Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: wk16
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
74 | 13 | Pod | Podocyte | wk16 | NPHS2 | 7827 | 13394 | 2.45 | 0.94 | 0.07 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | TPPP3 | 51673 | 24162 | 2.38 | 0.91 | 0.09 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | PODXL | 5420 | 9171 | 2.3 | 0.94 | 0.1 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | SOST | 50964 | 13771 | 2.27 | 0.9 | 0.08 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | AIF1 | 199 | 352 | 2.13 | 0.84 | 0.07 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | THSD7A | 221981 | 22207 | 2.13 | 0.91 | 0.11 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | MAFB | 9935 | 6408 | 2.13 | 0.99 | 0.3 | 9.8542779881485e-307 | 3.32030042532675e-302 |
74 | 13 | Pod | Podocyte | wk16 | PTPRO | 5800 | 9678 | 2.06 | 0.87 | 0.05 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | CLIC5 | 53405 | 13517 | 2.02 | 0.83 | 0.05 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | GADD45A | 1647 | 4095 | 1.84 | 0.96 | 0.45 | 4.63904657115031e-238 | 1.56308035168339e-233 |
74 | 13 | Pod | Podocyte | wk16 | MYL9 | 10398 | 15754 | 1.83 | 0.91 | 0.35 | 2.79527890365796e-223 | 9.41841273798514e-219 |
74 | 13 | Pod | Podocyte | wk16 | HTRA1 | 5654 | 9476 | 1.82 | 0.74 | 0.11 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | MPP5 | 64398 | 18669 | 1.76 | 0.79 | 0.11 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | MME | 4311 | 7154 | 1.75 | 0.73 | 0.06 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | NES | 10763 | 7756 | 1.7 | 0.85 | 0.19 | 3.51275496508371e-296 | 1.18358765793531e-291 |
74 | 13 | Pod | Podocyte | wk16 | MXRA8 | 54587 | 7542 | 1.6 | 0.89 | 0.26 | 2.27777341928928e-260 | 7.67472975895332e-256 |
74 | 13 | Pod | Podocyte | wk16 | BST2 | 684 | 1119 | 1.58 | 0.96 | 0.45 | 9.40163318816016e-197 | 3.16778628641868e-192 |
74 | 13 | Pod | Podocyte | wk16 | PTH1R | 5745 | 9608 | 1.55 | 0.64 | 0.06 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | IQGAP2 | 10788 | 6111 | 1.52 | 0.75 | 0.11 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | TNNI1 | 7135 | 11945 | 1.47 | 0.61 | 0.09 | 1.57685373720466e-237 | 5.31305098213739e-233 |
74 | 13 | Pod | Podocyte | wk16 | SPINT2 | 10653 | 11247 | 1.46 | 0.94 | 0.41 | 2.24129570164456e-211 | 7.55182173712119e-207 |
74 | 13 | Pod | Podocyte | wk16 | PDLIM2 | 64236 | 13992 | 1.4 | 0.74 | 0.18 | 1.56569112364761e-207 | 5.27543967201827e-203 |
74 | 13 | Pod | Podocyte | wk16 | LOXL1 | 4016 | 6665 | 1.4 | 0.78 | 0.18 | 3.96445625988344e-236 | 1.33578389220513e-231 |
74 | 13 | Pod | Podocyte | wk16 | S100A6 | 6277 | 10496 | 1.34 | 0.9 | 0.39 | 5.21914709937077e-177 | 1.75853942366199e-172 |
74 | 13 | Pod | Podocyte | wk16 | ANXA2 | 302 | 537 | 1.32 | 0.93 | 0.43 | 3.85577043973235e-179 | 1.29916329196342e-174 |
74 | 13 | Pod | Podocyte | wk16 | PLTP | 5360 | 9093 | 1.3 | 0.61 | 0.1 | 8.14416757452342e-229 | 2.74409582255992e-224 |
74 | 13 | Pod | Podocyte | wk16 | VEGFA | 7422 | 12680 | 1.3 | 0.68 | 0.15 | 2.48991057183017e-206 | 8.38950468072456e-202 |
74 | 13 | Pod | Podocyte | wk16 | SPARC | 6678 | 11219 | 1.3 | 0.99 | 0.65 | 4.07988752750901e-185 | 1.37467730351888e-180 |
74 | 13 | Pod | Podocyte | wk16 | WT1 | 7490 | 12796 | 1.29 | 0.88 | 0.33 | 3.171451870455e-184 | 1.06858899323111e-179 |
74 | 13 | Pod | Podocyte | wk16 | TNNT2 | 7139 | 11949 | 1.28 | 0.53 | 0.05 | 4.29678394477394e-279 | 1.44775838235213e-274 |
74 | 13 | Pod | Podocyte | wk16 | RETREG1 | 54463 | 25964 | 1.28 | 0.65 | 0.09 | 4.26903388203033e-263 | 1.4384082762113e-258 |
74 | 13 | Pod | Podocyte | wk16 | TCF21 | 6943 | 11632 | 1.27 | 0.95 | 0.35 | 4.57841421926448e-187 | 1.54265088703897e-182 |
74 | 13 | Pod | Podocyte | wk16 | DUSP1 | 1843 | 3064 | 1.25 | 0.87 | 0.6 | 3.14004427109117e-110 | 1.05800651670146e-105 |
74 | 13 | Pod | Podocyte | wk16 | CPXM1 | 56265 | 15771 | 1.25 | 0.76 | 0.3 | 5.4282690677173e-144 | 1.82900097967667e-139 |
74 | 13 | Pod | Podocyte | wk16 | MRGPRF | 116535 | 24828 | 1.25 | 0.53 | 0.03 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | ARMH4 | 145407 | 19846 | 1.24 | 0.57 | 0.11 | 5.62801779127055e-184 | 1.8963043145907e-179 |
74 | 13 | Pod | Podocyte | wk16 | SEMA3B | 7869 | 10724 | 1.24 | 0.66 | 0.1 | 3.64165330070741e-256 | 1.22701866314036e-251 |
74 | 13 | Pod | Podocyte | wk16 | DDN | 23109 | 24458 | 1.24 | 0.48 | 0.005 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | CLDN5 | 7122 | 2047 | 1.24 | 0.74 | 0.16 | 2.97161572285553e-206 | 1.00125620165894e-201 |
74 | 13 | Pod | Podocyte | wk16 | TGFBR3 | 7049 | 11774 | 1.23 | 0.57 | 0.07 | 1.54513512811261e-255 | 5.20617830066262e-251 |
74 | 13 | Pod | Podocyte | wk16 | SRGAP1 | 57522 | 17382 | 1.23 | 0.69 | 0.18 | 5.24216569533563e-178 | 1.76629530938639e-173 |
74 | 13 | Pod | Podocyte | wk16 | ST3GAL6 | 10402 | 18080 | 1.22 | 0.54 | 0.04 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | CITED2 | 10370 | 1987 | 1.19 | 0.9 | 0.51 | 3.12951823136354e-133 | 1.05445987287563e-128 |
74 | 13 | Pod | Podocyte | wk16 | RAMP1 | 10267 | 9843 | 1.19 | 0.51 | 0.04 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | BCAM | 4059 | 6722 | 1.18 | 0.89 | 0.45 | 1.24721832335922e-147 | 4.20237741872656e-143 |
74 | 13 | Pod | Podocyte | wk16 | RGS3 | 5998 | 9999 | 1.16 | 0.63 | 0.18 | 2.14510797447033e-147 | 7.22772680918033e-143 |
74 | 13 | Pod | Podocyte | wk16 | SLC9A3R2 | 9351 | 11076 | 1.14 | 0.7 | 0.19 | 6.66912219741089e-170 | 2.24709403319563e-165 |
74 | 13 | Pod | Podocyte | wk16 | SPOCK2 | 9806 | 13564 | 1.14 | 0.6 | 0.16 | 2.85499595759551e-139 | 9.61962337952231e-135 |
74 | 13 | Pod | Podocyte | wk16 | TJP1 | 7082 | 11827 | 1.14 | 0.72 | 0.27 | 1.46079978877364e-136 | 4.92201880829389e-132 |
74 | 13 | Pod | Podocyte | wk16 | TUBB2A | 7280 | 12412 | 1.12 | 0.63 | 0.22 | 4.25172214575154e-116 | 1.43257525978952e-111 |
74 | 13 | Pod | Podocyte | wk16 | NPHS1 | 4868 | 7908 | 1.12 | 0.56 | 0.05 | 1.59501758136747e-292 | 5.37425223865955e-288 |
74 | 13 | Pod | Podocyte | wk16 | TSC22D3 | 1831 | 3051 | 1.11 | 0.79 | 0.37 | 6.28571525293404e-130 | 2.11790889732359e-125 |
74 | 13 | Pod | Podocyte | wk16 | GSN | 2934 | 4620 | 1.1 | 0.64 | 0.16 | 3.33820851132196e-163 | 1.12477597580482e-158 |
74 | 13 | Pod | Podocyte | wk16 | ST6GALNAC3 | 256435 | 19343 | 1.1 | 0.48 | 0.05 | 8.91454689955325e-222 | 3.00366743233547e-217 |
74 | 13 | Pod | Podocyte | wk16 | CXCL12 | 6387 | 10672 | 1.09 | 0.61 | 0.23 | 2.71217554075239e-87 | 9.1384042670111e-83 |
74 | 13 | Pod | Podocyte | wk16 | TYRO3 | 7301 | 12446 | 1.03 | 0.51 | 0.1 | 8.82450148841878e-150 | 2.97332753150782e-145 |
74 | 13 | Pod | Podocyte | wk16 | CRB2 | 286204 | 18688 | 1.03 | 0.48 | 0.07 | 1.27973754248017e-173 | 4.31194767563267e-169 |
74 | 13 | Pod | Podocyte | wk16 | CD151 | 977 | 1630 | 1.02 | 0.81 | 0.46 | 4.18303903626849e-109 | 1.40943317288031e-104 |
74 | 13 | Pod | Podocyte | wk16 | SNCA | 6622 | 11138 | 1.01 | 0.57 | 0.15 | 2.42305798985128e-136 | 8.1642515910049e-132 |
74 | 13 | Pod | Podocyte | wk16 | COL4A4 | 1286 | 2206 | 1 | 0.41 | 0.01 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | SYNPO | 11346 | 30672 | 1 | 0.46 | 0.03 | 1.10733942133284e-273 | 3.73106944623888e-269 |
74 | 13 | Pod | Podocyte | wk16 | DUSP23 | 54935 | 21480 | 0.98 | 0.5 | 0.17 | 1.77976541470225e-90 | 5.99674158829778e-86 |
74 | 13 | Pod | Podocyte | wk16 | RIPOR1 | 79567 | 25836 | 0.97 | 0.44 | 0.04 | 1.12086950648055e-211 | 3.77665771513556e-207 |
74 | 13 | Pod | Podocyte | wk16 | ACTN4 | 81 | 166 | 0.96 | 0.68 | 0.34 | 1.66384560204042e-89 | 5.60616137151499e-85 |
74 | 13 | Pod | Podocyte | wk16 | DACH1 | 1602 | 2663 | 0.95 | 0.66 | 0.29 | 6.38460813407714e-96 | 2.15122986469595e-91 |
74 | 13 | Pod | Podocyte | wk16 | KLRB1 | 3820 | 6373 | 0.94 | 0.39 | 0.02 | 3.54623362577548e-290 | 1.19486795786879e-285 |
74 | 13 | Pod | Podocyte | wk16 | ITM2B | 9445 | 6174 | 0.93 | 0.97 | 0.9 | 3.19592486445959e-109 | 1.07683492383102e-104 |
74 | 13 | Pod | Podocyte | wk16 | SELENOP | 6414 | 10751 | 0.93 | 0.84 | 0.47 | 2.28103611745509e-102 | 7.68572309415319e-98 |
74 | 13 | Pod | Podocyte | wk16 | NECTIN2 | 5819 | 9707 | 0.92 | 0.73 | 0.37 | 1.34193142878217e-94 | 4.52150375613863e-90 |
74 | 13 | Pod | Podocyte | wk16 | LEPROT | 54741 | 29477 | 0.92 | 0.79 | 0.43 | 1.8918098514947e-102 | 6.37426411362625e-98 |
74 | 13 | Pod | Podocyte | wk16 | ZFP36L2 | 678 | 1108 | 0.91 | 0.79 | 0.49 | 2.54224330310791e-81 | 8.56583458549178e-77 |
74 | 13 | Pod | Podocyte | wk16 | PLCE1 | 51196 | 17175 | 0.91 | 0.41 | 0.05 | 1.14770247110525e-185 | 3.86706870614202e-181 |
74 | 13 | Pod | Podocyte | wk16 | NTNG1 | 22854 | 23319 | 0.9 | 0.33 | 0.006 | 0 | 0 |
74 | 13 | Pod | Podocyte | wk16 | WT1-AS | 51352 | 18135 | 0.9 | 0.52 | 0.14 | 1.44226270933104e-116 | 4.85955997281999e-112 |
74 | 13 | Pod | Podocyte | wk16 | ARHGEF3 | 50650 | 683 | 0.89 | 0.4 | 0.05 | 1.86800694871358e-157 | 6.29406261299555e-153 |
74 | 13 | Pod | Podocyte | wk16 | AIF1L | 83543 | 28904 | 0.88 | 0.58 | 0.23 | 2.41021607204576e-86 | 8.12098203315097e-82 |
74 | 13 | Pod | Podocyte | wk16 | FOXC2 | 2303 | 3801 | 0.88 | 0.69 | 0.31 | 2.4723307520237e-82 | 8.33027123586867e-78 |
74 | 13 | Pod | Podocyte | wk16 | VAMP2 | 6844 | 12643 | 0.87 | 0.78 | 0.44 | 1.0992389629155e-91 | 3.70377576164749e-87 |
74 | 13 | Pod | Podocyte | wk16 | CD59 | 966 | 1689 | 0.87 | 0.74 | 0.44 | 3.13506885488524e-78 | 1.05633009996503e-73 |
74 | 13 | Pod | Podocyte | wk16 | VASN | 114990 | 18517 | 0.85 | 0.44 | 0.12 | 3.26556696351219e-85 | 1.1003001326858e-80 |
74 | 13 | Pod | Podocyte | wk16 | ANXA1 | 301 | 533 | 0.85 | 0.23 | 0.03 | 2.62993043710105e-86 | 8.86128761476829e-82 |
74 | 13 | Pod | Podocyte | wk16 | PARD3B | 117583 | 14446 | 0.85 | 0.41 | 0.08 | 3.07563812677628e-110 | 1.036305510436e-105 |
74 | 13 | Pod | Podocyte | wk16 | TMEM106B | 54664 | 22407 | 0.85 | 0.53 | 0.19 | 1.08797117252337e-80 | 3.66581006870025e-76 |
74 | 13 | Pod | Podocyte | wk16 | CTSD | 1509 | 2529 | 0.84 | 0.65 | 0.32 | 7.93568679542368e-77 | 2.67385030885005e-72 |
74 | 13 | Pod | Podocyte | wk16 | EIF3M | 10480 | 24460 | 0.84 | 0.92 | 0.7 | 6.83028924742497e-92 | 2.30139765902737e-87 |
74 | 13 | Pod | Podocyte | wk16 | NDRG2 | 57447 | 14460 | 0.83 | 0.41 | 0.15 | 5.02586436365651e-59 | 1.69341473869042e-54 |
74 | 13 | Pod | Podocyte | wk16 | EFNB2 | 1948 | 3227 | 0.82 | 0.67 | 0.33 | 3.80178199827118e-74 | 1.28097242649749e-69 |
74 | 13 | Pod | Podocyte | wk16 | SAMD11 | 148398 | 28706 | 0.81 | 0.5 | 0.16 | 4.72508432528569e-84 | 1.59206991256176e-79 |
74 | 13 | Pod | Podocyte | wk16 | FOXC1 | 2296 | 3800 | 0.81 | 0.53 | 0.18 | 1.56603916501381e-87 | 5.27661236259754e-83 |
74 | 13 | Pod | Podocyte | wk16 | HMGN3 | 9324 | 12312 | 0.8 | 0.94 | 0.74 | 3.10862569982283e-99 | 1.0474203432983e-94 |
74 | 13 | Pod | Podocyte | wk16 | RBMS1 | 5937 | 9907 | 0.8 | 0.73 | 0.43 | 1.06335778706778e-73 | 3.58287772774619e-69 |
74 | 13 | Pod | Podocyte | wk16 | TMEM150C | 441027 | 37263 | 0.8 | 0.37 | 0.06 | 5.06038827305741e-126 | 1.70504722472396e-121 |
74 | 13 | Pod | Podocyte | wk16 | SEPTIN11 | 55752 | 25589 | 0.8 | 0.84 | 0.51 | 1.89580178312676e-85 | 6.3877145280673e-81 |
74 | 13 | Pod | Podocyte | wk16 | PLA2R1 | 22925 | 9042 | 0.79 | 0.31 | 0.01 | 4.31671738743538e-211 | 1.45447475652248e-206 |
74 | 13 | Pod | Podocyte | wk16 | VWA1 | 64856 | 30910 | 0.79 | 0.39 | 0.11 | 2.66987887684626e-70 | 8.9958898876458e-66 |
74 | 13 | Pod | Podocyte | wk16 | LTBP4 | 8425 | 6717 | 0.79 | 0.61 | 0.26 | 1.4195262455636e-72 | 4.78295173180198e-68 |
74 | 13 | Pod | Podocyte | wk16 | PDE4DIP | 9659 | 15580 | 0.78 | 0.38 | 0.07 | 1.26485143941782e-114 | 4.2617904399744e-110 |
74 | 13 | Pod | Podocyte | wk16 | ENPEP | 2028 | 3355 | 0.78 | 0.36 | 0.05 | 2.03834759235302e-128 | 6.86800837767426e-124 |
74 | 13 | Pod | Podocyte | wk16 | TAGLN2 | 8407 | 11554 | 0.78 | 0.53 | 0.26 | 2.35321069080635e-52 | 7.9289081016029e-48 |
74 | 13 | Pod | Podocyte | wk16 | CKB | 1152 | 1991 | 0.77 | 0.68 | 0.37 | 1.57785870160984e-64 | 5.3164371092042e-60 |