Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: wk09
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:58
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71 | 4 | ICa | Interstitial cells a | wk09 | COL1A1 | 1277 | 2197 | 2.4 | 1 | 0.2 | 2.2394068814415E-10 | 7.5454575463291E-6 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | COL3A1 | 1281 | 2201 | 2.25 | 1 | 0.26 | 3.0259188108143E-9 | 0.00010195530841158 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | IGFBP5 | 3488 | 5474 | 2.17 | 0.91 | 0.1 | 4.9362383335449E-11 | 1.6632161441046E-6 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | CLDN11 | 5010 | 8514 | 2.08 | 0.91 | 0.12 | 2.602017400901E-10 | 8.7672374305958E-6 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | COL1A2 | 1278 | 2198 | 2.08 | 1 | 0.21 | 4.8262627359858E-10 | 1.626160966263E-5 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | LGALS1 | 3956 | 6561 | 1.99 | 0.91 | 0.18 | 9.9154479076456E-9 | 0.00033409110180021 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | SULT1E1 | 6783 | 11377 | 1.9 | 0.83 | 0.09 | 3.6509487210959E-10 | 1.2301506620861E-5 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | MFAP4 | 4239 | 7035 | 1.82 | 0.91 | 0.12 | 7.7951027029727E-11 | 2.6264819047396E-6 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | PLAC9 | 219348 | 19255 | 1.67 | 0.83 | 0.04 | 3.494093899212E-13 | 1.1772999984005E-8 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | MGP | 4256 | 7060 | 1.63 | 0.66 | 0.02 | 1.2413076911218E-10 | 4.1824621344656E-6 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | AKAP12 | 9590 | 370 | 1.58 | 0.91 | 0.42 | 9.8771268835922E-7 | 0.03 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | CPE | 1363 | 2303 | 1.56 | 0.91 | 0.28 | 4.7525775652146E-8 | 0.0016013334848234 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | TGFBI | 7045 | 11771 | 1.54 | 0.91 | 0.08 | 2.7794407581895E-12 | 9.3650476906438E-8 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | POSTN | 10631 | 16953 | 1.4 | 0.91 | 0.05 | 7.4017367438083E-14 | 2.4939411784588E-9 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | CCL2 | 6347 | 10618 | 1.29 | 0.75 | 0.05 | 1.6517232744178E-10 | 5.5653164008233E-6 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | COL9A3 | 1299 | 2219 | 1.25 | 0.83 | 0.1 | 1.6935303074002E-9 | 5.7061810177541E-5 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | PCOLCE | 5118 | 8738 | 1.25 | 0.91 | 0.14 | 2.3313131870592E-9 | 7.8551266524771E-5 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | MATN2 | 4147 | 6908 | 1.11 | 0.75 | 0.04 | 3.0844226621953E-11 | 1.0392653718001E-6 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | COL16A1 | 1307 | 2193 | 1.11 | 0.75 | 0.02 | 1.7107266396737E-12 | 5.7641223397164E-8 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | CNN3 | 1266 | 2157 | 1.1 | 1 | 0.73 | 8.531030203631E-7 | 0.02 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | LIMA1 | 51474 | 24636 | 1.06 | 0.91 | 0.24 | 7.8602796824564E-8 | 0.0026484426362069 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | TPM2 | 7169 | 12011 | 1.04 | 0.91 | 0.21 | 4.2394273885177E-8 | 0.0014284326642871 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | MDFI | 4188 | 6967 | 1.03 | 0.83 | 0.18 | 9.4421235594133E-8 | 0.0031814291121087 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | OLFML3 | 56944 | 24956 | 1.03 | 0.58 | 0.06 | 1.1972235496762E-6 | 0.04 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | NFIB | 4781 | 7785 | 1.02 | 0.83 | 0.1 | 2.0985087439348E-9 | 7.0707153618139E-5 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | OGN | 4969 | 8126 | 1.02 | 0.58 | 0.01 | 1.8660468936933E-10 | 6.2874584036103E-6 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | APCDD1 | 147495 | 15718 | 1.02 | 0.66 | 0.02 | 1.0720984698355E-10 | 3.6123285842637E-6 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | CREB5 | 9586 | 16844 | 0.98 | 0.66 | 0.05 | 6.6069106177861E-9 | 0.00022261324635568 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | NFIA | 4774 | 7784 | 0.97 | 0.75 | 0.08 | 9.3944105046857E-9 | 0.00031653526754488 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | COL6A2 | 1292 | 2212 | 0.97 | 0.91 | 0.2 | 1.2654591901289E-7 | 0.0042638381952204 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | TGM2 | 7052 | 11778 | 0.96 | 0.66 | 0 | 1.9211413939626E-13 | 6.4730938128177E-9 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | LRRC17 | 10234 | 16895 | 0.94 | 0.58 | 0.06 | 5.1574204925829E-7 | 0.01 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | FHL2 | 2274 | 3703 | 0.89 | 0.66 | 0.04 | 1.1557119960908E-9 | 3.8940559996285E-5 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | DNM3OS | 100628315 | 41228 | 0.84 | 0.58 | 0.01 | 1.8660468936933E-10 | 6.2874584036103E-6 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | ELN | 2006 | 3327 | 0.82 | 0.66 | 0 | 1.9211413939626E-13 | 6.4730938128177E-9 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | LHFPL6 | 10186 | 6586 | 0.8 | 0.58 | 0.06 | 7.0943661818057E-7 | 0.02 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | COL6A3 | 1293 | 2213 | 0.8 | 0.83 | 0.12 | 8.5396977038232E-8 | 0.0028773657443262 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | MOXD1 | 26002 | 21063 | 0.77 | 0.75 | 0.05 | 4.907468766432E-10 | 1.6535225261616E-5 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | C11orf96 | 387763 | 38675 | 0.76 | 0.5 | 0.01 | 1.0164643344469E-8 | 0.00034248749284855 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | ISLR | 3671 | 6133 | 0.75 | 0.41 | 0 | 1.1537227892763E-8 | 0.00038873535661874 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | EPB41L2 | 2037 | 3379 | 0.74 | 0.83 | 0.16 | 4.3274759646919E-7 | 0.01 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | S1PR3 | 1903 | 3167 | 0.7 | 0.66 | 0.08 | 1.4223507992825E-7 | 0.0047924687831026 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | TBX18 | 9096 | 11595 | 0.68 | 0.58 | 0.02 | 5.8121543073244E-9 | 0.00019583472723099 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | CAVIN1 | 284119 | 9688 | 0.67 | 0.58 | 0.04 | 6.2382341295371E-8 | 0.0021019106076062 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | DOK5 | 55816 | 16173 | 0.66 | 0.5 | 0.02 | 1.584527173081E-7 | 0.005338905856979 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | PAMR1 | 25891 | 24554 | 0.65 | 0.5 | 0.04 | 7.4686416679429E-7 | 0.02 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | CYTL1 | 54360 | 24435 | 0.65 | 0.58 | 0 | 8.085942936415E-12 | 2.7244776129957E-7 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | NUPR1 | 26471 | 29990 | 0.65 | 0.5 | 0 | 3.1609651591455E-10 | 1.0650556007225E-5 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | HIC1 | 3090 | 4909 | 0.64 | 0.58 | 0.01 | 3.0089991440895E-10 | 1.0138521716095E-5 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | TINAGL1 | 64129 | 19168 | 0.58 | 0.58 | 0.04 | 7.0611032118301E-8 | 0.002379168116194 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | LOX | 4015 | 6664 | 0.58 | 0.58 | 0.05 | 9.8492356437507E-8 | 0.0033186014578054 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | PLA2G4A | 5321 | 9035 | 0.55 | 0.33 | 0 | 3.9606598991918E-7 | 0.01 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | EMCN | 51705 | 16041 | 0.5 | 0.75 | 0.08 | 1.8118083400293E-7 | 0.0061047070208948 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | ACTG2 | 72 | 145 | 0.5 | 0.33 | 0 | 3.9606598991918E-7 | 0.01 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | NKD2 | 85409 | 17046 | 0.5 | 0.5 | 0.04 | 1.3494972639489E-6 | 0.04 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | RPL10 | 6134 | 10298 | 0.5 | 1 | 1 | 2.9476994769847E-7 | 0.0099319786177523 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | RARRES1 | 5918 | 9867 | 0.44 | 0.41 | 0.01 | 3.6612524084815E-7 | 0.01 |
| 71 | 4 | ICa | Interstitial cells a | wk09 | PRRX1 | 5396 | 9142 | 0.38 | 0.41 | 0.01 | 5.6822857105854E-7 | 0.01 |