Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: combined
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
70 | 8 | Mes | Mesangial cells | combined | REN | 5972 | 9958 | 4.99 | 0.33 | 0.007 | 7.29357134710344e-212 | 2.45749592969303e-207 |
70 | 8 | Mes | Mesangial cells | combined | ACTA2 | 59 | 130 | 2.41 | 0.6 | 0.07 | 2.90517295841203e-79 | 9.7886897660735e-75 |
70 | 8 | Mes | Mesangial cells | combined | GNAS | 2778 | 4392 | 2.35 | 0.93 | 0.67 | 2.33024603312579e-37 | 7.85153098401403e-33 |
70 | 8 | Mes | Mesangial cells | combined | MGP | 4256 | 7060 | 2.19 | 0.66 | 0.02 | 0 | 0 |
70 | 8 | Mes | Mesangial cells | combined | MEF2C | 4208 | 6996 | 1.91 | 0.73 | 0.04 | 7.34313152885058e-181 | 2.47419473733091e-176 |
70 | 8 | Mes | Mesangial cells | combined | A2M | 2 | 7 | 1.76 | 0.61 | 0.03 | 1.21354852079864e-175 | 4.08893038597895e-171 |
70 | 8 | Mes | Mesangial cells | combined | TPM2 | 7169 | 12011 | 1.74 | 0.88 | 0.23 | 6.76544914890518e-60 | 2.27955043623211e-55 |
70 | 8 | Mes | Mesangial cells | combined | TINAGL1 | 64129 | 19168 | 1.55 | 0.6 | 0.05 | 2.41824486770851e-95 | 8.14803425725707e-91 |
70 | 8 | Mes | Mesangial cells | combined | ENG | 2022 | 3349 | 1.55 | 0.57 | 0.04 | 3.0985520953051e-112 | 1.0440261429921e-107 |
70 | 8 | Mes | Mesangial cells | combined | ANGPT2 | 285 | 485 | 1.53 | 0.57 | 0.03 | 4.41953618553903e-156 | 1.48911852235552e-151 |
70 | 8 | Mes | Mesangial cells | combined | GATA3 | 2625 | 4172 | 1.51 | 0.51 | 0.04 | 5.8003384387704e-88 | 1.9543660335593e-83 |
70 | 8 | Mes | Mesangial cells | combined | KCNE4 | 23704 | 6244 | 1.48 | 0.57 | 0.03 | 9.63360920932548e-167 | 3.24594828699013e-162 |
70 | 8 | Mes | Mesangial cells | combined | FRZB | 2487 | 3959 | 1.45 | 0.56 | 0.03 | 3.11849429129476e-161 | 1.05074546650886e-156 |
70 | 8 | Mes | Mesangial cells | combined | CALD1 | 800 | 1441 | 1.4 | 0.97 | 0.54 | 9.08666702997686e-37 | 3.0616615890804e-32 |
70 | 8 | Mes | Mesangial cells | combined | NDUFA4L2 | 56901 | 29836 | 1.33 | 0.47 | 0.008 | 0 | 0 |
70 | 8 | Mes | Mesangial cells | combined | ADIRF | 10974 | 24043 | 1.32 | 0.21 | 0.01 | 3.58808541367191e-55 | 1.20896949928261e-50 |
70 | 8 | Mes | Mesangial cells | combined | SERPINI1 | 5274 | 8943 | 1.31 | 0.42 | 0.03 | 3.15069634722205e-80 | 1.061595627233e-75 |
70 | 8 | Mes | Mesangial cells | combined | ISYNA1 | 51477 | 29821 | 1.29 | 0.71 | 0.28 | 8.29392274106792e-27 | 2.79455432837543e-22 |
70 | 8 | Mes | Mesangial cells | combined | TAGLN | 6876 | 11553 | 1.27 | 0.55 | 0.1 | 2.2186207172506e-36 | 7.47542064470417e-32 |
70 | 8 | Mes | Mesangial cells | combined | HSPB1 | 3315 | 5246 | 1.24 | 0.88 | 0.57 | 1.19192130809382e-24 | 4.0160596554913e-20 |
70 | 8 | Mes | Mesangial cells | combined | PDGFRB | 5159 | 8804 | 1.22 | 0.66 | 0.08 | 1.30751474834807e-76 | 4.40554019308398e-72 |
70 | 8 | Mes | Mesangial cells | combined | BGN | 633 | 1044 | 1.17 | 0.65 | 0.19 | 6.27706288516626e-30 | 2.11499356852792e-25 |
70 | 8 | Mes | Mesangial cells | combined | RERGL | 79785 | 26213 | 1.16 | 0.28 | 0.002 | 0 | 0 |
70 | 8 | Mes | Mesangial cells | combined | LGALS1 | 3956 | 6561 | 1.09 | 0.82 | 0.24 | 5.95333565309447e-33 | 2.00591691495365e-28 |
70 | 8 | Mes | Mesangial cells | combined | CPE | 1363 | 2303 | 1.06 | 0.62 | 0.2 | 3.38801526403907e-26 | 1.14155786306532e-21 |
70 | 8 | Mes | Mesangial cells | combined | ENSG00000267042 | NULL | 1.04 | 0.47 | 0.02 | 7.69892239797996e-142 | 2.59407491277537e-137 | |
70 | 8 | Mes | Mesangial cells | combined | MCAM | 4162 | 6934 | 1.02 | 0.44 | 0.04 | 8.14887089940087e-62 | 2.74568056084413e-57 |
70 | 8 | Mes | Mesangial cells | combined | FHL2 | 2274 | 3703 | 0.99 | 0.47 | 0.09 | 4.53339070518265e-31 | 1.52748066420424e-26 |
70 | 8 | Mes | Mesangial cells | combined | IGFBP7 | 3490 | 5476 | 0.98 | 0.91 | 0.56 | 5.15377122348199e-23 | 1.73651167604002e-18 |
70 | 8 | Mes | Mesangial cells | combined | HOPX | 84525 | 24961 | 0.98 | 0.38 | 0.04 | 4.56461138174961e-51 | 1.53800015896671e-46 |
70 | 8 | Mes | Mesangial cells | combined | PDLIM1 | 9124 | 2067 | 0.95 | 0.61 | 0.25 | 1.41206190155587e-19 | 4.75780137110234e-15 |
70 | 8 | Mes | Mesangial cells | combined | ELN | 2006 | 3327 | 0.95 | 0.16 | 0.02 | 1.94554296173475e-13 | 6.55531245526907e-09 |
70 | 8 | Mes | Mesangial cells | combined | EBF1 | 1879 | 3126 | 0.93 | 0.44 | 0.03 | 6.27539681498741e-81 | 2.11443220284186e-76 |
70 | 8 | Mes | Mesangial cells | combined | SOD3 | 6649 | 11181 | 0.92 | 0.29 | 0.01 | 1.47272810568826e-73 | 4.96221007930602e-69 |
70 | 8 | Mes | Mesangial cells | combined | CD55 | 1604 | 2665 | 0.91 | 0.48 | 0.13 | 3.57954750791753e-22 | 1.20609273731773e-17 |
70 | 8 | Mes | Mesangial cells | combined | THY1 | 7070 | 11801 | 0.9 | 0.47 | 0.1 | 1.48634404990232e-28 | 5.00808764174088e-24 |
70 | 8 | Mes | Mesangial cells | combined | IGF2 | 3481 | 5466 | 0.9 | 0.84 | 0.51 | 4.1031633592717e-17 | 1.38251986227301e-12 |
70 | 8 | Mes | Mesangial cells | combined | F2R | 2149 | 3537 | 0.88 | 0.42 | 0.14 | 6.15444896655827e-15 | 2.07368003479214e-10 |
70 | 8 | Mes | Mesangial cells | combined | GJA5 | 2702 | 4279 | 0.87 | 0.32 | 0.006 | 5.83633153003006e-230 | 1.96649354572833e-225 |
70 | 8 | Mes | Mesangial cells | combined | MECOM | 2122 | 3498 | 0.86 | 0.47 | 0.07 | 8.64051797309914e-42 | 2.91133612585602e-37 |
70 | 8 | Mes | Mesangial cells | combined | EMCN | 51705 | 16041 | 0.85 | 0.52 | 0.09 | 1.76130183063889e-38 | 5.93453038815469e-34 |
70 | 8 | Mes | Mesangial cells | combined | LIMA1 | 51474 | 24636 | 0.85 | 0.47 | 0.13 | 1.58398718677194e-21 | 5.33708642710936e-17 |
70 | 8 | Mes | Mesangial cells | combined | SERPINH1 | 871 | 1546 | 0.85 | 0.87 | 0.58 | 4.72305439513172e-20 | 1.59138594789568e-15 |
70 | 8 | Mes | Mesangial cells | combined | CD248 | 57124 | 18219 | 0.84 | 0.41 | 0.04 | 6.88071728039113e-61 | 2.31838888045499e-56 |
70 | 8 | Mes | Mesangial cells | combined | TM4SF1 | 4071 | 11853 | 0.84 | 0.39 | 0.04 | 7.67915207112458e-52 | 2.58741349884471e-47 |
70 | 8 | Mes | Mesangial cells | combined | LHFPL6 | 10186 | 6586 | 0.83 | 0.46 | 0.07 | 7.42240286675568e-36 | 2.50090442192466e-31 |
70 | 8 | Mes | Mesangial cells | combined | IGFBP5 | 3488 | 5474 | 0.83 | 0.5 | 0.14 | 3.48020831025427e-18 | 1.17262138805707e-13 |
70 | 8 | Mes | Mesangial cells | combined | TPM1 | 7168 | 12010 | 0.82 | 0.89 | 0.6 | 2.20859141212677e-17 | 7.44162790401995e-13 |
70 | 8 | Mes | Mesangial cells | combined | MT2A | 4502 | 7406 | 0.82 | 0.35 | 0.12 | 8.11487166520258e-11 | 2.73422485887336e-06 |
70 | 8 | Mes | Mesangial cells | combined | MAP3K20 | 51776 | 17797 | 0.81 | 0.53 | 0.12 | 3.66881874866022e-32 | 1.23617178917357e-27 |
70 | 8 | Mes | Mesangial cells | combined | SELENOW | 6415 | 10752 | 0.81 | 0.75 | 0.43 | 2.14523977710837e-16 | 7.22817090498893e-12 |
70 | 8 | Mes | Mesangial cells | combined | RGS16 | 6004 | 9997 | 0.8 | 0.19 | 0.04 | 4.89405482229428e-11 | 1.64900283182383e-06 |
70 | 8 | Mes | Mesangial cells | combined | TGFB1I1 | 7041 | 11767 | 0.8 | 0.48 | 0.12 | 1.47733964310187e-23 | 4.97774819346744e-19 |
70 | 8 | Mes | Mesangial cells | combined | NOTCH3 | 4854 | 7883 | 0.79 | 0.42 | 0.1 | 2.83062589831542e-23 | 9.53751090178399e-19 |
70 | 8 | Mes | Mesangial cells | combined | OAZ2 | 4947 | 8096 | 0.78 | 0.73 | 0.5 | 1.98489693214588e-10 | 6.68791172317232e-06 |
70 | 8 | Mes | Mesangial cells | combined | ATP5F1E | 514 | 838 | 0.78 | 0.93 | 0.8 | 4.7107024171898e-17 | 1.58722407244793e-12 |
70 | 8 | Mes | Mesangial cells | combined | SH3BGRL | 6451 | 10823 | 0.77 | 0.79 | 0.49 | 7.96831440311216e-17 | 2.68484385498461e-12 |
70 | 8 | Mes | Mesangial cells | combined | PIP4P2 | 55529 | 25452 | 0.76 | 0.43 | 0.09 | 4.52830447732401e-26 | 1.52576691058955e-21 |
70 | 8 | Mes | Mesangial cells | combined | SPARCL1 | 8404 | 11220 | 0.75 | 0.24 | 0.009 | 1.8359696503075e-92 | 6.18611613974608e-88 |
70 | 8 | Mes | Mesangial cells | combined | MEG3 | 55384 | 14575 | 0.74 | 0.6 | 0.2 | 2.71894194540402e-19 | 9.16120299084431e-15 |
70 | 8 | Mes | Mesangial cells | combined | PPP1R12A | 4659 | 7618 | 0.72 | 0.71 | 0.35 | 1.28673940350543e-15 | 4.3355397461712e-11 |
70 | 8 | Mes | Mesangial cells | combined | PLAT | 5327 | 9051 | 0.72 | 0.55 | 0.15 | 4.85145103831106e-23 | 1.63464791284853e-18 |
70 | 8 | Mes | Mesangial cells | combined | FN1 | 2335 | 3778 | 0.72 | 0.41 | 0.12 | 4.88057283824602e-16 | 1.64446021211861e-11 |
70 | 8 | Mes | Mesangial cells | combined | POSTN | 10631 | 16953 | 0.71 | 0.29 | 0.04 | 1.58518871476318e-24 | 5.34113485552305e-20 |
70 | 8 | Mes | Mesangial cells | combined | TPM4 | 7171 | 12013 | 0.71 | 0.65 | 0.39 | 7.47482113678307e-11 | 2.51856623382769e-06 |
70 | 8 | Mes | Mesangial cells | combined | TMEM47 | 83604 | 18515 | 0.69 | 0.33 | 0.03 | 2.83709806479558e-42 | 9.55931821952222e-38 |
70 | 8 | Mes | Mesangial cells | combined | FCGRT | 2217 | 3621 | 0.69 | 0.71 | 0.34 | 1.59836738395806e-16 | 5.38553906350828e-12 |
70 | 8 | Mes | Mesangial cells | combined | RHOC | 389 | 669 | 0.68 | 0.65 | 0.35 | 6.43417786364842e-12 | 2.1679318893777e-07 |
70 | 8 | Mes | Mesangial cells | combined | USP53 | 54532 | 29255 | 0.68 | 0.33 | 0.07 | 2.70788403358765e-21 | 9.12394446277022e-17 |
70 | 8 | Mes | Mesangial cells | combined | CCR10 | 2826 | 4474 | 0.68 | 0.28 | 0.01 | 7.70863185144996e-68 | 2.59734641602755e-63 |
70 | 8 | Mes | Mesangial cells | combined | HRC | 3270 | 5178 | 0.68 | 0.37 | 0.02 | 3.00712329973688e-69 | 1.01322012461335e-64 |
70 | 8 | Mes | Mesangial cells | combined | PTP4A3 | 11156 | 9636 | 0.67 | 0.24 | 0.08 | 2.49955707331072e-07 | 0.00842200760281314 |
70 | 8 | Mes | Mesangial cells | combined | C11orf96 | 387763 | 38675 | 0.67 | 0.39 | 0.06 | 2.54929294763106e-33 | 8.58958765774809e-29 |
70 | 8 | Mes | Mesangial cells | combined | PELO | 53918 | 8829 | 0.67 | 0.43 | 0.17 | 1.22243691304991e-10 | 4.11887893483035e-06 |
70 | 8 | Mes | Mesangial cells | combined | MAGED2 | 10916 | 16353 | 0.67 | 0.97 | 0.8 | 7.1112755052579e-18 | 2.3960731687416e-13 |
70 | 8 | Mes | Mesangial cells | combined | LMNA | 4000 | 6636 | 0.67 | 0.66 | 0.45 | 5.12332570781755e-09 | 0.000172625336399205 |
70 | 8 | Mes | Mesangial cells | combined | ANXA6 | 309 | 544 | 0.66 | 0.44 | 0.16 | 3.44215856183053e-14 | 1.15980090582318e-09 |
70 | 8 | Mes | Mesangial cells | combined | BZW2 | 28969 | 18808 | 0.66 | 0.5 | 0.24 | 1.64285579374963e-09 | 5.53543831146001e-05 |
70 | 8 | Mes | Mesangial cells | combined | CYP1B1 | 1545 | 2597 | 0.66 | 0.37 | 0.14 | 1.26810350545143e-08 | 0.000427274795126804 |
70 | 8 | Mes | Mesangial cells | combined | C12orf57 | 113246 | 29521 | 0.65 | 0.76 | 0.46 | 1.81263545924789e-14 | 6.10749391638985e-10 |
70 | 8 | Mes | Mesangial cells | combined | RASL11B | 65997 | 23804 | 0.65 | 0.47 | 0.14 | 1.65337702643185e-16 | 5.57088855285948e-12 |
70 | 8 | Mes | Mesangial cells | combined | CYTOR | 112597 | 28717 | 0.65 | 0.28 | 0.02 | 2.95310766204603e-40 | 9.95020095649789e-36 |
70 | 8 | Mes | Mesangial cells | combined | UACA | 55075 | 15947 | 0.64 | 0.42 | 0.13 | 6.26884159280442e-16 | 2.11222348627952e-11 |
70 | 8 | Mes | Mesangial cells | combined | MEIS2 | 4212 | 7001 | 0.63 | 0.71 | 0.33 | 1.94043334996152e-14 | 6.53809612936035e-10 |
70 | 8 | Mes | Mesangial cells | combined | COL4A2 | 1284 | 2203 | 0.63 | 0.57 | 0.29 | 1.82076830468043e-10 | 6.13489672579023e-06 |
70 | 8 | Mes | Mesangial cells | combined | RRAD | 6236 | 10446 | 0.63 | 0.2 | 0.02 | 2.19978484817682e-20 | 7.41195506744699e-16 |
70 | 8 | Mes | Mesangial cells | combined | AGTR1 | 185 | 336 | 0.63 | 0.26 | 0.02 | 1.46501166633313e-40 | 4.93621030854286e-36 |
70 | 8 | Mes | Mesangial cells | combined | NPY1R | 4886 | 7956 | 0.62 | 0.24 | 0.01 | 3.43611810866116e-84 | 1.15776563553229e-79 |
70 | 8 | Mes | Mesangial cells | combined | PPFIBP1 | 8496 | 9249 | 0.62 | 0.39 | 0.13 | 1.37819961394082e-13 | 4.64370577921218e-09 |
70 | 8 | Mes | Mesangial cells | combined | COL1A2 | 1278 | 2198 | 0.62 | 0.64 | 0.2 | 3.1213548120276e-20 | 1.05170929036458e-15 |
70 | 8 | Mes | Mesangial cells | combined | GJA4 | 2701 | 4278 | 0.62 | 0.21 | 0.003 | 1.43522989348618e-203 | 4.83586360311232e-199 |
70 | 8 | Mes | Mesangial cells | combined | CAMK1 | 8536 | 1459 | 0.61 | 0.3 | 0.07 | 5.08192423635542e-17 | 1.71230355219759e-12 |
70 | 8 | Mes | Mesangial cells | combined | HCFC1R1 | 54985 | 21198 | 0.61 | 0.44 | 0.23 | 1.76623486707253e-07 | 0.00595115176111418 |
70 | 8 | Mes | Mesangial cells | combined | CCN4 | 8840 | 12769 | 0.61 | 0.28 | 0.01 | 1.89042399223906e-67 | 6.36959459945029e-63 |
70 | 8 | Mes | Mesangial cells | combined | KCNJ8 | 3764 | 6269 | 0.6 | 0.32 | 0.04 | 1.67603324444223e-29 | 5.64722641382366e-25 |
70 | 8 | Mes | Mesangial cells | combined | WFDC1 | 58189 | 15466 | 0.6 | 0.23 | 0.009 | 5.08133147373841e-83 | 1.71210382676142e-78 |
70 | 8 | Mes | Mesangial cells | combined | MIR143 | 406935 | 31530 | 0.6 | 0.28 | 0.01 | 1.24314750113599e-103 | 4.18866119032761e-99 |
70 | 8 | Mes | Mesangial cells | combined | UBA2 | 10054 | 30661 | 0.6 | 0.64 | 0.36 | 5.49341187926475e-11 | 1.85095019859947e-06 |
70 | 8 | Mes | Mesangial cells | combined | S100A11 | 6282 | 10488 | 0.6 | 0.64 | 0.43 | 1.38769572707988e-07 | 0.00467570198282293 |
70 | 8 | Mes | Mesangial cells | combined | ITGA1 | 3672 | 6134 | 0.59 | 0.3 | 0.06 | 1.12794971071982e-20 | 3.80051375529938e-16 |