPL6 | 10186 | 6586 | 1.01 | 0.4 | 0.1 | 2.8570070025539E-11 | 9.6263993944052E-7 |
| 74 | 8 | Mes | Mesangial cells | wk16 | CPE | 1363 | 2303 | 0.99 | 0.56 | 0.24 | 2.3801746844513E-8 | 0.00080197605817903 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MAP3K20 | 51776 | 17797 | 0.95 | 0.48 | 0.13 | 2.0757054120839E-12 | 6.9938818154756E-8 |
| 74 | 8 | Mes | Mesangial cells | wk16 | GATA3 | 2625 | 4172 | 0.91 | 0.37 | 0.07 | 1.7292980189159E-12 | 5.8266967449352E-8 |
| 74 | 8 | Mes | Mesangial cells | wk16 | RRAD | 6236 | 10446 | 0.9 | 0.32 | 0.05 | 4.4556593625398E-14 | 1.5012898656141E-9 |
| 74 | 8 | Mes | Mesangial cells | wk16 | PIP4P2 | 55529 | 25452 | 0.9 | 0.4 | 0.09 | 7.6262396955852E-12 | 2.5695852030305E-7 |
| 74 | 8 | Mes | Mesangial cells | wk16 | HOPX | 84525 | 24961 | 0.89 | 0.32 | 0.07 | 1.8651018234493E-9 | 6.2842740839299E-5 |
| 74 | 8 | Mes | Mesangial cells | wk16 | PPP1R12A | 4659 | 7618 | 0.89 | 0.67 | 0.34 | 1.3913752431529E-8 | 0.00046880997442795 |
| 74 | 8 | Mes | Mesangial cells | wk16 | NOTCH3 | 4854 | 7883 | 0.85 | 0.37 | 0.1 | 1.5311374721293E-9 | 5.1590145985925E-5 |
| 74 | 8 | Mes | Mesangial cells | wk16 | COX4I2 | 84701 | 16232 | 0.84 | 0.24 | 0.005 | 5.6990835792244E-78 | 1.9202492211839E-73 |
| 74 | 8 | Mes | Mesangial cells | wk16 | WFDC1 | 58189 | 15466 | 0.82 | 0.32 | 0.01 | 1.502256095859E-50 | 5.0617016893872E-46 |
| 74 | 8 | Mes | Mesangial cells | wk16 | GJA4 | 2701 | 4278 | 0.82 | 0.24 | 0.004 | 3.1530352907584E-89 | 1.0623837108682E-84 |
| 74 | 8 | Mes | Mesangial cells | wk16 | NT5DC2 | 64943 | 25717 | 0.81 | 0.43 | 0.17 | 1.4827010307562E-6 | 0.04 |
| 74 | 8 | Mes | Mesangial cells | wk16 | RGL3 | 57139 | 30282 | 0.81 | 0.29 | 0.03 | 1.3008401315269E-17 | 4.3830507391668E-13 |
| 74 | 8 | Mes | Mesangial cells | wk16 | PPFIBP1 | 8496 | 9249 | 0.81 | 0.43 | 0.14 | 1.1803281129829E-8 | 0.00039769975438844 |
| 74 | 8 | Mes | Mesangial cells | wk16 | POSTN | 10631 | 16953 | 0.8 | 0.32 | 0.06 | 3.1621801761324E-11 | 1.0654649885461E-6 |
| 74 | 8 | Mes | Mesangial cells | wk16 | CD248 | 57124 | 18219 | 0.78 | 0.29 | 0.05 | 2.4815206588907E-11 | 8.3612357080664E-7 |
| 74 | 8 | Mes | Mesangial cells | wk16 | HRC | 3270 | 5178 | 0.78 | 0.37 | 0.04 | 3.9924644930921E-22 | 1.3452209863025E-17 |
| 74 | 8 | Mes | Mesangial cells | wk16 | CCR10 | 2826 | 4474 | 0.76 | 0.21 | 0.01 | 1.5352008480432E-21 | 5.1727057373968E-17 |
| 74 | 8 | Mes | Mesangial cells | wk16 | GAS6 | 2621 | 4168 | 0.75 | 0.35 | 0.1 | 3.5319597846547E-7 | 0.01 |
| 74 | 8 | Mes | Mesangial cells | wk16 | CAMK1 | 8536 | 1459 | 0.75 | 0.35 | 0.08 | 1.7622438380272E-10 | 5.9377043878488E-6 |
| 74 | 8 | Mes | Mesangial cells | wk16 | ENG | 2022 | 3349 | 0.74 | 0.35 | 0.06 | 1.5204199026311E-12 | 5.1229028199253E-8 |
| 74 | 8 | Mes | Mesangial cells | wk16 | SPARCL1 | 8404 | 11220 | 0.74 | 0.18 | 0.01 | 7.8164574091326E-21 | 2.6336771594331E-16 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MYH11 | 4629 | 7569 | 0.74 | 0.18 | 0.003 | 5.9327013012822E-76 | 1.998964376454E-71 |
| 74 | 8 | Mes | Mesangial cells | wk16 | EPB41L2 | 2037 | 3379 | 0.73 | 0.48 | 0.17 | 2.6946070190166E-8 | 0.00090792088898745 |
| 74 | 8 | Mes | Mesangial cells | wk16 | FHL2 | 2274 | 3703 | 0.72 | 0.35 | 0.11 | 6.3591978009948E-7 | 0.02 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MSRB3 | 253827 | 27375 | 0.72 | 0.37 | 0.09 | 2.334463831809E-9 | 7.8657424348972E-5 |
| 74 | 8 | Mes | Mesangial cells | wk16 | SERPINH1 | 871 | 1546 | 0.71 | 0.83 | 0.57 | 3.5441347074615E-7 | 0.01 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MCAM | 4162 | 6934 | 0.71 | 0.29 | 0.05 | 1.3981910314981E-10 | 4.7110648615296E-6 |
| 74 | 8 | Mes | Mesangial cells | wk16 | NTRK3 | 4916 | 8033 | 0.7 | 0.29 | 0.01 | 3.4894130978185E-39 | 1.175722849179E-34 |
| 74 | 8 | Mes | Mesangial cells | wk16 | KCNA5 | 3741 | 6224 | 0.68 | 0.21 | 0.01 | 2.1589288957971E-29 | 7.2742950214989E-25 |
| 74 | 8 | Mes | Mesangial cells | wk16 | LRRC32 | 2615 | 4161 | 0.67 | 0.21 | 0.03 | 6.7269482461858E-11 | 2.2665779420698E-6 |
| 74 | 8 | Mes | Mesangial cells | wk16 | ITGA1 | 3672 | 6134 | 0.66 | 0.32 | 0.07 | 4.5112077279199E-10 | 1.5200063318453E-5 |
| 74 | 8 | Mes | Mesangial cells | wk16 | SEPTIN4 | 5414 | 9165 | 0.66 | 0.24 | 0.01 | 5.2241838222523E-32 | 1.7602364970697E-27 |
| 74 | 8 | Mes | Mesangial cells | wk16 | HIGD1B | 51751 | 24318 | 0.64 | 0.13 | 0.002 | 2.83108570509E-51 | 9.5390601747302E-47 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MAGED2 | 10916 | 16353 | 0.64 | 0.94 | 0.75 | 8.8266909220683E-8 | 0.0029740652392817 |
| 74 | 8 | Mes | Mesangial cells | wk16 | TBX2 | 6909 | 11597 | 0.63 | 0.32 | 0.1 | 1.3138436641252E-6 | 0.04 |
| 74 | 8 | Mes | Mesangial cells | wk16 | FN1 | 2335 | 3778 | 0.63 | 0.48 | 0.16 | 3.0619399143955E-8 | 0.0010316900347564 |
| 74 | 8 | Mes | Mesangial cells | wk16 | FAM162B | 221303 | 21549 | 0.62 | 0.13 | 0.02 | 1.0145019996642E-6 | 0.03 |
| 74 | 8 | Mes | Mesangial cells | wk16 | FOXS1 | 2307 | 3735 | 0.61 | 0.24 | 0.02 | 2.2446069896802E-18 | 7.5629787910283E-14 |
| 74 | 8 | Mes | Mesangial cells | wk16 | NPY1R | 4886 | 7956 | 0.6 | 0.16 | 0.01 | 8.756967861311E-16 | 2.9505727511901E-11 |
| 74 | 8 | Mes | Mesangial cells | wk16 | TM4SF1 | 4071 | 11853 | 0.6 | 0.27 | 0.06 | 9.8469778785518E-7 | 0.03 |
| 74 | 8 | Mes | Mesangial cells | wk16 | TRPM3 | 80036 | 17992 | 0.59 | 0.24 | 0.06 | 1.1556808250208E-6 | 0.03 |
| 74 | 8 | Mes | Mesangial cells | wk16 | PIP5K1B | 8395 | 8995 | 0.56 | 0.18 | 0.01 | 1.1069210854831E-16 | 3.7296599054269E-12 |
| 74 | 8 | Mes | Mesangial cells | wk16 | PLN | 5350 | 9080 | 0.55 | 0.1 | 0.001 | 2.1467149608113E-52 | 7.2331413889576E-48 |
| 74 | 8 | Mes | Mesangial cells | wk16 | NGF | 4803 | 7808 | 0.54 | 0.18 | 0.005 | 8.145087676937E-44 | 2.7444058418671E-39 |
| 74 | 8 | Mes | Mesangial cells | wk16 | GATA3-AS1 | 399717 | 33786 | 0.51 | 0.21 | 0.04 | 2.32450267164E-8 | 0.00078321793018239 |
| 74 | 8 | Mes | Mesangial cells | wk16 | EBF1 | 1879 | 3126 | 0.51 | 0.27 | 0.05 | 5.6683287733236E-8 | 0.0019098866968837 |
| 74 | 8 | Mes | Mesangial cells | wk16 | COL23A1 | 91522 | 22990 | 0.5 | 0.21 | 0.01 | 9.5189528782506E-23 | 3.2073159827978E-18 |
| 74 | 8 | Mes | Mesangial cells | wk16 | PARM1 | 25849 | 24536 | 0.5 | 0.21 | 0.02 | 7.6706597675438E-13 | 2.5845521020762E-8 |
| 74 | 8 | Mes | Mesangial cells | wk16 | GJA5 | 2702 | 4279 | 0.5 | 0.13 | 0.007 | 2.8949309481436E-20 | 9.7541803366749E-16 |
| 74 | 8 | Mes | Mesangial cells | wk16 | CCDC153 | 283152 | 27446 | 0.48 | 0.13 | 0.01 | 1.667471912386E-9 | 5.6183798615935E-5 |
| 74 | 8 | Mes | Mesangial cells | wk16 | ITGA7 | 3679 | 6143 | 0.48 | 0.16 | 0.009 | 1.1438994940037E-20 | 3.8542549550961E-16 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MYOCD | 93649 | 16067 | 0.46 | 0.16 | 0.006 | 2.4566618787199E-32 | 8.2774765341588E-28 |
| 74 | 8 | Mes | Mesangial cells | wk16 | PLCL1 | 5334 | 9063 | 0.46 | 0.13 | 0.01 | 5.6196851562796E-8 | 0.0018934967165568 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MCF2 | 4168 | 6940 | 0.46 | 0.13 | 0.001 | 8.408315170302E-70 | 2.8330977134816E-65 |
| 74 | 8 | Mes | Mesangial cells | wk16 | TMEM204 | 79652 | 14158 | 0.44 | 0.27 | 0.06 | 1.1471618920407E-6 | 0.03 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MIR143 | 406935 | 31530 | 0.44 | 0.16 | 0.01 | 1.0160954656521E-11 | 3.4236320619681E-7 |
| 74 | 8 | Mes | Mesangial cells | wk16 | PDE3A | 5139 | 8778 | 0.43 | 0.16 | 0.02 | 9.2217833432762E-8 | 0.0031071876796835 |
| 74 | 8 | Mes | Mesangial cells | wk16 | LINGO1 | 84894 | 21205 | 0.43 | 0.16 | 0.01 | 3.5732756778423E-10 | 1.2039795068922E-5 |
| 74 | 8 | Mes | Mesangial cells | wk16 | CD63 | 967 | 1692 | 0.43 | 0.97 | 0.87 | 5.0161649201931E-7 | 0.01 |
| 74 | 8 | Mes | Mesangial cells | wk16 | CCDC151 | 115948 | 28303 | 0.41 | 0.16 | 0.01 | 6.2327814269887E-15 | 2.1000733740096E-10 |
| 74 | 8 | Mes | Mesangial cells | wk16 | VIPR2 | 7434 | 12695 | 0.4 | 0.16 | 0.02 | 8.0638415173019E-10 | 2.7170307608397E-5 |
| 74 | 8 | Mes | Mesangial cells | wk16 | IL17B | 27190 | 5982 | 0.4 | 0.13 | 0.004 | 1.9111244600211E-29 | 6.439342755595E-25 |
| 74 | 8 | Mes | Mesangial cells | wk16 | RCSD1 | 92241 | 28310 | 0.39 | 0.16 | 0.01 | 5.4972843742663E-11 | 1.8522549970653E-6 |
| 74 | 8 | Mes | Mesangial cells | wk16 | GUCY1A2 | 2977 | 4684 | 0.37 | 0.13 | 0.009 | 2.1942776657296E-14 | 7.3933991669092E-10 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MALAT1 | 378938 | 29665 | 0.37 | 1 | 0.99 | 1.0186723018008E-6 | 0.03 |
| 74 | 8 | Mes | Mesangial cells | wk16 | C8orf88 | 100127983 | 44672 | 0.33 | 0.13 | 0.01 | 2.4114400575053E-8 | 0.00081251061297583 |
| 74 | 8 | Mes | Mesangial cells | wk16 | SLC35F1 | 222553 | 21483 | 0.32 | 0.1 | 0.005 | 1.3568328020512E-18 | 4.5717124432312E-14 |
| 74 | 8 | Mes | Mesangial cells | wk16 | CSPG4 | 1464 | 2466 | 0.32 | 0.1 | 0.009 | 7.1473410200121E-10 | 2.4082250832829E-5 |
| 74 | 8 | Mes | Mesangial cells | wk16 | INPP4B | 8821 | 6075 | 0.31 | 0.1 | 0.01 | 1.1578367675901E-8 | 0.00039012152047181 |
| 74 | 8 | Mes | Mesangial cells | wk16 | OR51E1 | 143503 | 15194 | 0.31 | 0.1 | 0.008 | 4.9154855152868E-11 | 1.6562236895207E-6 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MRVI1 | 10335 | 7237 | 0.3 | 0.13 | 0.01 | 4.013120565938E-8 | 0.0013521808434872 |
| 74 | 8 | Mes | Mesangial cells | wk16 | MOCS1 | 4337 | 7190 | 0.29 | 0.1 | 0.01 | 5.1938026579825E-7 | 0.01 |
| 74 | 8 | Mes | Mesangial cells | wk16 | SEPTIN5 | 5413 | 9164 | 0.27 | 0.1 | 0.006 | 5.1993866740762E-14 | 1.7518813459632E-9 |