Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: combined
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
70 | 5 | ICb | Interstitial cells b | combined | SULT1E1 | 6783 | 11377 | 2.89 | 0.95 | 0.11 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | COL1A1 | 1277 | 2197 | 2.23 | 0.97 | 0.18 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | CLDN11 | 5010 | 8514 | 2.22 | 0.76 | 0.07 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | CTSC | 1075 | 2528 | 2.1 | 0.91 | 0.22 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | COL1A2 | 1278 | 2198 | 1.98 | 0.92 | 0.15 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | PRSS23 | 11098 | 14370 | 1.85 | 0.79 | 0.11 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | MFAP4 | 4239 | 7035 | 1.85 | 0.85 | 0.11 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | LGALS1 | 3956 | 6561 | 1.81 | 0.97 | 0.19 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | COL3A1 | 1281 | 2201 | 1.78 | 0.96 | 0.3 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | MOXD1 | 26002 | 21063 | 1.75 | 0.78 | 0.07 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | IGFBP5 | 3488 | 5474 | 1.68 | 0.76 | 0.1 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | DCN | 1634 | 2705 | 1.67 | 0.75 | 0.11 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | OLFML3 | 56944 | 24956 | 1.65 | 0.79 | 0.07 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | PCOLCE | 5118 | 8738 | 1.64 | 0.81 | 0.09 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | SFRP1 | 6422 | 10776 | 1.61 | 0.52 | 0.11 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | TGFBI | 7045 | 11771 | 1.6 | 0.7 | 0.05 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | TNC | 3371 | 5318 | 1.58 | 0.69 | 0.05 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | ALX1 | 8092 | 1494 | 1.56 | 0.62 | 0.03 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | CPE | 1363 | 2303 | 1.53 | 0.72 | 0.16 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | MEG3 | 55384 | 14575 | 1.48 | 0.78 | 0.16 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | PTN | 5764 | 9630 | 1.46 | 0.81 | 0.32 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | PDGFRA | 5156 | 8803 | 1.45 | 0.62 | 0.04 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | COL6A3 | 1293 | 2213 | 1.43 | 0.71 | 0.09 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | AKAP12 | 9590 | 370 | 1.42 | 0.88 | 0.37 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | GUCY1A1 | 2982 | 4685 | 1.41 | 0.63 | 0.07 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | MMP2 | 4313 | 7166 | 1.33 | 0.64 | 0.07 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | PLK2 | 10769 | 19699 | 1.3 | 0.65 | 0.26 | 1.26006632475013e-283 | 4.24566747461308e-279 |
70 | 5 | ICb | Interstitial cells b | combined | ZEB2 | 9839 | 14881 | 1.29 | 0.69 | 0.16 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | NTM | 50863 | 17941 | 1.28 | 0.55 | 0.06 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | OGN | 4969 | 8126 | 1.28 | 0.45 | 0.02 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | FBLN5 | 10516 | 3602 | 1.27 | 0.55 | 0.05 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | PLAC9 | 219348 | 19255 | 1.27 | 0.55 | 0.04 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | ATP2B1 | 490 | 814 | 1.26 | 0.81 | 0.47 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | SYT1 | 6857 | 11509 | 1.24 | 0.61 | 0.12 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | CALD1 | 800 | 1441 | 1.21 | 0.88 | 0.52 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | AGTR2 | 186 | 338 | 1.2 | 0.45 | 0.03 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | COL21A1 | 81578 | 17025 | 1.2 | 0.5 | 0.04 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | PCDH18 | 54510 | 14268 | 1.19 | 0.55 | 0.08 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | PLAT | 5327 | 9051 | 1.18 | 0.59 | 0.12 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | CHODL | 140578 | 17807 | 1.17 | 0.34 | 0.02 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | EMILIN1 | 11117 | 19880 | 1.16 | 0.59 | 0.11 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | FLRT2 | 23768 | 3761 | 1.14 | 0.54 | 0.08 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | CYP1B1 | 1545 | 2597 | 1.13 | 0.52 | 0.11 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | LRRC17 | 10234 | 16895 | 1.12 | 0.49 | 0.05 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | COL5A2 | 1290 | 2210 | 1.11 | 0.51 | 0.07 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | TMX4 | 56255 | 25237 | 1.09 | 0.41 | 0.24 | 8.90555528772313e-76 | 3.00063779864543e-71 |
70 | 5 | ICb | Interstitial cells b | combined | APCDD1 | 147495 | 15718 | 1.05 | 0.32 | 0.02 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | MYLK | 4638 | 7590 | 1.05 | 0.55 | 0.13 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | COL6A2 | 1292 | 2212 | 1.04 | 0.56 | 0.11 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | TPM2 | 7169 | 12011 | 1.03 | 0.67 | 0.21 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | MARCKS | 4082 | 6759 | 1.03 | 0.94 | 0.63 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | MDFI | 4188 | 6967 | 1.02 | 0.49 | 0.08 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | EMCN | 51705 | 16041 | 1 | 0.47 | 0.06 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | TAGLN | 6876 | 11553 | 0.99 | 0.41 | 0.09 | 5.68853896487365e-268 | 1.91669631882453e-263 |
70 | 5 | ICb | Interstitial cells b | combined | FN1 | 2335 | 3778 | 0.99 | 0.48 | 0.09 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | ITM2A | 9452 | 6173 | 0.99 | 0.35 | 0.06 | 2.6123792522963e-282 | 8.80215065268716e-278 |
70 | 5 | ICb | Interstitial cells b | combined | LUM | 4060 | 6724 | 0.97 | 0.2 | 0.01 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | C7 | 730 | 1346 | 0.97 | 0.32 | 0.02 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | CLMP | 79827 | 24039 | 0.96 | 0.42 | 0.05 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | GRID2 | 2895 | 4576 | 0.95 | 0.32 | 0.02 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | CDH11 | 1009 | 1750 | 0.94 | 0.54 | 0.16 | 7.91329150604829e-277 | 2.66630444004791e-272 |
70 | 5 | ICb | Interstitial cells b | combined | SERPINH1 | 871 | 1546 | 0.92 | 0.85 | 0.56 | 1.85848920968471e-260 | 6.26199354311167e-256 |
70 | 5 | ICb | Interstitial cells b | combined | B2M | 567 | 914 | 0.92 | 0.98 | 0.69 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | GPC3 | 2719 | 4451 | 0.92 | 0.98 | 0.76 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | SNAI2 | 6591 | 11094 | 0.91 | 0.45 | 0.1 | 9.78785281947346e-293 | 3.29791912899339e-288 |
70 | 5 | ICb | Interstitial cells b | combined | EDNRB | 1910 | 3180 | 0.91 | 0.35 | 0.03 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | TSHZ2 | 128553 | 13010 | 0.91 | 0.46 | 0.14 | 1.39559992107769e-213 | 4.70233437407916e-209 |
70 | 5 | ICb | Interstitial cells b | combined | LDB2 | 9079 | 6533 | 0.9 | 0.39 | 0.06 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | LMO4 | 8543 | 6644 | 0.89 | 0.58 | 0.34 | 1.00368174116601e-131 | 3.38180525868475e-127 |
70 | 5 | ICb | Interstitial cells b | combined | SERPINE2 | 5270 | 8951 | 0.89 | 0.49 | 0.2 | 2.70433866732788e-170 | 9.11199870569457e-166 |
70 | 5 | ICb | Interstitial cells b | combined | COL4A1 | 1282 | 2202 | 0.88 | 0.56 | 0.25 | 5.01153908565368e-184 | 1.68858797952015e-179 |
70 | 5 | ICb | Interstitial cells b | combined | PRICKLE1 | 144165 | 17019 | 0.87 | 0.36 | 0.05 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | IGF2 | 3481 | 5466 | 0.87 | 0.89 | 0.48 | 8.11102560507936e-254 | 2.73292896737544e-249 |
70 | 5 | ICb | Interstitial cells b | combined | VCAN | 1462 | 2464 | 0.86 | 0.74 | 0.38 | 2.3817157751576e-211 | 8.02495313281602e-207 |
70 | 5 | ICb | Interstitial cells b | combined | BASP1 | 10409 | 957 | 0.85 | 0.61 | 0.33 | 1.05982942605061e-155 | 3.57098926813494e-151 |
70 | 5 | ICb | Interstitial cells b | combined | NR2F2-AS1 | 644192 | 44222 | 0.84 | 0.47 | 0.15 | 1.60414185042156e-210 | 5.40499555081041e-206 |
70 | 5 | ICb | Interstitial cells b | combined | ALDH1A2 | 8854 | 15472 | 0.82 | 0.5 | 0.26 | 2.79811056711943e-118 | 9.42795374485222e-114 |
70 | 5 | ICb | Interstitial cells b | combined | NKAIN4 | 128414 | 16191 | 0.82 | 0.49 | 0.19 | 1.48391076591768e-164 | 4.99988893468305e-160 |
70 | 5 | ICb | Interstitial cells b | combined | COL5A1 | 1289 | 2209 | 0.81 | 0.33 | 0.05 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | ANGPT1 | 284 | 484 | 0.8 | 0.31 | 0.05 | 3.11827041060699e-284 | 1.05067003214992e-279 |
70 | 5 | ICb | Interstitial cells b | combined | SH3BGRL | 6451 | 10823 | 0.8 | 0.71 | 0.48 | 1.16467466216232e-168 | 3.92425480668971e-164 |
70 | 5 | ICb | Interstitial cells b | combined | EDNRA | 1909 | 3179 | 0.8 | 0.35 | 0.06 | 1.87352070888588e-269 | 6.31264067652008e-265 |
70 | 5 | ICb | Interstitial cells b | combined | TCF21 | 6943 | 11632 | 0.79 | 0.94 | 0.45 | 2.35963114609794e-268 | 7.95054118366239e-264 |
70 | 5 | ICb | Interstitial cells b | combined | ACTA2 | 59 | 130 | 0.79 | 0.25 | 0.06 | 2.64730263743449e-129 | 8.91982150657177e-125 |
70 | 5 | ICb | Interstitial cells b | combined | CAVIN1 | 284119 | 9688 | 0.79 | 0.33 | 0.06 | 1.03779125971312e-232 | 3.4967338704774e-228 |
70 | 5 | ICb | Interstitial cells b | combined | CPED1 | 79974 | 26159 | 0.78 | 0.3 | 0.03 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | NCAM1 | 4684 | 7656 | 0.78 | 0.43 | 0.16 | 1.63794971932474e-154 | 5.51890778429278e-150 |
70 | 5 | ICb | Interstitial cells b | combined | IGFBP7 | 3490 | 5476 | 0.78 | 0.94 | 0.53 | 5.23309541897293e-279 | 1.76323917046874e-274 |
70 | 5 | ICb | Interstitial cells b | combined | KCNQ1OT1 | 10984 | 6295 | 0.78 | 0.72 | 0.48 | 1.32476915446827e-143 | 4.4636771890654e-139 |
70 | 5 | ICb | Interstitial cells b | combined | NR2F2 | 7026 | 7976 | 0.78 | 0.87 | 0.62 | 3.24224666278948e-220 | 1.09244259056029e-215 |
70 | 5 | ICb | Interstitial cells b | combined | IGF1 | 3479 | 5464 | 0.76 | 0.17 | 0.007 | 0 | 0 |
70 | 5 | ICb | Interstitial cells b | combined | RBP1 | 5947 | 9919 | 0.75 | 0.87 | 0.52 | 3.09857876940603e-215 | 1.04403513056367e-210 |
70 | 5 | ICb | Interstitial cells b | combined | TBX3 | 6926 | 11602 | 0.74 | 0.3 | 0.05 | 5.0567533263453e-260 | 1.70382246577879e-255 |
70 | 5 | ICb | Interstitial cells b | combined | COL6A1 | 1291 | 2211 | 0.74 | 0.49 | 0.24 | 7.30124802723155e-119 | 2.4600825102954e-114 |
70 | 5 | ICb | Interstitial cells b | combined | FBN2 | 2201 | 3604 | 0.73 | 0.31 | 0.07 | 2.95869548550892e-184 | 9.96902856887375e-180 |
70 | 5 | ICb | Interstitial cells b | combined | GPM6B | 2824 | 4461 | 0.73 | 0.33 | 0.12 | 6.86477040523831e-107 | 2.313015740341e-102 |
70 | 5 | ICb | Interstitial cells b | combined | CRABP1 | 1381 | 2338 | 0.73 | 0.26 | 0.04 | 4.4513084150484e-201 | 1.49982385736641e-196 |
70 | 5 | ICb | Interstitial cells b | combined | NFIA | 4774 | 7784 | 0.72 | 0.31 | 0.06 | 2.86628895584514e-206 | 9.65767400782461e-202 |
70 | 5 | ICb | Interstitial cells b | combined | MYH10 | 4628 | 7568 | 0.72 | 0.55 | 0.32 | 5.73385949241999e-117 | 1.93196661737599e-112 |
70 | 5 | ICb | Interstitial cells b | combined | CHST2 | 9435 | 1970 | 0.72 | 0.31 | 0.07 | 2.32335402739392e-178 | 7.82830905990108e-174 |