Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: wk16
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74 | 15 | PTA | Pretubular aggregate | wk16 | HIST1H4C | 8364 | 4787 | 1.35 | 0.71 | 0.34 | 9.7968378494422E-87 | 3.300946544991E-82 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | HMGB2 | 3148 | 5000 | 1.29 | 0.94 | 0.5 | 6.0703637884042E-175 | 2.0453483748649E-170 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | TUBA1B | 10376 | 18809 | 1.2 | 0.96 | 0.78 | 7.7620909460409E-165 | 2.615358923359E-160 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | PTTG1 | 9232 | 9690 | 1.2 | 0.83 | 0.23 | 3.7133173413332E-192 | 1.2511651449888E-187 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | UBE2C | 11065 | 15937 | 1.17 | 0.68 | 0.11 | 1.6422237909072E-227 | 5.5333088410827E-223 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CCND1 | 595 | 1582 | 1.16 | 0.82 | 0.34 | 9.9598553751455E-134 | 3.3558736701015E-129 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CENPF | 1063 | 1857 | 1.07 | 0.69 | 0.11 | 4.4438974872556E-245 | 1.4973268193559E-240 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | MAD2L1 | 4085 | 6763 | 1.05 | 0.83 | 0.17 | 6.8217341608035E-256 | 2.2985151081411E-251 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | H2AFZ | 3015 | 4741 | 1.03 | 0.98 | 0.81 | 4.8156681653676E-168 | 1.6225912316389E-163 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | LHX1 | 3975 | 6593 | 0.95 | 0.76 | 0.22 | 8.6173961184449E-155 | 2.9035454481488E-150 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | BIRC5 | 332 | 593 | 0.92 | 0.67 | 0.1 | 8.6288852510298E-249 | 2.907416596482E-244 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | PCLAF | 9768 | 28961 | 0.92 | 0.82 | 0.24 | 3.0643352013966E-155 | 1.0324971027586E-150 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CALCA | 796 | 1437 | 0.91 | 0.56 | 0.06 | 1.0514602681412E-248 | 3.5427902274751E-244 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | NUSAP1 | 51203 | 18538 | 0.91 | 0.68 | 0.12 | 1.0933515675899E-215 | 3.6839387718375E-211 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CKS1B | 1163 | 19083 | 0.91 | 0.83 | 0.31 | 7.799006251741E-141 | 2.6277971664616E-136 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | HMGB1 | 3146 | 4983 | 0.89 | 1 | 0.96 | 1.4043053603359E-170 | 4.7316664811158E-166 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | TOP2A | 7153 | 11989 | 0.87 | 0.6 | 0.09 | 2.463701652832E-211 | 8.3011963490521E-207 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CCNB2 | 9133 | 1580 | 0.87 | 0.51 | 0.09 | 8.2658433154196E-153 | 2.7850932466975E-148 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | HMGA1 | 3159 | 5010 | 0.87 | 0.87 | 0.33 | 2.7810354471472E-140 | 9.3704208356177E-136 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | SMC4 | 10051 | 14013 | 0.85 | 0.77 | 0.23 | 4.6434495058571E-152 | 1.5645638765035E-147 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | TYMS | 7298 | 12441 | 0.84 | 0.79 | 0.21 | 1.0962909076075E-169 | 3.6938425840929E-165 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | HES4 | 57801 | 24149 | 0.84 | 0.88 | 0.46 | 2.316378348696E-101 | 7.8048052080963E-97 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | TMSB15A | 11013 | 30744 | 0.83 | 0.83 | 0.27 | 7.202482667899E-142 | 2.4268045101219E-137 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CCNB1 | 891 | 1579 | 0.82 | 0.49 | 0.08 | 1.8502228904093E-151 | 6.2341410069451E-147 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | UBE2T | 29089 | 25009 | 0.82 | 0.67 | 0.13 | 3.4492833522435E-187 | 1.1622015327049E-182 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | PCNA | 5111 | 8729 | 0.79 | 0.77 | 0.29 | 7.4927820324545E-108 | 2.5246179780152E-103 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | RANBP1 | 5902 | 9847 | 0.77 | 0.94 | 0.67 | 2.9264259437816E-113 | 9.8602995749776E-109 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | AURKB | 9212 | 11390 | 0.76 | 0.57 | 0.06 | 3.3267878080706E-252 | 1.1209278840513E-247 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | MKI67 | 4288 | 7107 | 0.73 | 0.55 | 0.07 | 5.1363375168057E-215 | 1.7306375629125E-210 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | HMGN2 | 3151 | 4986 | 0.73 | 0.98 | 0.89 | 8.6631950082166E-124 | 2.9189769260685E-119 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | MCM7 | 4176 | 6950 | 0.73 | 0.77 | 0.25 | 9.8766012312177E-123 | 3.3278220188465E-118 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | PAX8 | 7849 | 8622 | 0.73 | 0.86 | 0.33 | 1.3530193787265E-116 | 4.5588634946812E-112 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | PBK | 55872 | 18282 | 0.72 | 0.56 | 0.06 | 3.1986002175312E-243 | 1.077736357295E-238 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CKS2 | 1164 | 2000 | 0.71 | 0.74 | 0.36 | 1.6774425205363E-70 | 5.6519748286948E-66 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | ANP32E | 81611 | 16673 | 0.7 | 0.74 | 0.25 | 4.5011972823532E-114 | 1.5166334123161E-109 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | TUBB | 203068 | 20778 | 0.7 | 0.98 | 0.88 | 5.77266076704E-111 | 1.9450403188465E-106 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CDC20 | 991 | 1723 | 0.69 | 0.4 | 0.05 | 2.3282911245925E-148 | 7.8449441152021E-144 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | UBE2S | 27338 | 17895 | 0.68 | 0.78 | 0.4 | 2.7668531146641E-67 | 9.3226348845491E-63 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | HMGB3 | 3149 | 5004 | 0.68 | 0.79 | 0.32 | 1.8829461208175E-97 | 6.3443986594825E-93 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | LYPD1 | 116372 | 28431 | 0.68 | 0.77 | 0.32 | 1.8193449618903E-81 | 6.1301009145932E-77 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | RAN | 5901 | 9846 | 0.68 | 0.97 | 0.77 | 2.4148251411074E-118 | 8.1365118304474E-114 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | SFRP2 | 6423 | 10777 | 0.67 | 0.44 | 0.06 | 9.1184476340792E-151 | 3.0723697458266E-146 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | STMN1 | 3925 | 6510 | 0.67 | 0.99 | 0.92 | 5.7714094945978E-124 | 1.9446187151098E-119 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | HEY1 | 23462 | 4880 | 0.66 | 0.64 | 0.19 | 1.9085649926175E-104 | 6.4307188861255E-100 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CDK1 | 983 | 1722 | 0.66 | 0.54 | 0.08 | 3.8397787973077E-191 | 1.2937750679649E-186 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CCNA2 | 890 | 1578 | 0.65 | 0.49 | 0.05 | 6.4274560455734E-230 | 2.1656670399955E-225 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | TK1 | 7083 | 11830 | 0.64 | 0.58 | 0.11 | 7.4557889746973E-160 | 2.5121535371345E-155 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | H2AFY | 9555 | 4740 | 0.64 | 0.9 | 0.52 | 3.7777638679103E-89 | 1.2728797576537E-84 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CADM1 | 23705 | 5951 | 0.63 | 0.87 | 0.41 | 9.5068679267524E-83 | 3.2032440792399E-78 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | EMX2 | 2018 | 3341 | 0.63 | 0.58 | 0.19 | 4.1793644963232E-87 | 1.4081950733911E-82 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | H2AFX | 3014 | 4739 | 0.63 | 0.68 | 0.24 | 4.3064371871595E-96 | 1.4510109458415E-91 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | DEK | 7913 | 2768 | 0.63 | 0.93 | 0.58 | 8.4535469646217E-87 | 2.8483381142596E-82 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | ZWINT | 11130 | 13195 | 0.61 | 0.63 | 0.14 | 1.7997027335694E-145 | 6.0639183904886E-141 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | PIMREG | 54478 | 25483 | 0.61 | 0.46 | 0.06 | 2.3009230535354E-174 | 7.7527301365823E-170 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | TUBB2B | 347733 | 30829 | 0.6 | 0.65 | 0.29 | 2.2059167032365E-60 | 7.4326157398852E-56 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | PRC1 | 9055 | 9341 | 0.59 | 0.51 | 0.08 | 1.1719460432119E-160 | 3.9487549979983E-156 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | FEN1 | 2237 | 3650 | 0.59 | 0.54 | 0.11 | 2.2227007628815E-135 | 7.4891679504528E-131 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | NUCKS1 | 64710 | 29923 | 0.58 | 0.97 | 0.83 | 1.7975798339879E-86 | 6.0567654926387E-82 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | TPX2 | 22974 | 1249 | 0.58 | 0.47 | 0.05 | 1.078296461833E-206 | 3.6332120985001E-202 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CDKN3 | 1033 | 1791 | 0.58 | 0.46 | 0.06 | 4.5453787467865E-166 | 1.5315199149422E-161 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | NUF2 | 83540 | 14621 | 0.58 | 0.46 | 0.05 | 2.5651102347487E-189 | 8.6428824249623E-185 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CENPV | 201161 | 29920 | 0.58 | 0.77 | 0.33 | 1.8879251665303E-77 | 6.3611750561073E-73 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | DTYMK | 1841 | 3061 | 0.58 | 0.69 | 0.25 | 2.4892489713001E-91 | 8.3872754838985E-87 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | JAG1 | 182 | 6188 | 0.58 | 0.59 | 0.18 | 3.9541453507006E-96 | 1.3323097344651E-91 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | PHGDH | 26227 | 8923 | 0.57 | 0.77 | 0.33 | 1.2743320412348E-80 | 4.2937343797365E-76 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | DHFR | 1719 | 2861 | 0.57 | 0.55 | 0.15 | 2.9060935737703E-99 | 9.7917916874616E-95 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | DUT | 1854 | 3078 | 0.57 | 0.85 | 0.56 | 7.1304661524967E-49 | 2.4025392654222E-44 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | BEX1 | 55859 | 1036 | 0.56 | 0.77 | 0.35 | 1.0513053199793E-65 | 3.5422681451381E-61 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | TUBB4B | 10383 | 20771 | 0.56 | 0.85 | 0.54 | 1.5390018479524E-55 | 5.1855128264907E-51 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | ID1 | 3397 | 5360 | 0.56 | 0.95 | 0.73 | 3.5606500607225E-49 | 1.1997254314598E-44 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CENPU | 79682 | 21348 | 0.55 | 0.55 | 0.11 | 9.6179261161483E-134 | 3.240664025575E-129 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | GTSE1 | 51512 | 13698 | 0.55 | 0.44 | 0.06 | 4.0290011369341E-155 | 1.3575316430786E-150 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | SMC2 | 10592 | 14011 | 0.55 | 0.64 | 0.18 | 3.9874682693631E-107 | 1.3435375586792E-102 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CENPM | 79019 | 18352 | 0.55 | 0.53 | 0.08 | 5.9234737037058E-168 | 1.9958552297266E-163 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | GGH | 8836 | 4248 | 0.55 | 0.67 | 0.21 | 3.9684911638514E-99 | 1.3371434127481E-94 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | PKM | 5315 | 9021 | 0.55 | 0.93 | 0.64 | 7.6839248742118E-72 | 2.5890216471169E-67 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | SINHCAF | 58516 | 30702 | 0.54 | 0.88 | 0.51 | 4.9558355070604E-61 | 1.6698192157489E-56 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | ARL6IP1 | 23204 | 697 | 0.54 | 0.77 | 0.54 | 2.0254950934895E-24 | 6.8247031680035E-20 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | HNRNPD | 3184 | 5036 | 0.53 | 0.9 | 0.57 | 3.642420770196E-63 | 1.2272772543098E-58 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | LSM4 | 25804 | 17259 | 0.53 | 0.85 | 0.49 | 1.6987674119729E-66 | 5.7238269179013E-62 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | NASP | 4678 | 7644 | 0.53 | 0.88 | 0.53 | 3.022757460833E-60 | 1.0184878988531E-55 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | SMS | 6611 | 11123 | 0.53 | 0.82 | 0.41 | 3.1694369747861E-65 | 1.0679100942844E-60 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CXCR4 | 7852 | 2561 | 0.53 | 0.41 | 0.11 | 7.0179118299063E-70 | 2.3646152119686E-65 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | RRM2 | 6241 | 10452 | 0.52 | 0.43 | 0.06 | 5.6370344971516E-164 | 1.8993424034703E-159 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | HNRNPA2B1 | 3181 | 5033 | 0.52 | 0.99 | 0.9 | 2.5077595200351E-87 | 8.4496449268062E-83 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | ASF1B | 55723 | 20996 | 0.52 | 0.43 | 0.05 | 1.3502601968568E-175 | 4.5495667072894E-171 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CLSPN | 63967 | 19715 | 0.52 | 0.45 | 0.09 | 1.1549650086353E-109 | 3.8915391000957E-105 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | LMNB1 | 4001 | 6637 | 0.51 | 0.53 | 0.12 | 7.9330312938139E-113 | 2.6729555641377E-108 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | C21orf58 | 54058 | 1300 | 0.51 | 0.5 | 0.09 | 1.8625218953334E-132 | 6.2755812741365E-128 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | HMMR | 3161 | 5012 | 0.51 | 0.29 | 0.04 | 1.1705469027106E-114 | 3.9440407339932E-110 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CCDC34 | 91057 | 25079 | 0.51 | 0.71 | 0.24 | 2.595588013126E-95 | 8.7455742514267E-91 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | TUBA1C | 84790 | 20768 | 0.51 | 0.49 | 0.19 | 2.9366043338082E-50 | 9.8945946423333E-46 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CENPA | 1058 | 1851 | 0.51 | 0.29 | 0.03 | 2.6282952050867E-118 | 8.8557778640192E-114 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | KIF22 | 3835 | 6391 | 0.51 | 0.56 | 0.15 | 2.4545986091777E-103 | 8.2705245537634E-99 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | SGO1 | 151648 | 25088 | 0.51 | 0.45 | 0.06 | 3.9426870817236E-164 | 1.3284489853159E-159 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | CENPW | 387103 | 21488 | 0.5 | 0.68 | 0.21 | 1.8396200068654E-96 | 6.1984156511321E-92 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | KRT18 | 3875 | 6430 | 0.5 | 0.8 | 0.34 | 2.9945217721142E-78 | 1.0089741658961E-73 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | RNASEH2A | 10535 | 18518 | 0.5 | 0.56 | 0.16 | 5.9041890985914E-94 | 1.9893574748794E-89 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | IGFBP2 | 3485 | 5471 | 0.49 | 0.93 | 0.63 | 5.0867904373913E-56 | 1.7139431699746E-51 |
| 74 | 15 | PTA | Pretubular aggregate | wk16 | H2AFV | 94239 | 20664 | 0.49 | 0.87 | 0.48 | 3.077139593047E-62 | 1.0368114144812E-57 |