Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: wk16
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
74 | 15 | PTA | Pretubular aggregate | wk16 | HIST1H4C | 8364 | 4787 | 1.35 | 0.71 | 0.34 | 9.79683784944216e-87 | 3.30094654499104e-82 |
74 | 15 | PTA | Pretubular aggregate | wk16 | HMGB2 | 3148 | 5000 | 1.29 | 0.94 | 0.5 | 6.07036378840424e-175 | 2.04534837486493e-170 |
74 | 15 | PTA | Pretubular aggregate | wk16 | TUBA1B | 10376 | 18809 | 1.2 | 0.96 | 0.78 | 7.76209094604093e-165 | 2.61535892335903e-160 |
74 | 15 | PTA | Pretubular aggregate | wk16 | PTTG1 | 9232 | 9690 | 1.2 | 0.83 | 0.23 | 3.71331734133323e-192 | 1.25116514498882e-187 |
74 | 15 | PTA | Pretubular aggregate | wk16 | UBE2C | 11065 | 15937 | 1.17 | 0.68 | 0.11 | 1.64222379090719e-227 | 5.53330884108269e-223 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CCND1 | 595 | 1582 | 1.16 | 0.82 | 0.34 | 9.95985537514551e-134 | 3.35587367010153e-129 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CENPF | 1063 | 1857 | 1.07 | 0.69 | 0.11 | 4.4438974872556e-245 | 1.4973268193559e-240 |
74 | 15 | PTA | Pretubular aggregate | wk16 | MAD2L1 | 4085 | 6763 | 1.05 | 0.83 | 0.17 | 6.8217341608035e-256 | 2.29851510814113e-251 |
74 | 15 | PTA | Pretubular aggregate | wk16 | H2AFZ | 3015 | 4741 | 1.03 | 0.98 | 0.81 | 4.81566816536755e-168 | 1.62259123163894e-163 |
74 | 15 | PTA | Pretubular aggregate | wk16 | LHX1 | 3975 | 6593 | 0.95 | 0.76 | 0.22 | 8.61739611844487e-155 | 2.90354544814882e-150 |
74 | 15 | PTA | Pretubular aggregate | wk16 | BIRC5 | 332 | 593 | 0.92 | 0.67 | 0.1 | 8.62888525102976e-249 | 2.90741659648197e-244 |
74 | 15 | PTA | Pretubular aggregate | wk16 | PCLAF | 9768 | 28961 | 0.92 | 0.82 | 0.24 | 3.06433520139662e-155 | 1.03249710275858e-150 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CALCA | 796 | 1437 | 0.91 | 0.56 | 0.06 | 1.05146026814124e-248 | 3.54279022747509e-244 |
74 | 15 | PTA | Pretubular aggregate | wk16 | NUSAP1 | 51203 | 18538 | 0.91 | 0.68 | 0.12 | 1.09335156758994e-215 | 3.68393877183755e-211 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CKS1B | 1163 | 19083 | 0.91 | 0.83 | 0.31 | 7.79900625174103e-141 | 2.62779716646162e-136 |
74 | 15 | PTA | Pretubular aggregate | wk16 | HMGB1 | 3146 | 4983 | 0.89 | 1 | 0.96 | 1.40430536033591e-170 | 4.73166648111581e-166 |
74 | 15 | PTA | Pretubular aggregate | wk16 | TOP2A | 7153 | 11989 | 0.87 | 0.6 | 0.09 | 2.46370165283197e-211 | 8.30119634905206e-207 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CCNB2 | 9133 | 1580 | 0.87 | 0.51 | 0.09 | 8.26584331541964e-153 | 2.78509324669749e-148 |
74 | 15 | PTA | Pretubular aggregate | wk16 | HMGA1 | 3159 | 5010 | 0.87 | 0.87 | 0.33 | 2.78103544714717e-140 | 9.37042083561768e-136 |
74 | 15 | PTA | Pretubular aggregate | wk16 | SMC4 | 10051 | 14013 | 0.85 | 0.77 | 0.23 | 4.64344950585708e-152 | 1.56456387650348e-147 |
74 | 15 | PTA | Pretubular aggregate | wk16 | TYMS | 7298 | 12441 | 0.84 | 0.79 | 0.21 | 1.09629090760755e-169 | 3.69384258409289e-165 |
74 | 15 | PTA | Pretubular aggregate | wk16 | HES4 | 57801 | 24149 | 0.84 | 0.88 | 0.46 | 2.31637834869601e-101 | 7.80480520809634e-97 |
74 | 15 | PTA | Pretubular aggregate | wk16 | TMSB15A | 11013 | 30744 | 0.83 | 0.83 | 0.27 | 7.20248266789896e-142 | 2.42680451012187e-137 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CCNB1 | 891 | 1579 | 0.82 | 0.49 | 0.08 | 1.85022289040931e-151 | 6.23414100694514e-147 |
74 | 15 | PTA | Pretubular aggregate | wk16 | UBE2T | 29089 | 25009 | 0.82 | 0.67 | 0.13 | 3.44928335224347e-187 | 1.16220153270492e-182 |
74 | 15 | PTA | Pretubular aggregate | wk16 | PCNA | 5111 | 8729 | 0.79 | 0.77 | 0.29 | 7.49278203245449e-108 | 2.52461797801522e-103 |
74 | 15 | PTA | Pretubular aggregate | wk16 | RANBP1 | 5902 | 9847 | 0.77 | 0.94 | 0.67 | 2.92642594378156e-113 | 9.86029957497758e-109 |
74 | 15 | PTA | Pretubular aggregate | wk16 | AURKB | 9212 | 11390 | 0.76 | 0.57 | 0.06 | 3.32678780807057e-252 | 1.1209278840513e-247 |
74 | 15 | PTA | Pretubular aggregate | wk16 | MKI67 | 4288 | 7107 | 0.73 | 0.55 | 0.07 | 5.13633751680566e-215 | 1.7306375629125e-210 |
74 | 15 | PTA | Pretubular aggregate | wk16 | HMGN2 | 3151 | 4986 | 0.73 | 0.98 | 0.89 | 8.66319500821657e-124 | 2.91897692606849e-119 |
74 | 15 | PTA | Pretubular aggregate | wk16 | MCM7 | 4176 | 6950 | 0.73 | 0.77 | 0.25 | 9.87660123121768e-123 | 3.32782201884649e-118 |
74 | 15 | PTA | Pretubular aggregate | wk16 | PAX8 | 7849 | 8622 | 0.73 | 0.86 | 0.33 | 1.35301937872655e-116 | 4.55886349468125e-112 |
74 | 15 | PTA | Pretubular aggregate | wk16 | PBK | 55872 | 18282 | 0.72 | 0.56 | 0.06 | 3.19860021753122e-243 | 1.07773635729497e-238 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CKS2 | 1164 | 2000 | 0.71 | 0.74 | 0.36 | 1.67744252053625e-70 | 5.65197482869483e-66 |
74 | 15 | PTA | Pretubular aggregate | wk16 | ANP32E | 81611 | 16673 | 0.7 | 0.74 | 0.25 | 4.50119728235325e-114 | 1.5166334123161e-109 |
74 | 15 | PTA | Pretubular aggregate | wk16 | TUBB | 203068 | 20778 | 0.7 | 0.98 | 0.88 | 5.77266076704e-111 | 1.94504031884646e-106 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CDC20 | 991 | 1723 | 0.69 | 0.4 | 0.05 | 2.32829112459254e-148 | 7.84494411520211e-144 |
74 | 15 | PTA | Pretubular aggregate | wk16 | UBE2S | 27338 | 17895 | 0.68 | 0.78 | 0.4 | 2.76685311466406e-67 | 9.32263488454908e-63 |
74 | 15 | PTA | Pretubular aggregate | wk16 | HMGB3 | 3149 | 5004 | 0.68 | 0.79 | 0.32 | 1.88294612081751e-97 | 6.34439865948253e-93 |
74 | 15 | PTA | Pretubular aggregate | wk16 | LYPD1 | 116372 | 28431 | 0.68 | 0.77 | 0.32 | 1.8193449618903e-81 | 6.13010091459317e-77 |
74 | 15 | PTA | Pretubular aggregate | wk16 | RAN | 5901 | 9846 | 0.68 | 0.97 | 0.77 | 2.41482514110744e-118 | 8.13651183044741e-114 |
74 | 15 | PTA | Pretubular aggregate | wk16 | SFRP2 | 6423 | 10777 | 0.67 | 0.44 | 0.06 | 9.11844763407918e-151 | 3.07236974582664e-146 |
74 | 15 | PTA | Pretubular aggregate | wk16 | STMN1 | 3925 | 6510 | 0.67 | 0.99 | 0.92 | 5.77140949459781e-124 | 1.94461871510978e-119 |
74 | 15 | PTA | Pretubular aggregate | wk16 | HEY1 | 23462 | 4880 | 0.66 | 0.64 | 0.19 | 1.90856499261752e-104 | 6.43071888612548e-100 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CDK1 | 983 | 1722 | 0.66 | 0.54 | 0.08 | 3.83977879730767e-191 | 1.29377506796485e-186 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CCNA2 | 890 | 1578 | 0.65 | 0.49 | 0.05 | 6.42745604557342e-230 | 2.16566703999551e-225 |
74 | 15 | PTA | Pretubular aggregate | wk16 | TK1 | 7083 | 11830 | 0.64 | 0.58 | 0.11 | 7.45578897469729e-160 | 2.5121535371345e-155 |
74 | 15 | PTA | Pretubular aggregate | wk16 | H2AFY | 9555 | 4740 | 0.64 | 0.9 | 0.52 | 3.77776386791034e-89 | 1.27287975765371e-84 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CADM1 | 23705 | 5951 | 0.63 | 0.87 | 0.41 | 9.50686792675237e-83 | 3.20324407923994e-78 |
74 | 15 | PTA | Pretubular aggregate | wk16 | EMX2 | 2018 | 3341 | 0.63 | 0.58 | 0.19 | 4.1793644963232e-87 | 1.40819507339114e-82 |
74 | 15 | PTA | Pretubular aggregate | wk16 | H2AFX | 3014 | 4739 | 0.63 | 0.68 | 0.24 | 4.30643718715945e-96 | 1.45101094584151e-91 |
74 | 15 | PTA | Pretubular aggregate | wk16 | DEK | 7913 | 2768 | 0.63 | 0.93 | 0.58 | 8.45354696462168e-87 | 2.84833811425963e-82 |
74 | 15 | PTA | Pretubular aggregate | wk16 | ZWINT | 11130 | 13195 | 0.61 | 0.63 | 0.14 | 1.79970273356937e-145 | 6.06391839048863e-141 |
74 | 15 | PTA | Pretubular aggregate | wk16 | PIMREG | 54478 | 25483 | 0.61 | 0.46 | 0.06 | 2.30092305353544e-174 | 7.75273013658231e-170 |
74 | 15 | PTA | Pretubular aggregate | wk16 | TUBB2B | 347733 | 30829 | 0.6 | 0.65 | 0.29 | 2.20591670323653e-60 | 7.43261573988516e-56 |
74 | 15 | PTA | Pretubular aggregate | wk16 | PRC1 | 9055 | 9341 | 0.59 | 0.51 | 0.08 | 1.17194604321195e-160 | 3.94875499799834e-156 |
74 | 15 | PTA | Pretubular aggregate | wk16 | FEN1 | 2237 | 3650 | 0.59 | 0.54 | 0.11 | 2.22270076288148e-135 | 7.48916795045285e-131 |
74 | 15 | PTA | Pretubular aggregate | wk16 | NUCKS1 | 64710 | 29923 | 0.58 | 0.97 | 0.83 | 1.79757983398787e-86 | 6.05676549263872e-82 |
74 | 15 | PTA | Pretubular aggregate | wk16 | TPX2 | 22974 | 1249 | 0.58 | 0.47 | 0.05 | 1.07829646183301e-206 | 3.63321209850014e-202 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CDKN3 | 1033 | 1791 | 0.58 | 0.46 | 0.06 | 4.54537874678647e-166 | 1.53151991494223e-161 |
74 | 15 | PTA | Pretubular aggregate | wk16 | NUF2 | 83540 | 14621 | 0.58 | 0.46 | 0.05 | 2.56511023474871e-189 | 8.64288242496231e-185 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CENPV | 201161 | 29920 | 0.58 | 0.77 | 0.33 | 1.88792516653033e-77 | 6.36117505610728e-73 |
74 | 15 | PTA | Pretubular aggregate | wk16 | DTYMK | 1841 | 3061 | 0.58 | 0.69 | 0.25 | 2.48924897130008e-91 | 8.3872754838985e-87 |
74 | 15 | PTA | Pretubular aggregate | wk16 | JAG1 | 182 | 6188 | 0.58 | 0.59 | 0.18 | 3.95414535070058e-96 | 1.33230973446505e-91 |
74 | 15 | PTA | Pretubular aggregate | wk16 | PHGDH | 26227 | 8923 | 0.57 | 0.77 | 0.33 | 1.27433204123479e-80 | 4.29373437973649e-76 |
74 | 15 | PTA | Pretubular aggregate | wk16 | DHFR | 1719 | 2861 | 0.57 | 0.55 | 0.15 | 2.90609357377029e-99 | 9.79179168746162e-95 |
74 | 15 | PTA | Pretubular aggregate | wk16 | DUT | 1854 | 3078 | 0.57 | 0.85 | 0.56 | 7.1304661524967e-49 | 2.40253926542224e-44 |
74 | 15 | PTA | Pretubular aggregate | wk16 | BEX1 | 55859 | 1036 | 0.56 | 0.77 | 0.35 | 1.05130531997927e-65 | 3.54226814513814e-61 |
74 | 15 | PTA | Pretubular aggregate | wk16 | TUBB4B | 10383 | 20771 | 0.56 | 0.85 | 0.54 | 1.53900184795236e-55 | 5.18551282649068e-51 |
74 | 15 | PTA | Pretubular aggregate | wk16 | ID1 | 3397 | 5360 | 0.56 | 0.95 | 0.73 | 3.56065006072251e-49 | 1.19972543145984e-44 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CENPU | 79682 | 21348 | 0.55 | 0.55 | 0.11 | 9.61792611614833e-134 | 3.24066402557502e-129 |
74 | 15 | PTA | Pretubular aggregate | wk16 | GTSE1 | 51512 | 13698 | 0.55 | 0.44 | 0.06 | 4.02900113693409e-155 | 1.35753164307857e-150 |
74 | 15 | PTA | Pretubular aggregate | wk16 | SMC2 | 10592 | 14011 | 0.55 | 0.64 | 0.18 | 3.98746826936314e-107 | 1.34353755867922e-102 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CENPM | 79019 | 18352 | 0.55 | 0.53 | 0.08 | 5.9234737037058e-168 | 1.99585522972663e-163 |
74 | 15 | PTA | Pretubular aggregate | wk16 | GGH | 8836 | 4248 | 0.55 | 0.67 | 0.21 | 3.96849116385136e-99 | 1.33714341274808e-94 |
74 | 15 | PTA | Pretubular aggregate | wk16 | PKM | 5315 | 9021 | 0.55 | 0.93 | 0.64 | 7.68392487421178e-72 | 2.58902164711692e-67 |
74 | 15 | PTA | Pretubular aggregate | wk16 | SINHCAF | 58516 | 30702 | 0.54 | 0.88 | 0.51 | 4.95583550706038e-61 | 1.66981921574893e-56 |
74 | 15 | PTA | Pretubular aggregate | wk16 | ARL6IP1 | 23204 | 697 | 0.54 | 0.77 | 0.54 | 2.0254950934895e-24 | 6.82470316800351e-20 |
74 | 15 | PTA | Pretubular aggregate | wk16 | HNRNPD | 3184 | 5036 | 0.53 | 0.9 | 0.57 | 3.642420770196e-63 | 1.22727725430984e-58 |
74 | 15 | PTA | Pretubular aggregate | wk16 | LSM4 | 25804 | 17259 | 0.53 | 0.85 | 0.49 | 1.69876741197286e-66 | 5.72382691790135e-62 |
74 | 15 | PTA | Pretubular aggregate | wk16 | NASP | 4678 | 7644 | 0.53 | 0.88 | 0.53 | 3.022757460833e-60 | 1.01848789885307e-55 |
74 | 15 | PTA | Pretubular aggregate | wk16 | SMS | 6611 | 11123 | 0.53 | 0.82 | 0.41 | 3.16943697478608e-65 | 1.06791009428442e-60 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CXCR4 | 7852 | 2561 | 0.53 | 0.41 | 0.11 | 7.01791182990625e-70 | 2.36461521196861e-65 |
74 | 15 | PTA | Pretubular aggregate | wk16 | RRM2 | 6241 | 10452 | 0.52 | 0.43 | 0.06 | 5.63703449715157e-164 | 1.89934240347025e-159 |
74 | 15 | PTA | Pretubular aggregate | wk16 | HNRNPA2B1 | 3181 | 5033 | 0.52 | 0.99 | 0.9 | 2.50775952003509e-87 | 8.44964492680623e-83 |
74 | 15 | PTA | Pretubular aggregate | wk16 | ASF1B | 55723 | 20996 | 0.52 | 0.43 | 0.05 | 1.35026019685682e-175 | 4.54956670728938e-171 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CLSPN | 63967 | 19715 | 0.52 | 0.45 | 0.09 | 1.15496500863527e-109 | 3.89153910009567e-105 |
74 | 15 | PTA | Pretubular aggregate | wk16 | LMNB1 | 4001 | 6637 | 0.51 | 0.53 | 0.12 | 7.93303129381389e-113 | 2.67295556413765e-108 |
74 | 15 | PTA | Pretubular aggregate | wk16 | C21orf58 | 54058 | 1300 | 0.51 | 0.5 | 0.09 | 1.86252189533343e-132 | 6.27558127413646e-128 |
74 | 15 | PTA | Pretubular aggregate | wk16 | HMMR | 3161 | 5012 | 0.51 | 0.29 | 0.04 | 1.17054690271062e-114 | 3.94404073399316e-110 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CCDC34 | 91057 | 25079 | 0.51 | 0.71 | 0.24 | 2.59558801312597e-95 | 8.74557425142665e-91 |
74 | 15 | PTA | Pretubular aggregate | wk16 | TUBA1C | 84790 | 20768 | 0.51 | 0.49 | 0.19 | 2.9366043338082e-50 | 9.89459464233334e-46 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CENPA | 1058 | 1851 | 0.51 | 0.29 | 0.03 | 2.62829520508673e-118 | 8.85577786401922e-114 |
74 | 15 | PTA | Pretubular aggregate | wk16 | KIF22 | 3835 | 6391 | 0.51 | 0.56 | 0.15 | 2.45459860917773e-103 | 8.27052455376343e-99 |
74 | 15 | PTA | Pretubular aggregate | wk16 | SGO1 | 151648 | 25088 | 0.51 | 0.45 | 0.06 | 3.94268708172355e-164 | 1.32844898531593e-159 |
74 | 15 | PTA | Pretubular aggregate | wk16 | CENPW | 387103 | 21488 | 0.5 | 0.68 | 0.21 | 1.83962000686536e-96 | 6.19841565113214e-92 |
74 | 15 | PTA | Pretubular aggregate | wk16 | KRT18 | 3875 | 6430 | 0.5 | 0.8 | 0.34 | 2.99452177211416e-78 | 1.00897416589615e-73 |
74 | 15 | PTA | Pretubular aggregate | wk16 | RNASEH2A | 10535 | 18518 | 0.5 | 0.56 | 0.16 | 5.90418909859139e-94 | 1.98935747487938e-89 |
74 | 15 | PTA | Pretubular aggregate | wk16 | IGFBP2 | 3485 | 5471 | 0.49 | 0.93 | 0.63 | 5.08679043739131e-56 | 1.71394316997463e-51 |
74 | 15 | PTA | Pretubular aggregate | wk16 | H2AFV | 94239 | 20664 | 0.49 | 0.87 | 0.48 | 3.07713959304696e-62 | 1.03681141448124e-57 |