Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: combined
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70 | 8 | Mes | Mesangial cells | combined | REN | 5972 | 9958 | 4.99 | 0.33 | 0.007 | 7.2935713471034E-212 | 2.457495929693E-207 |
| 70 | 8 | Mes | Mesangial cells | combined | ACTA2 | 59 | 130 | 2.41 | 0.6 | 0.07 | 2.905172958412E-79 | 9.7886897660735E-75 |
| 70 | 8 | Mes | Mesangial cells | combined | GNAS | 2778 | 4392 | 2.35 | 0.93 | 0.67 | 2.3302460331258E-37 | 7.851530984014E-33 |
| 70 | 8 | Mes | Mesangial cells | combined | MGP | 4256 | 7060 | 2.19 | 0.66 | 0.02 | 0 | 0 |
| 70 | 8 | Mes | Mesangial cells | combined | MEF2C | 4208 | 6996 | 1.91 | 0.73 | 0.04 | 7.3431315288506E-181 | 2.4741947373309E-176 |
| 70 | 8 | Mes | Mesangial cells | combined | A2M | 2 | 7 | 1.76 | 0.61 | 0.03 | 1.2135485207986E-175 | 4.0889303859789E-171 |
| 70 | 8 | Mes | Mesangial cells | combined | TPM2 | 7169 | 12011 | 1.74 | 0.88 | 0.23 | 6.7654491489052E-60 | 2.2795504362321E-55 |
| 70 | 8 | Mes | Mesangial cells | combined | TINAGL1 | 64129 | 19168 | 1.55 | 0.6 | 0.05 | 2.4182448677085E-95 | 8.1480342572571E-91 |
| 70 | 8 | Mes | Mesangial cells | combined | ENG | 2022 | 3349 | 1.55 | 0.57 | 0.04 | 3.0985520953051E-112 | 1.0440261429921E-107 |
| 70 | 8 | Mes | Mesangial cells | combined | ANGPT2 | 285 | 485 | 1.53 | 0.57 | 0.03 | 4.419536185539E-156 | 1.4891185223555E-151 |
| 70 | 8 | Mes | Mesangial cells | combined | GATA3 | 2625 | 4172 | 1.51 | 0.51 | 0.04 | 5.8003384387704E-88 | 1.9543660335593E-83 |
| 70 | 8 | Mes | Mesangial cells | combined | KCNE4 | 23704 | 6244 | 1.48 | 0.57 | 0.03 | 9.6336092093255E-167 | 3.2459482869901E-162 |
| 70 | 8 | Mes | Mesangial cells | combined | FRZB | 2487 | 3959 | 1.45 | 0.56 | 0.03 | 3.1184942912948E-161 | 1.0507454665089E-156 |
| 70 | 8 | Mes | Mesangial cells | combined | CALD1 | 800 | 1441 | 1.4 | 0.97 | 0.54 | 9.0866670299769E-37 | 3.0616615890804E-32 |
| 70 | 8 | Mes | Mesangial cells | combined | NDUFA4L2 | 56901 | 29836 | 1.33 | 0.47 | 0.008 | 0 | 0 |
| 70 | 8 | Mes | Mesangial cells | combined | ADIRF | 10974 | 24043 | 1.32 | 0.21 | 0.01 | 3.5880854136719E-55 | 1.2089694992826E-50 |
| 70 | 8 | Mes | Mesangial cells | combined | SERPINI1 | 5274 | 8943 | 1.31 | 0.42 | 0.03 | 3.150696347222E-80 | 1.061595627233E-75 |
| 70 | 8 | Mes | Mesangial cells | combined | ISYNA1 | 51477 | 29821 | 1.29 | 0.71 | 0.28 | 8.2939227410679E-27 | 2.7945543283754E-22 |
| 70 | 8 | Mes | Mesangial cells | combined | TAGLN | 6876 | 11553 | 1.27 | 0.55 | 0.1 | 2.2186207172506E-36 | 7.4754206447042E-32 |
| 70 | 8 | Mes | Mesangial cells | combined | HSPB1 | 3315 | 5246 | 1.24 | 0.88 | 0.57 | 1.1919213080938E-24 | 4.0160596554913E-20 |
| 70 | 8 | Mes | Mesangial cells | combined | PDGFRB | 5159 | 8804 | 1.22 | 0.66 | 0.08 | 1.3075147483481E-76 | 4.405540193084E-72 |
| 70 | 8 | Mes | Mesangial cells | combined | BGN | 633 | 1044 | 1.17 | 0.65 | 0.19 | 6.2770628851663E-30 | 2.1149935685279E-25 |
| 70 | 8 | Mes | Mesangial cells | combined | RERGL | 79785 | 26213 | 1.16 | 0.28 | 0.002 | 0 | 0 |
| 70 | 8 | Mes | Mesangial cells | combined | LGALS1 | 3956 | 6561 | 1.09 | 0.82 | 0.24 | 5.9533356530945E-33 | 2.0059169149536E-28 |
| 70 | 8 | Mes | Mesangial cells | combined | CPE | 1363 | 2303 | 1.06 | 0.62 | 0.2 | 3.3880152640391E-26 | 1.1415578630653E-21 |
| 70 | 8 | Mes | Mesangial cells | combined | ENSG00000267042 | NULL | 1.04 | 0.47 | 0.02 | 7.69892239798E-142 | 2.5940749127754E-137 | |
| 70 | 8 | Mes | Mesangial cells | combined | MCAM | 4162 | 6934 | 1.02 | 0.44 | 0.04 | 8.1488708994009E-62 | 2.7456805608441E-57 |
| 70 | 8 | Mes | Mesangial cells | combined | FHL2 | 2274 | 3703 | 0.99 | 0.47 | 0.09 | 4.5333907051826E-31 | 1.5274806642042E-26 |
| 70 | 8 | Mes | Mesangial cells | combined | IGFBP7 | 3490 | 5476 | 0.98 | 0.91 | 0.56 | 5.153771223482E-23 | 1.73651167604E-18 |
| 70 | 8 | Mes | Mesangial cells | combined | HOPX | 84525 | 24961 | 0.98 | 0.38 | 0.04 | 4.5646113817496E-51 | 1.5380001589667E-46 |
| 70 | 8 | Mes | Mesangial cells | combined | PDLIM1 | 9124 | 2067 | 0.95 | 0.61 | 0.25 | 1.4120619015559E-19 | 4.7578013711023E-15 |
| 70 | 8 | Mes | Mesangial cells | combined | ELN | 2006 | 3327 | 0.95 | 0.16 | 0.02 | 1.9455429617348E-13 | 6.5553124552691E-9 |
| 70 | 8 | Mes | Mesangial cells | combined | EBF1 | 1879 | 3126 | 0.93 | 0.44 | 0.03 | 6.2753968149874E-81 | 2.1144322028419E-76 |
| 70 | 8 | Mes | Mesangial cells | combined | SOD3 | 6649 | 11181 | 0.92 | 0.29 | 0.01 | 1.4727281056883E-73 | 4.962210079306E-69 |
| 70 | 8 | Mes | Mesangial cells | combined | CD55 | 1604 | 2665 | 0.91 | 0.48 | 0.13 | 3.5795475079175E-22 | 1.2060927373177E-17 |
| 70 | 8 | Mes | Mesangial cells | combined | THY1 | 7070 | 11801 | 0.9 | 0.47 | 0.1 | 1.4863440499023E-28 | 5.0080876417409E-24 |
| 70 | 8 | Mes | Mesangial cells | combined | IGF2 | 3481 | 5466 | 0.9 | 0.84 | 0.51 | 4.1031633592717E-17 | 1.382519862273E-12 |
| 70 | 8 | Mes | Mesangial cells | combined | F2R | 2149 | 3537 | 0.88 | 0.42 | 0.14 | 6.1544489665583E-15 | 2.0736800347921E-10 |
| 70 | 8 | Mes | Mesangial cells | combined | GJA5 | 2702 | 4279 | 0.87 | 0.32 | 0.006 | 5.8363315300301E-230 | 1.9664935457283E-225 |
| 70 | 8 | Mes | Mesangial cells | combined | MECOM | 2122 | 3498 | 0.86 | 0.47 | 0.07 | 8.6405179730991E-42 | 2.911336125856E-37 |
| 70 | 8 | Mes | Mesangial cells | combined | EMCN | 51705 | 16041 | 0.85 | 0.52 | 0.09 | 1.7613018306389E-38 | 5.9345303881547E-34 |
| 70 | 8 | Mes | Mesangial cells | combined | LIMA1 | 51474 | 24636 | 0.85 | 0.47 | 0.13 | 1.5839871867719E-21 | 5.3370864271094E-17 |
| 70 | 8 | Mes | Mesangial cells | combined | SERPINH1 | 871 | 1546 | 0.85 | 0.87 | 0.58 | 4.7230543951317E-20 | 1.5913859478957E-15 |
| 70 | 8 | Mes | Mesangial cells | combined | CD248 | 57124 | 18219 | 0.84 | 0.41 | 0.04 | 6.8807172803911E-61 | 2.318388880455E-56 |
| 70 | 8 | Mes | Mesangial cells | combined | TM4SF1 | 4071 | 11853 | 0.84 | 0.39 | 0.04 | 7.6791520711246E-52 | 2.5874134988447E-47 |
| 70 | 8 | Mes | Mesangial cells | combined | LHFPL6 | 10186 | 6586 | 0.83 | 0.46 | 0.07 | 7.4224028667557E-36 | 2.5009044219247E-31 |
| 70 | 8 | Mes | Mesangial cells | combined | IGFBP5 | 3488 | 5474 | 0.83 | 0.5 | 0.14 | 3.4802083102543E-18 | 1.1726213880571E-13 |
| 70 | 8 | Mes | Mesangial cells | combined | TPM1 | 7168 | 12010 | 0.82 | 0.89 | 0.6 | 2.2085914121268E-17 | 7.4416279040199E-13 |
| 70 | 8 | Mes | Mesangial cells | combined | MT2A | 4502 | 7406 | 0.82 | 0.35 | 0.12 | 8.1148716652026E-11 | 2.7342248588734E-6 |
| 70 | 8 | Mes | Mesangial cells | combined | MAP3K20 | 51776 | 17797 | 0.81 | 0.53 | 0.12 | 3.6688187486602E-32 | 1.2361717891736E-27 |
| 70 | 8 | Mes | Mesangial cells | combined | SELENOW | 6415 | 10752 | 0.81 | 0.75 | 0.43 | 2.1452397771084E-16 | 7.2281709049889E-12 |
| 70 | 8 | Mes | Mesangial cells | combined | RGS16 | 6004 | 9997 | 0.8 | 0.19 | 0.04 | 4.8940548222943E-11 | 1.6490028318238E-6 |
| 70 | 8 | Mes | Mesangial cells | combined | TGFB1I1 | 7041 | 11767 | 0.8 | 0.48 | 0.12 | 1.4773396431019E-23 | 4.9777481934674E-19 |
| 70 | 8 | Mes | Mesangial cells | combined | NOTCH3 | 4854 | 7883 | 0.79 | 0.42 | 0.1 | 2.8306258983154E-23 | 9.537510901784E-19 |
| 70 | 8 | Mes | Mesangial cells | combined | OAZ2 | 4947 | 8096 | 0.78 | 0.73 | 0.5 | 1.9848969321459E-10 | 6.6879117231723E-6 |
| 70 | 8 | Mes | Mesangial cells | combined | ATP5F1E | 514 | 838 | 0.78 | 0.93 | 0.8 | 4.7107024171898E-17 | 1.5872240724479E-12 |
| 70 | 8 | Mes | Mesangial cells | combined | SH3BGRL | 6451 | 10823 | 0.77 | 0.79 | 0.49 | 7.9683144031122E-17 | 2.6848438549846E-12 |
| 70 | 8 | Mes | Mesangial cells | combined | PIP4P2 | 55529 | 25452 | 0.76 | 0.43 | 0.09 | 4.528304477324E-26 | 1.5257669105896E-21 |
| 70 | 8 | Mes | Mesangial cells | combined | SPARCL1 | 8404 | 11220 | 0.75 | 0.24 | 0.009 | 1.8359696503075E-92 | 6.1861161397461E-88 |
| 70 | 8 | Mes | Mesangial cells | combined | MEG3 | 55384 | 14575 | 0.74 | 0.6 | 0.2 | 2.718941945404E-19 | 9.1612029908443E-15 |
| 70 | 8 | Mes | Mesangial cells | combined | PPP1R12A | 4659 | 7618 | 0.72 | 0.71 | 0.35 | 1.2867394035054E-15 | 4.3355397461712E-11 |
| 70 | 8 | Mes | Mesangial cells | combined | PLAT | 5327 | 9051 | 0.72 | 0.55 | 0.15 | 4.8514510383111E-23 | 1.6346479128485E-18 |
| 70 | 8 | Mes | Mesangial cells | combined | FN1 | 2335 | 3778 | 0.72 | 0.41 | 0.12 | 4.880572838246E-16 | 1.6444602121186E-11 |
| 70 | 8 | Mes | Mesangial cells | combined | POSTN | 10631 | 16953 | 0.71 | 0.29 | 0.04 | 1.5851887147632E-24 | 5.3411348555231E-20 |
| 70 | 8 | Mes | Mesangial cells | combined | TPM4 | 7171 | 12013 | 0.71 | 0.65 | 0.39 | 7.4748211367831E-11 | 2.5185662338277E-6 |
| 70 | 8 | Mes | Mesangial cells | combined | TMEM47 | 83604 | 18515 | 0.69 | 0.33 | 0.03 | 2.8370980647956E-42 | 9.5593182195222E-38 |
| 70 | 8 | Mes | Mesangial cells | combined | FCGRT | 2217 | 3621 | 0.69 | 0.71 | 0.34 | 1.5983673839581E-16 | 5.3855390635083E-12 |
| 70 | 8 | Mes | Mesangial cells | combined | RHOC | 389 | 669 | 0.68 | 0.65 | 0.35 | 6.4341778636484E-12 | 2.1679318893777E-7 |
| 70 | 8 | Mes | Mesangial cells | combined | USP53 | 54532 | 29255 | 0.68 | 0.33 | 0.07 | 2.7078840335877E-21 | 9.1239444627702E-17 |
| 70 | 8 | Mes | Mesangial cells | combined | CCR10 | 2826 | 4474 | 0.68 | 0.28 | 0.01 | 7.70863185145E-68 | 2.5973464160275E-63 |
| 70 | 8 | Mes | Mesangial cells | combined | HRC | 3270 | 5178 | 0.68 | 0.37 | 0.02 | 3.0071232997369E-69 | 1.0132201246133E-64 |
| 70 | 8 | Mes | Mesangial cells | combined | PTP4A3 | 11156 | 9636 | 0.67 | 0.24 | 0.08 | 2.4995570733107E-7 | 0.0084220076028131 |
| 70 | 8 | Mes | Mesangial cells | combined | C11orf96 | 387763 | 38675 | 0.67 | 0.39 | 0.06 | 2.5492929476311E-33 | 8.5895876577481E-29 |
| 70 | 8 | Mes | Mesangial cells | combined | PELO | 53918 | 8829 | 0.67 | 0.43 | 0.17 | 1.2224369130499E-10 | 4.1188789348304E-6 |
| 70 | 8 | Mes | Mesangial cells | combined | MAGED2 | 10916 | 16353 | 0.67 | 0.97 | 0.8 | 7.1112755052579E-18 | 2.3960731687416E-13 |
| 70 | 8 | Mes | Mesangial cells | combined | LMNA | 4000 | 6636 | 0.67 | 0.66 | 0.45 | 5.1233257078176E-9 | 0.0001726253363992 |
| 70 | 8 | Mes | Mesangial cells | combined | ANXA6 | 309 | 544 | 0.66 | 0.44 | 0.16 | 3.4421585618305E-14 | 1.1598009058232E-9 |
| 70 | 8 | Mes | Mesangial cells | combined | BZW2 | 28969 | 18808 | 0.66 | 0.5 | 0.24 | 1.6428557937496E-9 | 5.53543831146E-5 |
| 70 | 8 | Mes | Mesangial cells | combined | CYP1B1 | 1545 | 2597 | 0.66 | 0.37 | 0.14 | 1.2681035054514E-8 | 0.0004272747951268 |
| 70 | 8 | Mes | Mesangial cells | combined | C12orf57 | 113246 | 29521 | 0.65 | 0.76 | 0.46 | 1.8126354592479E-14 | 6.1074939163899E-10 |
| 70 | 8 | Mes | Mesangial cells | combined | RASL11B | 65997 | 23804 | 0.65 | 0.47 | 0.14 | 1.6533770264318E-16 | 5.5708885528595E-12 |
| 70 | 8 | Mes | Mesangial cells | combined | CYTOR | 112597 | 28717 | 0.65 | 0.28 | 0.02 | 2.953107662046E-40 | 9.9502009564979E-36 |
| 70 | 8 | Mes | Mesangial cells | combined | UACA | 55075 | 15947 | 0.64 | 0.42 | 0.13 | 6.2688415928044E-16 | 2.1122234862795E-11 |
| 70 | 8 | Mes | Mesangial cells | combined | MEIS2 | 4212 | 7001 | 0.63 | 0.71 | 0.33 | 1.9404333499615E-14 | 6.5380961293604E-10 |
| 70 | 8 | Mes | Mesangial cells | combined | COL4A2 | 1284 | 2203 | 0.63 | 0.57 | 0.29 | 1.8207683046804E-10 | 6.1348967257902E-6 |
| 70 | 8 | Mes | Mesangial cells | combined | RRAD | 6236 | 10446 | 0.63 | 0.2 | 0.02 | 2.1997848481768E-20 | 7.411955067447E-16 |
| 70 | 8 | Mes | Mesangial cells | combined | AGTR1 | 185 | 336 | 0.63 | 0.26 | 0.02 | 1.4650116663331E-40 | 4.9362103085429E-36 |
| 70 | 8 | Mes | Mesangial cells | combined | NPY1R | 4886 | 7956 | 0.62 | 0.24 | 0.01 | 3.4361181086612E-84 | 1.1577656355323E-79 |
| 70 | 8 | Mes | Mesangial cells | combined | PPFIBP1 | 8496 | 9249 | 0.62 | 0.39 | 0.13 | 1.3781996139408E-13 | 4.6437057792122E-9 |
| 70 | 8 | Mes | Mesangial cells | combined | COL1A2 | 1278 | 2198 | 0.62 | 0.64 | 0.2 | 3.1213548120276E-20 | 1.0517092903646E-15 |
| 70 | 8 | Mes | Mesangial cells | combined | GJA4 | 2701 | 4278 | 0.62 | 0.21 | 0.003 | 1.4352298934862E-203 | 4.8358636031123E-199 |
| 70 | 8 | Mes | Mesangial cells | combined | CAMK1 | 8536 | 1459 | 0.61 | 0.3 | 0.07 | 5.0819242363554E-17 | 1.7123035521976E-12 |
| 70 | 8 | Mes | Mesangial cells | combined | HCFC1R1 | 54985 | 21198 | 0.61 | 0.44 | 0.23 | 1.7662348670725E-7 | 0.0059511517611142 |
| 70 | 8 | Mes | Mesangial cells | combined | CCN4 | 8840 | 12769 | 0.61 | 0.28 | 0.01 | 1.8904239922391E-67 | 6.3695945994503E-63 |
| 70 | 8 | Mes | Mesangial cells | combined | KCNJ8 | 3764 | 6269 | 0.6 | 0.32 | 0.04 | 1.6760332444422E-29 | 5.6472264138237E-25 |
| 70 | 8 | Mes | Mesangial cells | combined | WFDC1 | 58189 | 15466 | 0.6 | 0.23 | 0.009 | 5.0813314737384E-83 | 1.7121038267614E-78 |
| 70 | 8 | Mes | Mesangial cells | combined | MIR143 | 406935 | 31530 | 0.6 | 0.28 | 0.01 | 1.243147501136E-103 | 4.1886611903276E-99 |
| 70 | 8 | Mes | Mesangial cells | combined | UBA2 | 10054 | 30661 | 0.6 | 0.64 | 0.36 | 5.4934118792647E-11 | 1.8509501985995E-6 |
| 70 | 8 | Mes | Mesangial cells | combined | S100A11 | 6282 | 10488 | 0.6 | 0.64 | 0.43 | 1.3876957270799E-7 | 0.0046757019828229 |
| 70 | 8 | Mes | Mesangial cells | combined | ITGA1 | 3672 | 6134 | 0.59 | 0.3 | 0.06 | 1.1279497107198E-20 | 3.8005137552994E-16 |