Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: wk13
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
73 | 13 | Pod | Podocyte | wk13 | PODXL | 5420 | 9171 | 2.49 | 0.99 | 0.18 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | NPHS2 | 7827 | 13394 | 2.45 | 0.97 | 0.12 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | SOST | 50964 | 13771 | 2.25 | 0.87 | 0.11 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | TPPP3 | 51673 | 24162 | 2.25 | 0.92 | 0.12 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | PTPRO | 5800 | 9678 | 2.24 | 0.93 | 0.08 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | MYL9 | 10398 | 15754 | 2.21 | 0.94 | 0.25 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | CLIC5 | 53405 | 13517 | 2.17 | 0.91 | 0.1 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | MAFB | 9935 | 6408 | 2.06 | 0.99 | 0.25 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | MME | 4311 | 7154 | 2.05 | 0.84 | 0.1 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | THSD7A | 221981 | 22207 | 2.03 | 0.88 | 0.12 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | TCF21 | 6943 | 11632 | 2.03 | 0.97 | 0.21 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | AIF1 | 199 | 352 | 1.95 | 0.75 | 0.05 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | S100A6 | 6277 | 10496 | 1.94 | 0.88 | 0.24 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | MPP5 | 64398 | 18669 | 1.93 | 0.87 | 0.14 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | MXRA8 | 54587 | 7542 | 1.88 | 0.96 | 0.29 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | SPARC | 6678 | 11219 | 1.86 | 1 | 0.51 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | ST6GALNAC3 | 256435 | 19343 | 1.86 | 0.76 | 0.06 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | ANXA2 | 302 | 537 | 1.84 | 0.95 | 0.37 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | BST2 | 684 | 1119 | 1.84 | 0.88 | 0.17 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | PDLIM2 | 64236 | 13992 | 1.82 | 0.82 | 0.14 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | DDN | 23109 | 24458 | 1.82 | 0.64 | 0.02 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | TNNI1 | 7135 | 11945 | 1.82 | 0.75 | 0.12 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | ADM | 133 | 259 | 1.81 | 0.74 | 0.12 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | GADD45A | 1647 | 4095 | 1.78 | 0.92 | 0.33 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | MRGPRF | 116535 | 24828 | 1.73 | 0.7 | 0.04 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | CXCL12 | 6387 | 10672 | 1.72 | 0.61 | 0.16 | 1.99118018218176e-201 | 6.70908250584321e-197 |
73 | 13 | Pod | Podocyte | wk13 | NES | 10763 | 7756 | 1.67 | 0.83 | 0.13 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | SEMA3B | 7869 | 10724 | 1.64 | 0.83 | 0.16 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | PTH1R | 5745 | 9608 | 1.58 | 0.62 | 0.07 | 2.93543176815222e-286 | 9.89064379961209e-282 |
73 | 13 | Pod | Podocyte | wk13 | ST3GAL6 | 10402 | 18080 | 1.58 | 0.71 | 0.07 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | CPXM1 | 56265 | 15771 | 1.57 | 0.85 | 0.29 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | WT1 | 7490 | 12796 | 1.57 | 0.96 | 0.34 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | TGFBR3 | 7049 | 11774 | 1.52 | 0.66 | 0.07 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | SPOCK2 | 9806 | 13564 | 1.49 | 0.71 | 0.16 | 1.72235874654829e-278 | 5.8033155606198e-274 |
73 | 13 | Pod | Podocyte | wk13 | NPHS1 | 4868 | 7908 | 1.45 | 0.73 | 0.1 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | SHISA2 | 387914 | 20366 | 1.44 | 0.62 | 0.15 | 3.94703279714422e-208 | 1.32991323066977e-203 |
73 | 13 | Pod | Podocyte | wk13 | TYRO3 | 7301 | 12446 | 1.43 | 0.73 | 0.14 | 9.76817397188783e-306 | 3.29128853808789e-301 |
73 | 13 | Pod | Podocyte | wk13 | TNNT2 | 7139 | 11949 | 1.43 | 0.59 | 0.08 | 3.59505308940305e-246 | 1.21131718794347e-241 |
73 | 13 | Pod | Podocyte | wk13 | GSN | 2934 | 4620 | 1.42 | 0.71 | 0.12 | 1.26931081215399e-303 | 4.27681585047165e-299 |
73 | 13 | Pod | Podocyte | wk13 | CLDN5 | 7122 | 2047 | 1.41 | 0.79 | 0.14 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | TUBB2A | 7280 | 12412 | 1.39 | 0.66 | 0.18 | 2.56218603771839e-230 | 8.63302963548833e-226 |
73 | 13 | Pod | Podocyte | wk13 | ARMH4 | 145407 | 19846 | 1.39 | 0.61 | 0.09 | 1.33298157919868e-256 | 4.49134813295204e-252 |
73 | 13 | Pod | Podocyte | wk13 | VASN | 114990 | 18517 | 1.36 | 0.73 | 0.19 | 2.01982208213507e-275 | 6.80558852354591e-271 |
73 | 13 | Pod | Podocyte | wk13 | ARHGEF3 | 50650 | 683 | 1.34 | 0.63 | 0.09 | 4.01786747003756e-270 | 1.35378026535445e-265 |
73 | 13 | Pod | Podocyte | wk13 | KLRB1 | 3820 | 6373 | 1.33 | 0.5 | 0.04 | 6.24966113449841e-225 | 2.1057608226579e-220 |
73 | 13 | Pod | Podocyte | wk13 | NTNG1 | 22854 | 23319 | 1.32 | 0.47 | 0.01 | 2.8937464241428e-246 | 9.75018920150676e-242 |
73 | 13 | Pod | Podocyte | wk13 | LTBP4 | 8425 | 6717 | 1.32 | 0.64 | 0.13 | 4.20833708390497e-244 | 1.41795709705094e-239 |
73 | 13 | Pod | Podocyte | wk13 | SELENOP | 6414 | 10751 | 1.3 | 0.91 | 0.44 | 8.11098473262522e-301 | 2.73291519581074e-296 |
73 | 13 | Pod | Podocyte | wk13 | SEPTIN11 | 55752 | 25589 | 1.29 | 0.85 | 0.36 | 1.03329781885205e-284 | 3.48159367084009e-280 |
73 | 13 | Pod | Podocyte | wk13 | RETREG1 | 54463 | 25964 | 1.28 | 0.59 | 0.08 | 4.26141262251136e-246 | 1.43584036902898e-241 |
73 | 13 | Pod | Podocyte | wk13 | ACTN4 | 81 | 166 | 1.27 | 0.72 | 0.25 | 2.906668896859e-232 | 9.7937301810767e-228 |
73 | 13 | Pod | Podocyte | wk13 | TSC22D3 | 1831 | 3051 | 1.27 | 0.85 | 0.36 | 1.94568033767166e-264 | 6.55577532975089e-260 |
73 | 13 | Pod | Podocyte | wk13 | RIPOR1 | 79567 | 25836 | 1.27 | 0.54 | 0.05 | 8.45562621185113e-246 | 2.84903869582112e-241 |
73 | 13 | Pod | Podocyte | wk13 | LOXL1 | 4016 | 6665 | 1.26 | 0.7 | 0.19 | 3.71368997600229e-234 | 1.25129070051421e-229 |
73 | 13 | Pod | Podocyte | wk13 | TMSB4X | 7114 | 11881 | 1.25 | 0.99 | 0.97 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | PLTP | 5360 | 9093 | 1.24 | 0.55 | 0.1 | 1.67326029642998e-206 | 5.63788324279116e-202 |
73 | 13 | Pod | Podocyte | wk13 | CRB2 | 286204 | 18688 | 1.23 | 0.58 | 0.11 | 1.82005298087559e-204 | 6.13248651376222e-200 |
73 | 13 | Pod | Podocyte | wk13 | VIM | 7431 | 12692 | 1.22 | 0.99 | 0.63 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | ENPEP | 2028 | 3355 | 1.19 | 0.59 | 0.12 | 3.26927664913764e-204 | 1.10155007416044e-199 |
73 | 13 | Pod | Podocyte | wk13 | SPINT2 | 10653 | 11247 | 1.14 | 0.97 | 0.69 | 0 | 0 |
73 | 13 | Pod | Podocyte | wk13 | DUSP1 | 1843 | 3064 | 1.14 | 0.78 | 0.38 | 1.43709093421243e-188 | 4.84213419373535e-184 |
73 | 13 | Pod | Podocyte | wk13 | SLC9A3R2 | 9351 | 11076 | 1.14 | 0.5 | 0.07 | 6.49307273354315e-191 | 2.18777592684003e-186 |
73 | 13 | Pod | Podocyte | wk13 | PLD3 | 23646 | 17158 | 1.12 | 0.77 | 0.37 | 2.56621605333639e-204 | 8.64660837011164e-200 |
73 | 13 | Pod | Podocyte | wk13 | HACD2 | 201562 | 9640 | 1.11 | 0.54 | 0.16 | 8.97937714655174e-152 | 3.02551133575914e-147 |
73 | 13 | Pod | Podocyte | wk13 | TAGLN2 | 8407 | 11554 | 1.11 | 0.58 | 0.17 | 4.27238678935714e-163 | 1.43953800480599e-158 |
73 | 13 | Pod | Podocyte | wk13 | TJP1 | 7082 | 11827 | 1.1 | 0.62 | 0.2 | 2.11668537117616e-182 | 7.13195968964094e-178 |
73 | 13 | Pod | Podocyte | wk13 | IQGAP2 | 10788 | 6111 | 1.1 | 0.51 | 0.08 | 5.16125463173597e-196 | 1.73903313561712e-191 |
73 | 13 | Pod | Podocyte | wk13 | TRAM2 | 9697 | 16855 | 1.1 | 0.5 | 0.09 | 9.32765314934809e-175 | 3.14285945214134e-170 |
73 | 13 | Pod | Podocyte | wk13 | SYNPO | 11346 | 30672 | 1.1 | 0.43 | 0.03 | 4.12799636253041e-186 | 1.390887094391e-181 |
73 | 13 | Pod | Podocyte | wk13 | SRGAP1 | 57522 | 17382 | 1.09 | 0.62 | 0.2 | 8.22152163896323e-184 | 2.77015950103227e-179 |
73 | 13 | Pod | Podocyte | wk13 | P3H2 | 55214 | 19317 | 1.08 | 0.55 | 0.12 | 6.36534229306467e-184 | 2.14473843222521e-179 |
73 | 13 | Pod | Podocyte | wk13 | AXL | 558 | 905 | 1.08 | 0.42 | 0.1 | 3.39383875022548e-124 | 1.14352002850097e-119 |
73 | 13 | Pod | Podocyte | wk13 | NEAT1 | 283131 | 30815 | 1.08 | 0.75 | 0.3 | 6.43605396136288e-202 | 2.16856402174161e-197 |
73 | 13 | Pod | Podocyte | wk13 | CHI3L1 | 1116 | 1932 | 1.06 | 0.33 | 0.02 | 3.14444561458687e-145 | 1.0594895053789e-140 |
73 | 13 | Pod | Podocyte | wk13 | EMP3 | 2014 | 3335 | 1.06 | 0.44 | 0.05 | 4.26551992005424e-178 | 1.43722428186308e-173 |
73 | 13 | Pod | Podocyte | wk13 | RAMP1 | 10267 | 9843 | 1.05 | 0.4 | 0.03 | 4.40868718215512e-172 | 1.48546305915535e-167 |
73 | 13 | Pod | Podocyte | wk13 | ITM2B | 9445 | 6174 | 1.05 | 0.98 | 0.94 | 1.68628686291921e-237 | 5.68177495591998e-233 |
73 | 13 | Pod | Podocyte | wk13 | MYH9 | 4627 | 7579 | 1.05 | 0.56 | 0.17 | 5.78952182953045e-162 | 1.95072148524199e-157 |
73 | 13 | Pod | Podocyte | wk13 | F3 | 2152 | 3541 | 1.04 | 0.45 | 0.1 | 1.00452995632453e-133 | 3.38466323483987e-129 |
73 | 13 | Pod | Podocyte | wk13 | PC | 5091 | 8636 | 1.03 | 0.43 | 0.05 | 6.73862792213824e-168 | 2.27051329208526e-163 |
73 | 13 | Pod | Podocyte | wk13 | DUSP23 | 54935 | 21480 | 1.03 | 0.52 | 0.17 | 1.53179085086992e-131 | 5.16121609292109e-127 |
73 | 13 | Pod | Podocyte | wk13 | LEPROT | 54741 | 29477 | 1.02 | 0.8 | 0.44 | 1.16608305934359e-202 | 3.9290002601523e-198 |
73 | 13 | Pod | Podocyte | wk13 | ANXA1 | 301 | 533 | 1.02 | 0.22 | 0.01 | 1.460579185937e-96 | 4.92127550909612e-92 |
73 | 13 | Pod | Podocyte | wk13 | PON2 | 5445 | 9205 | 1.01 | 0.76 | 0.38 | 2.10143767864577e-180 | 7.08058411442905e-176 |
73 | 13 | Pod | Podocyte | wk13 | SAMD11 | 148398 | 28706 | 1.01 | 0.48 | 0.1 | 1.4921760308988e-150 | 5.02773791851042e-146 |
73 | 13 | Pod | Podocyte | wk13 | GOLIM4 | 27333 | 15448 | 1.01 | 0.61 | 0.28 | 4.99638676264495e-124 | 1.68348255580559e-119 |
73 | 13 | Pod | Podocyte | wk13 | HEXIM1 | 10614 | 24953 | 1 | 0.62 | 0.27 | 3.29212598977076e-139 | 1.10924893099336e-134 |
73 | 13 | Pod | Podocyte | wk13 | VAMP2 | 6844 | 12643 | 0.99 | 0.73 | 0.39 | 6.69270382398276e-165 | 2.25503962645275e-160 |
73 | 13 | Pod | Podocyte | wk13 | FGF1 | 2246 | 3665 | 0.99 | 0.34 | 0.009 | 6.41576106471373e-173 | 2.16172653314465e-168 |
73 | 13 | Pod | Podocyte | wk13 | G0S2 | 50486 | 30229 | 0.98 | 0.28 | 0.04 | 1.85645054969194e-98 | 6.25512448213201e-94 |
73 | 13 | Pod | Podocyte | wk13 | SDC2 | 6383 | 10659 | 0.97 | 0.8 | 0.48 | 2.94130287090606e-165 | 9.91042589323087e-161 |
73 | 13 | Pod | Podocyte | wk13 | VEGFA | 7422 | 12680 | 0.96 | 0.46 | 0.11 | 1.25606204826744e-134 | 4.23217546543231e-130 |
73 | 13 | Pod | Podocyte | wk13 | AIF1L | 83543 | 28904 | 0.96 | 0.74 | 0.35 | 1.96738709190343e-171 | 6.62891406745942e-167 |
73 | 13 | Pod | Podocyte | wk13 | CD151 | 977 | 1630 | 0.96 | 0.75 | 0.39 | 1.12198851692251e-178 | 3.78042810891872e-174 |
73 | 13 | Pod | Podocyte | wk13 | COL3A1 | 1281 | 2201 | 0.96 | 0.58 | 0.11 | 1.56762340014767e-187 | 5.28195028445757e-183 |
73 | 13 | Pod | Podocyte | wk13 | HTRA1 | 5654 | 9476 | 0.96 | 0.33 | 0.04 | 2.67325811684495e-127 | 9.00727589889738e-123 |
73 | 13 | Pod | Podocyte | wk13 | CTSL | 1514 | 2537 | 0.96 | 0.58 | 0.27 | 4.25936767018979e-108 | 1.43515134279375e-103 |
73 | 13 | Pod | Podocyte | wk13 | AQP3 | 360 | 636 | 0.95 | 0.4 | 0.06 | 2.51536968502311e-138 | 8.47528661671687e-134 |
73 | 13 | Pod | Podocyte | wk13 | WT1-AS | 51352 | 18135 | 0.95 | 0.51 | 0.12 | 1.77714087304402e-145 | 5.98789845763452e-141 |
73 | 13 | Pod | Podocyte | wk13 | BCAM | 4059 | 6722 | 0.94 | 0.65 | 0.35 | 1.87492222341111e-106 | 6.31736293956138e-102 |