Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: wk09
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:58
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
71 | 4 | ICa | Interstitial cells a | wk09 | COL1A1 | 1277 | 2197 | 2.4 | 1 | 0.2 | 2.23940688144152e-10 | 7.54545754632905e-06 |
71 | 4 | ICa | Interstitial cells a | wk09 | COL3A1 | 1281 | 2201 | 2.25 | 1 | 0.26 | 3.02591881081432e-09 | 0.000101955308411578 |
71 | 4 | ICa | Interstitial cells a | wk09 | IGFBP5 | 3488 | 5474 | 2.17 | 0.91 | 0.1 | 4.93623833354495e-11 | 1.66321614410463e-06 |
71 | 4 | ICa | Interstitial cells a | wk09 | CLDN11 | 5010 | 8514 | 2.08 | 0.91 | 0.12 | 2.60201740090099e-10 | 8.7672374305958e-06 |
71 | 4 | ICa | Interstitial cells a | wk09 | COL1A2 | 1278 | 2198 | 2.08 | 1 | 0.21 | 4.82626273598576e-10 | 1.62616096626304e-05 |
71 | 4 | ICa | Interstitial cells a | wk09 | LGALS1 | 3956 | 6561 | 1.99 | 0.91 | 0.18 | 9.9154479076456e-09 | 0.000334091101800211 |
71 | 4 | ICa | Interstitial cells a | wk09 | SULT1E1 | 6783 | 11377 | 1.9 | 0.83 | 0.09 | 3.6509487210959e-10 | 1.23015066208605e-05 |
71 | 4 | ICa | Interstitial cells a | wk09 | MFAP4 | 4239 | 7035 | 1.82 | 0.91 | 0.12 | 7.79510270297273e-11 | 2.62648190473963e-06 |
71 | 4 | ICa | Interstitial cells a | wk09 | PLAC9 | 219348 | 19255 | 1.67 | 0.83 | 0.04 | 3.49409389921201e-13 | 1.17729999840049e-08 |
71 | 4 | ICa | Interstitial cells a | wk09 | MGP | 4256 | 7060 | 1.63 | 0.66 | 0.02 | 1.24130769112175e-10 | 4.18246213446564e-06 |
71 | 4 | ICa | Interstitial cells a | wk09 | AKAP12 | 9590 | 370 | 1.58 | 0.91 | 0.42 | 9.87712688359216e-07 | 0.03 |
71 | 4 | ICa | Interstitial cells a | wk09 | CPE | 1363 | 2303 | 1.56 | 0.91 | 0.28 | 4.75257756521464e-08 | 0.00160133348482342 |
71 | 4 | ICa | Interstitial cells a | wk09 | TGFBI | 7045 | 11771 | 1.54 | 0.91 | 0.08 | 2.77944075818953e-12 | 9.36504769064379e-08 |
71 | 4 | ICa | Interstitial cells a | wk09 | POSTN | 10631 | 16953 | 1.4 | 0.91 | 0.05 | 7.4017367438083e-14 | 2.49394117845877e-09 |
71 | 4 | ICa | Interstitial cells a | wk09 | CCL2 | 6347 | 10618 | 1.29 | 0.75 | 0.05 | 1.65172327441779e-10 | 5.56531640082331e-06 |
71 | 4 | ICa | Interstitial cells a | wk09 | COL9A3 | 1299 | 2219 | 1.25 | 0.83 | 0.1 | 1.69353030740017e-09 | 5.70618101775413e-05 |
71 | 4 | ICa | Interstitial cells a | wk09 | PCOLCE | 5118 | 8738 | 1.25 | 0.91 | 0.14 | 2.33131318705916e-09 | 7.85512665247714e-05 |
71 | 4 | ICa | Interstitial cells a | wk09 | MATN2 | 4147 | 6908 | 1.11 | 0.75 | 0.04 | 3.08442266219529e-11 | 1.03926537180008e-06 |
71 | 4 | ICa | Interstitial cells a | wk09 | COL16A1 | 1307 | 2193 | 1.11 | 0.75 | 0.02 | 1.71072663967366e-12 | 5.76412233971642e-08 |
71 | 4 | ICa | Interstitial cells a | wk09 | CNN3 | 1266 | 2157 | 1.1 | 1 | 0.73 | 8.53103020363102e-07 | 0.02 |
71 | 4 | ICa | Interstitial cells a | wk09 | LIMA1 | 51474 | 24636 | 1.06 | 0.91 | 0.24 | 7.86027968245636e-08 | 0.00264844263620685 |
71 | 4 | ICa | Interstitial cells a | wk09 | TPM2 | 7169 | 12011 | 1.04 | 0.91 | 0.21 | 4.23942738851766e-08 | 0.00142843266428714 |
71 | 4 | ICa | Interstitial cells a | wk09 | MDFI | 4188 | 6967 | 1.03 | 0.83 | 0.18 | 9.44212355941328e-08 | 0.00318142911210871 |
71 | 4 | ICa | Interstitial cells a | wk09 | OLFML3 | 56944 | 24956 | 1.03 | 0.58 | 0.06 | 1.1972235496762e-06 | 0.04 |
71 | 4 | ICa | Interstitial cells a | wk09 | NFIB | 4781 | 7785 | 1.02 | 0.83 | 0.1 | 2.09850874393479e-09 | 7.07071536181388e-05 |
71 | 4 | ICa | Interstitial cells a | wk09 | OGN | 4969 | 8126 | 1.02 | 0.58 | 0.01 | 1.86604689369333e-10 | 6.28745840361031e-06 |
71 | 4 | ICa | Interstitial cells a | wk09 | APCDD1 | 147495 | 15718 | 1.02 | 0.66 | 0.02 | 1.07209846983548e-10 | 3.61232858426368e-06 |
71 | 4 | ICa | Interstitial cells a | wk09 | CREB5 | 9586 | 16844 | 0.98 | 0.66 | 0.05 | 6.60691061778608e-09 | 0.000222613246355684 |
71 | 4 | ICa | Interstitial cells a | wk09 | NFIA | 4774 | 7784 | 0.97 | 0.75 | 0.08 | 9.39441050468566e-09 | 0.000316535267544878 |
71 | 4 | ICa | Interstitial cells a | wk09 | COL6A2 | 1292 | 2212 | 0.97 | 0.91 | 0.2 | 1.26545919012891e-07 | 0.00426383819522036 |
71 | 4 | ICa | Interstitial cells a | wk09 | TGM2 | 7052 | 11778 | 0.96 | 0.66 | 0 | 1.92114139396264e-13 | 6.47309381281773e-09 |
71 | 4 | ICa | Interstitial cells a | wk09 | LRRC17 | 10234 | 16895 | 0.94 | 0.58 | 0.06 | 5.15742049258286e-07 | 0.01 |
71 | 4 | ICa | Interstitial cells a | wk09 | FHL2 | 2274 | 3703 | 0.89 | 0.66 | 0.04 | 1.15571199609084e-09 | 3.89405599962847e-05 |
71 | 4 | ICa | Interstitial cells a | wk09 | DNM3OS | 100628315 | 41228 | 0.84 | 0.58 | 0.01 | 1.86604689369333e-10 | 6.28745840361031e-06 |
71 | 4 | ICa | Interstitial cells a | wk09 | ELN | 2006 | 3327 | 0.82 | 0.66 | 0 | 1.92114139396264e-13 | 6.47309381281773e-09 |
71 | 4 | ICa | Interstitial cells a | wk09 | LHFPL6 | 10186 | 6586 | 0.8 | 0.58 | 0.06 | 7.0943661818057e-07 | 0.02 |
71 | 4 | ICa | Interstitial cells a | wk09 | COL6A3 | 1293 | 2213 | 0.8 | 0.83 | 0.12 | 8.53969770382324e-08 | 0.0028773657443262 |
71 | 4 | ICa | Interstitial cells a | wk09 | MOXD1 | 26002 | 21063 | 0.77 | 0.75 | 0.05 | 4.90746876643201e-10 | 1.6535225261616e-05 |
71 | 4 | ICa | Interstitial cells a | wk09 | C11orf96 | 387763 | 38675 | 0.76 | 0.5 | 0.01 | 1.01646433444694e-08 | 0.000342487492848552 |
71 | 4 | ICa | Interstitial cells a | wk09 | ISLR | 3671 | 6133 | 0.75 | 0.41 | 0 | 1.15372278927626e-08 | 0.000388735356618744 |
71 | 4 | ICa | Interstitial cells a | wk09 | EPB41L2 | 2037 | 3379 | 0.74 | 0.83 | 0.16 | 4.32747596469191e-07 | 0.01 |
71 | 4 | ICa | Interstitial cells a | wk09 | S1PR3 | 1903 | 3167 | 0.7 | 0.66 | 0.08 | 1.42235079928254e-07 | 0.0047924687831026 |
71 | 4 | ICa | Interstitial cells a | wk09 | TBX18 | 9096 | 11595 | 0.68 | 0.58 | 0.02 | 5.81215430732436e-09 | 0.000195834727230987 |
71 | 4 | ICa | Interstitial cells a | wk09 | CAVIN1 | 284119 | 9688 | 0.67 | 0.58 | 0.04 | 6.23823412953714e-08 | 0.00210191060760625 |
71 | 4 | ICa | Interstitial cells a | wk09 | DOK5 | 55816 | 16173 | 0.66 | 0.5 | 0.02 | 1.58452717308098e-07 | 0.00533890585697905 |
71 | 4 | ICa | Interstitial cells a | wk09 | PAMR1 | 25891 | 24554 | 0.65 | 0.5 | 0.04 | 7.46864166794294e-07 | 0.02 |
71 | 4 | ICa | Interstitial cells a | wk09 | CYTL1 | 54360 | 24435 | 0.65 | 0.58 | 0 | 8.08594293641498e-12 | 2.72447761299566e-07 |
71 | 4 | ICa | Interstitial cells a | wk09 | NUPR1 | 26471 | 29990 | 0.65 | 0.5 | 0 | 3.16096515914555e-10 | 1.0650556007225e-05 |
71 | 4 | ICa | Interstitial cells a | wk09 | HIC1 | 3090 | 4909 | 0.64 | 0.58 | 0.01 | 3.00899914408947e-10 | 1.01385217160951e-05 |
71 | 4 | ICa | Interstitial cells a | wk09 | TINAGL1 | 64129 | 19168 | 0.58 | 0.58 | 0.04 | 7.06110321183007e-08 | 0.00237916811619402 |
71 | 4 | ICa | Interstitial cells a | wk09 | LOX | 4015 | 6664 | 0.58 | 0.58 | 0.05 | 9.84923564375075e-08 | 0.00331860145780538 |
71 | 4 | ICa | Interstitial cells a | wk09 | PLA2G4A | 5321 | 9035 | 0.55 | 0.33 | 0 | 3.96065989919182e-07 | 0.01 |
71 | 4 | ICa | Interstitial cells a | wk09 | EMCN | 51705 | 16041 | 0.5 | 0.75 | 0.08 | 1.81180834002933e-07 | 0.00610470702089481 |
71 | 4 | ICa | Interstitial cells a | wk09 | ACTG2 | 72 | 145 | 0.5 | 0.33 | 0 | 3.96065989919182e-07 | 0.01 |
71 | 4 | ICa | Interstitial cells a | wk09 | NKD2 | 85409 | 17046 | 0.5 | 0.5 | 0.04 | 1.3494972639489e-06 | 0.04 |
71 | 4 | ICa | Interstitial cells a | wk09 | RPL10 | 6134 | 10298 | 0.5 | 1 | 1 | 2.94769947698472e-07 | 0.00993197861775231 |
71 | 4 | ICa | Interstitial cells a | wk09 | RARRES1 | 5918 | 9867 | 0.44 | 0.41 | 0.01 | 3.66125240848146e-07 | 0.01 |
71 | 4 | ICa | Interstitial cells a | wk09 | PRRX1 | 5396 | 9142 | 0.38 | 0.41 | 0.01 | 5.68228571058543e-07 | 0.01 |