Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: combined
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
70 | 7 | Leu | Leukocyte | combined | HLA-DRA | 3122 | 4947 | 3.68 | 0.83 | 0.02 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CD74 | 972 | 1697 | 3.51 | 0.93 | 0.17 | 1.07573946446509e-129 | 3.62459655156867e-125 |
70 | 7 | Leu | Leukocyte | combined | HLA-DPA1 | 3113 | 4938 | 3.13 | 0.78 | 0.01 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | HLA-DPB1 | 3115 | 4940 | 3.11 | 0.81 | 0.04 | 6.54979008393251e-298 | 2.20688627088022e-293 |
70 | 7 | Leu | Leukocyte | combined | SRGN | 5552 | 9361 | 3.02 | 0.91 | 0.004 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CCL3 | 6348 | 10627 | 2.73 | 0.52 | 0.002 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CXCL8 | 3576 | 6025 | 2.71 | 0.57 | 0.006 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CCL4 | 6351 | 10630 | 2.64 | 0.41 | 0.002 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CST3 | 1471 | 2475 | 2.54 | 0.8 | 0.66 | 9.75739524811944e-31 | 3.28765675490136e-26 |
70 | 7 | Leu | Leukocyte | combined | TYROBP | 7305 | 12449 | 2.46 | 0.76 | 0.002 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | HLA-DRB1 | 3123 | 4948 | 2.38 | 0.77 | 0.04 | 2.54305308776823e-282 | 8.56856307392627e-278 |
70 | 7 | Leu | Leukocyte | combined | CORO1A | 11151 | 2252 | 2.2 | 0.89 | 0.02 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | LST1 | 7940 | 14189 | 2.16 | 0.82 | 0.005 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | SAT1 | 6303 | 10540 | 2.13 | 0.85 | 0.45 | 6.63663681599284e-41 | 2.23614840878063e-36 |
70 | 7 | Leu | Leukocyte | combined | S100A4 | 6275 | 10494 | 2.13 | 0.72 | 0.1 | 3.00421669449723e-107 | 1.0122407730439e-102 |
70 | 7 | Leu | Leukocyte | combined | LYZ | 4069 | 6740 | 2.13 | 0.46 | 0.002 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | HLA-B | 3106 | 4932 | 2.09 | 0.88 | 0.12 | 1.89055603535005e-137 | 6.37003950550845e-133 |
70 | 7 | Leu | Leukocyte | combined | ARHGDIB | 397 | 679 | 2.06 | 0.88 | 0.04 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | LTB | 4050 | 6711 | 2.03 | 0.22 | 0.005 | 1.14361580454148e-170 | 3.85329909182206e-166 |
70 | 7 | Leu | Leukocyte | combined | B2M | 567 | 914 | 1.97 | 1 | 0.71 | 2.95341132886041e-66 | 9.95122413146225e-62 |
70 | 7 | Leu | Leukocyte | combined | FCER1G | 2207 | 3611 | 1.9 | 0.78 | 0.005 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | SOD2 | 6648 | 11180 | 1.88 | 0.83 | 0.18 | 5.87363909236671e-88 | 1.97906395578204e-83 |
70 | 7 | Leu | Leukocyte | combined | FTL | 2512 | 3999 | 1.83 | 1 | 0.97 | 9.32004402301822e-36 | 3.14029563311576e-31 |
70 | 7 | Leu | Leukocyte | combined | HLA-DRB5 | 3127 | 4953 | 1.78 | 0.59 | 0.02 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CCL3L3 | 414062 | 30554 | 1.76 | 0.24 | 0.002 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | C15orf48 | 84419 | 29898 | 1.75 | 0.41 | 0.005 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CD83 | 9308 | 1703 | 1.75 | 0.76 | 0.07 | 3.61684917639619e-178 | 1.21866116149493e-173 |
70 | 7 | Leu | Leukocyte | combined | CCL4L2 | 9560 | 24066 | 1.74 | 0.27 | 0.002 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | LAPTM5 | 7805 | 29612 | 1.73 | 0.74 | 0.005 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | GPR183 | 1880 | 3128 | 1.71 | 0.64 | 0.003 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | S100A9 | 6280 | 10499 | 1.64 | 0.19 | 0.003 | 5.2234914993557e-212 | 1.76000322579291e-207 |
70 | 7 | Leu | Leukocyte | combined | ARPC1B | 10095 | 704 | 1.63 | 0.89 | 0.17 | 7.98948287303068e-109 | 2.69197635923896e-104 |
70 | 7 | Leu | Leukocyte | combined | IL1B | 3553 | 5992 | 1.58 | 0.42 | 0.002 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CD44 | 960 | 1681 | 1.57 | 0.7 | 0.01 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | HLA-DQA1 | 3117 | 4942 | 1.51 | 0.5 | 0.002 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | HLA-DQB1 | 3119 | 4944 | 1.51 | 0.65 | 0.13 | 4.68094165550272e-62 | 1.57719648140509e-57 |
70 | 7 | Leu | Leukocyte | combined | FTH1 | 2495 | 3976 | 1.49 | 1 | 0.99 | 3.8667894130958e-41 | 1.3028760248485e-36 |
70 | 7 | Leu | Leukocyte | combined | C1QA | 712 | 1241 | 1.48 | 0.21 | 0.001 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | GPX1 | 2876 | 4553 | 1.47 | 0.88 | 0.52 | 8.94985945880361e-44 | 3.01556564604929e-39 |
70 | 7 | Leu | Leukocyte | combined | ANXA1 | 301 | 533 | 1.45 | 0.69 | 0.08 | 5.7011034626968e-107 | 1.92092980072106e-102 |
70 | 7 | Leu | Leukocyte | combined | TYMP | 1890 | 3148 | 1.45 | 0.62 | 0.02 | 6.31837808038137e-279 | 2.1289143104037e-274 |
70 | 7 | Leu | Leukocyte | combined | LSP1 | 4046 | 6707 | 1.45 | 0.65 | 0.008 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | NEAT1 | 283131 | 30815 | 1.44 | 0.91 | 0.48 | 3.06254685109743e-43 | 1.03189453600877e-38 |
70 | 7 | Leu | Leukocyte | combined | COTL1 | 23406 | 18304 | 1.44 | 0.85 | 0.39 | 3.0427243544326e-48 | 1.02521554398252e-43 |
70 | 7 | Leu | Leukocyte | combined | HLA-DMA | 3108 | 4934 | 1.44 | 0.61 | 0.02 | 9.75452201012467e-307 | 3.28668864609141e-302 |
70 | 7 | Leu | Leukocyte | combined | PLAUR | 5329 | 9053 | 1.43 | 0.52 | 0.02 | 5.68696047518767e-218 | 1.91616446250973e-213 |
70 | 7 | Leu | Leukocyte | combined | RILPL2 | 196383 | 28787 | 1.42 | 0.68 | 0.1 | 3.14701234294812e-98 | 1.06035433883294e-93 |
70 | 7 | Leu | Leukocyte | combined | SH3BGRL3 | 83442 | 15568 | 1.41 | 0.94 | 0.52 | 1.68257404375916e-44 | 5.6692649830421e-40 |
70 | 7 | Leu | Leukocyte | combined | CYBA | 1535 | 2577 | 1.4 | 0.98 | 0.47 | 1.30203527792048e-55 | 4.38707766542527e-51 |
70 | 7 | Leu | Leukocyte | combined | CREM | 1390 | 2352 | 1.39 | 0.63 | 0.24 | 3.73210948491887e-31 | 1.25749696984857e-26 |
70 | 7 | Leu | Leukocyte | combined | ALOX5AP | 241 | 436 | 1.38 | 0.61 | 0.004 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | ITGB2 | 3689 | 6155 | 1.36 | 0.62 | 0.007 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | HLA-C | 3107 | 4933 | 1.34 | 0.82 | 0.18 | 5.57704608415009e-76 | 1.87912990759353e-71 |
70 | 7 | Leu | Leukocyte | combined | CD52 | 1043 | 1804 | 1.34 | 0.41 | 0.005 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CD37 | 951 | 1666 | 1.34 | 0.64 | 0.005 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | DUSP2 | 1844 | 3068 | 1.33 | 0.49 | 0.03 | 2.40866533751347e-160 | 8.1157569882179e-156 |
70 | 7 | Leu | Leukocyte | combined | AIF1 | 199 | 352 | 1.32 | 0.87 | 0.24 | 5.78864120526933e-59 | 1.95042476770345e-54 |
70 | 7 | Leu | Leukocyte | combined | NR4A2 | 4929 | 7981 | 1.31 | 0.48 | 0.02 | 7.8244299590857e-230 | 2.63636343041434e-225 |
70 | 7 | Leu | Leukocyte | combined | CLEC10A | 10462 | 16916 | 1.29 | 0.41 | 0 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | PLAC8 | 51316 | 19254 | 1.29 | 0.52 | 0.004 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | RGCC | 28984 | 20369 | 1.28 | 0.49 | 0.04 | 1.05836652399948e-103 | 3.56606016596384e-99 |
70 | 7 | Leu | Leukocyte | combined | REL | 5966 | 9954 | 1.25 | 0.78 | 0.19 | 4.41466110835117e-65 | 1.48747591384784e-60 |
70 | 7 | Leu | Leukocyte | combined | RNASE6 | 6039 | 10048 | 1.25 | 0.56 | 0.002 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CD48 | 962 | 1683 | 1.24 | 0.62 | 0.001 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CTSS | 1520 | 2545 | 1.23 | 0.6 | 0.003 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | PLEK | 5341 | 9070 | 1.21 | 0.55 | 0.002 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | LIMD2 | 80774 | 28142 | 1.21 | 0.74 | 0.18 | 2.26498378307142e-62 | 7.63163635868085e-58 |
70 | 7 | Leu | Leukocyte | combined | CXCL2 | 2920 | 4603 | 1.2 | 0.28 | 0.02 | 4.50276102360291e-69 | 1.51716029929276e-64 |
70 | 7 | Leu | Leukocyte | combined | BID | 637 | 1050 | 1.19 | 0.61 | 0.1 | 2.19307240806506e-69 | 7.38933817173441e-65 |
70 | 7 | Leu | Leukocyte | combined | HCST | 10870 | 16977 | 1.17 | 0.57 | 0.003 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | LCP1 | 3936 | 6528 | 1.15 | 0.6 | 0.004 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | PYCARD | 29108 | 16608 | 1.14 | 0.61 | 0.05 | 6.72986040418547e-133 | 2.26755916458625e-128 |
70 | 7 | Leu | Leukocyte | combined | CCR7 | 1236 | 1608 | 1.14 | 0.32 | 0.001 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | TSPO | 706 | 1158 | 1.13 | 0.55 | 0.16 | 5.38677163838128e-33 | 1.81501883583619e-28 |
70 | 7 | Leu | Leukocyte | combined | GMFG | 9535 | 4374 | 1.13 | 0.66 | 0.01 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | RGS1 | 5996 | 9991 | 1.12 | 0.45 | 0.001 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | FXYD5 | 53827 | 4029 | 1.12 | 0.66 | 0.04 | 8.50450204508203e-207 | 2.86550691906994e-202 |
70 | 7 | Leu | Leukocyte | combined | S100A8 | 6279 | 10498 | 1.12 | 0.1 | 0 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CD53 | 963 | 1686 | 1.11 | 0.61 | 0.001 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | PTPRE | 5791 | 9669 | 1.11 | 0.61 | 0.01 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | NFKBIA | 4792 | 7797 | 1.1 | 0.84 | 0.48 | 6.3706516370668e-22 | 2.14652736259329e-17 |
70 | 7 | Leu | Leukocyte | combined | EMP3 | 2014 | 3335 | 1.09 | 0.76 | 0.22 | 1.14049125698626e-44 | 3.84277124128951e-40 |
70 | 7 | Leu | Leukocyte | combined | SPI1 | 6688 | 11241 | 1.09 | 0.49 | 0.008 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | TNFAIP3 | 7128 | 11896 | 1.09 | 0.43 | 0.03 | 2.12783276785617e-123 | 7.16951972801458e-119 |
70 | 7 | Leu | Leukocyte | combined | RNASET2 | 8635 | 21686 | 1.08 | 0.65 | 0.17 | 2.05701341119439e-48 | 6.93090098767839e-44 |
70 | 7 | Leu | Leukocyte | combined | C1orf162 | 128346 | 28344 | 1.05 | 0.48 | 0.004 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | MS4A6A | 64231 | 13375 | 1.05 | 0.34 | 0.001 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | C1QC | 714 | 1245 | 1.04 | 0.17 | 0 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | RETN | 56729 | 20389 | 1.03 | 0.38 | 0 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | NAMPT | 10135 | 30092 | 1.01 | 0.63 | 0.16 | 1.09319316330691e-46 | 3.68340504444631e-42 |
70 | 7 | Leu | Leukocyte | combined | RPL28 | 6158 | 10330 | 1 | 1 | 0.92 | 2.5819805825575e-45 | 8.69972537486924e-41 |
70 | 7 | Leu | Leukocyte | combined | FCN1 | 2219 | 3623 | 0.99 | 0.24 | 0.001 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | GPSM3 | 63940 | 13945 | 0.98 | 0.58 | 0.03 | 1.36990902837243e-217 | 4.61577148019806e-213 |
70 | 7 | Leu | Leukocyte | combined | PFN1 | 5216 | 8881 | 0.97 | 0.98 | 0.81 | 2.08555655054548e-35 | 7.02707424140794e-31 |
70 | 7 | Leu | Leukocyte | combined | STX11 | 8676 | 11429 | 0.97 | 0.47 | 0.005 | 0 | 0 |
70 | 7 | Leu | Leukocyte | combined | CXCR4 | 7852 | 2561 | 0.96 | 0.56 | 0.14 | 3.08548481428045e-35 | 1.03962325332365e-30 |
70 | 7 | Leu | Leukocyte | combined | HLA-E | 3133 | 4962 | 0.96 | 0.7 | 0.18 | 1.36248902260648e-47 | 4.59077051277026e-43 |
70 | 7 | Leu | Leukocyte | combined | RAC2 | 5880 | 9802 | 0.96 | 0.41 | 0.01 | 1.22295125978802e-304 | 4.12061197472975e-300 |
70 | 7 | Leu | Leukocyte | combined | CD68 | 968 | 1693 | 0.96 | 0.41 | 0.01 | 2.66567491005725e-253 | 8.98172504194689e-249 |
70 | 7 | Leu | Leukocyte | combined | RGS2 | 5997 | 9998 | 0.95 | 0.5 | 0.25 | 9.89716534896507e-11 | 3.33475089268029e-06 |