Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: combined
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
70 | 4 | ICa | Interstitial cells a | combined | LGALS1 | 3956 | 6561 | 1.78 | 0.96 | 0.2 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | COL1A1 | 1277 | 2197 | 1.46 | 0.87 | 0.19 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | COL1A2 | 1278 | 2198 | 1.45 | 0.86 | 0.17 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | TPM2 | 7169 | 12011 | 1.39 | 0.82 | 0.2 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | TAGLN | 6876 | 11553 | 1.38 | 0.57 | 0.08 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | PCOLCE | 5118 | 8738 | 1.35 | 0.79 | 0.1 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | MFAP4 | 4239 | 7035 | 1.31 | 0.74 | 0.13 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | SULT1E1 | 6783 | 11377 | 1.24 | 0.67 | 0.13 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | ACTA2 | 59 | 130 | 1.23 | 0.38 | 0.05 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | CYP1B1 | 1545 | 2597 | 1.23 | 0.6 | 0.11 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | PTN | 5764 | 9630 | 1.2 | 0.75 | 0.33 | 8.35882905024752e-238 | 2.8164238601904e-233 |
70 | 4 | ICa | Interstitial cells a | combined | OLFML3 | 56944 | 24956 | 1.18 | 0.68 | 0.09 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | CALD1 | 800 | 1441 | 1.11 | 0.91 | 0.52 | 4.474511716563e-290 | 1.50764197777874e-285 |
70 | 4 | ICa | Interstitial cells a | combined | CTSC | 1075 | 2528 | 1.11 | 0.76 | 0.24 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | COL3A1 | 1281 | 2201 | 1.11 | 0.84 | 0.31 | 3.50395472645981e-280 | 1.18062250553337e-275 |
70 | 4 | ICa | Interstitial cells a | combined | CLDN11 | 5010 | 8514 | 1.05 | 0.53 | 0.1 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | MEG3 | 55384 | 14575 | 1.04 | 0.7 | 0.18 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | TNC | 3371 | 5318 | 1.04 | 0.54 | 0.07 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | PLAC9 | 219348 | 19255 | 1.01 | 0.51 | 0.05 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | TGFBI | 7045 | 11771 | 1.01 | 0.53 | 0.07 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | COL6A3 | 1293 | 2213 | 1.01 | 0.61 | 0.1 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | IGF2 | 3481 | 5466 | 1.01 | 0.93 | 0.49 | 4.43930446775252e-267 | 1.49577924736453e-262 |
70 | 4 | ICa | Interstitial cells a | combined | EMCN | 51705 | 16041 | 1.01 | 0.55 | 0.07 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | EMILIN1 | 11117 | 19880 | 0.96 | 0.59 | 0.11 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | MMP2 | 4313 | 7166 | 0.93 | 0.53 | 0.09 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | FBLN5 | 10516 | 3602 | 0.92 | 0.46 | 0.07 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | MOXD1 | 26002 | 21063 | 0.92 | 0.54 | 0.09 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | IGFBP5 | 3488 | 5474 | 0.91 | 0.53 | 0.12 | 1.89270790838439e-266 | 6.37729002651037e-262 |
70 | 4 | ICa | Interstitial cells a | combined | PRSS23 | 11098 | 14370 | 0.91 | 0.54 | 0.13 | 1.0964174870277e-259 | 3.69426908079113e-255 |
70 | 4 | ICa | Interstitial cells a | combined | POSTN | 10631 | 16953 | 0.89 | 0.3 | 0.03 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | ITM2A | 9452 | 6173 | 0.87 | 0.36 | 0.06 | 4.95447893572853e-248 | 1.66936213260437e-243 |
70 | 4 | ICa | Interstitial cells a | combined | COL6A2 | 1292 | 2212 | 0.85 | 0.54 | 0.12 | 3.86261575728168e-291 | 1.30146975325849e-286 |
70 | 4 | ICa | Interstitial cells a | combined | MDFI | 4188 | 6967 | 0.84 | 0.49 | 0.08 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | SNAI2 | 6591 | 11094 | 0.83 | 0.45 | 0.1 | 5.34217373309828e-232 | 1.79999201763013e-227 |
70 | 4 | ICa | Interstitial cells a | combined | PDGFRA | 5156 | 8803 | 0.82 | 0.47 | 0.06 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | FST | 10468 | 3971 | 0.81 | 0.29 | 0.05 | 1.01165196682322e-194 | 3.40866013701415e-190 |
70 | 4 | ICa | Interstitial cells a | combined | COL21A1 | 81578 | 17025 | 0.79 | 0.43 | 0.05 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | DCN | 1634 | 2705 | 0.78 | 0.45 | 0.14 | 4.3227535433376e-147 | 1.45650857889217e-142 |
70 | 4 | ICa | Interstitial cells a | combined | JUNB | 3726 | 6205 | 0.78 | 0.72 | 0.52 | 7.35236654730199e-87 | 2.47730638444793e-82 |
70 | 4 | ICa | Interstitial cells a | combined | SFRP1 | 6422 | 10776 | 0.78 | 0.38 | 0.12 | 1.90855991450313e-124 | 6.43070177592683e-120 |
70 | 4 | ICa | Interstitial cells a | combined | MGP | 4256 | 7060 | 0.77 | 0.16 | 0.01 | 1.08667968556706e-189 | 3.66145853254964e-185 |
70 | 4 | ICa | Interstitial cells a | combined | EDNRA | 1909 | 3179 | 0.77 | 0.41 | 0.06 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | LDB2 | 9079 | 6533 | 0.76 | 0.42 | 0.06 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | FN1 | 2335 | 3778 | 0.75 | 0.45 | 0.1 | 4.17628257832281e-231 | 1.40715665194009e-226 |
70 | 4 | ICa | Interstitial cells a | combined | SERPINH1 | 871 | 1546 | 0.75 | 0.85 | 0.56 | 1.89471003413328e-169 | 6.38403598900867e-165 |
70 | 4 | ICa | Interstitial cells a | combined | LRRC17 | 10234 | 16895 | 0.74 | 0.41 | 0.06 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | C12orf57 | 113246 | 29521 | 0.74 | 0.76 | 0.44 | 1.21842693381993e-157 | 4.10536771081287e-153 |
70 | 4 | ICa | Interstitial cells a | combined | CPE | 1363 | 2303 | 0.74 | 0.48 | 0.18 | 1.38540688080259e-125 | 4.66798994417626e-121 |
70 | 4 | ICa | Interstitial cells a | combined | RBP1 | 5947 | 9919 | 0.74 | 0.9 | 0.52 | 1.38692114792063e-183 | 4.67309211580376e-179 |
70 | 4 | ICa | Interstitial cells a | combined | B2M | 567 | 914 | 0.74 | 0.97 | 0.69 | 3.10179542807972e-238 | 1.04511895153718e-233 |
70 | 4 | ICa | Interstitial cells a | combined | C11orf96 | 387763 | 38675 | 0.74 | 0.31 | 0.05 | 3.75084416676221e-241 | 1.26380943354886e-236 |
70 | 4 | ICa | Interstitial cells a | combined | MEIS2 | 4212 | 7001 | 0.73 | 0.69 | 0.31 | 6.63120082345699e-155 | 2.2343168054556e-150 |
70 | 4 | ICa | Interstitial cells a | combined | MARCKS | 4082 | 6759 | 0.73 | 0.91 | 0.63 | 2.51642216505582e-178 | 8.47883284293909e-174 |
70 | 4 | ICa | Interstitial cells a | combined | AGTR2 | 186 | 338 | 0.73 | 0.33 | 0.04 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | COL5A2 | 1290 | 2210 | 0.72 | 0.42 | 0.08 | 1.35324057220187e-270 | 4.55960878397698e-266 |
70 | 4 | ICa | Interstitial cells a | combined | FLRT2 | 23768 | 3761 | 0.71 | 0.42 | 0.1 | 5.89448870212494e-202 | 1.98608902329398e-197 |
70 | 4 | ICa | Interstitial cells a | combined | ZFP36 | 7538 | 12862 | 0.71 | 0.44 | 0.22 | 9.4436080848749e-68 | 3.18192930811775e-63 |
70 | 4 | ICa | Interstitial cells a | combined | GUCY1A1 | 2982 | 4685 | 0.71 | 0.41 | 0.09 | 1.81253452622887e-213 | 6.10715383267555e-209 |
70 | 4 | ICa | Interstitial cells a | combined | SLC2A3 | 6515 | 11007 | 0.71 | 0.4 | 0.08 | 3.02277525280616e-211 | 1.01849389368051e-206 |
70 | 4 | ICa | Interstitial cells a | combined | ALX1 | 8092 | 1494 | 0.71 | 0.37 | 0.05 | 4.12627143779069e-283 | 1.39030589824919e-278 |
70 | 4 | ICa | Interstitial cells a | combined | FGF7 | 2252 | 3685 | 0.7 | 0.31 | 0.03 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | RPS12 | 6206 | 10385 | 0.7 | 1 | 0.97 | 1.75554828072549e-302 | 5.91514437707646e-298 |
70 | 4 | ICa | Interstitial cells a | combined | CAVIN1 | 284119 | 9688 | 0.69 | 0.36 | 0.06 | 2.14867193067498e-236 | 7.23973520321628e-232 |
70 | 4 | ICa | Interstitial cells a | combined | STAT3 | 6774 | 11364 | 0.68 | 0.64 | 0.34 | 5.96403566702051e-109 | 2.00952217764589e-104 |
70 | 4 | ICa | Interstitial cells a | combined | FOS | 2353 | 3796 | 0.68 | 0.89 | 0.75 | 4.59127110141239e-96 | 1.54698288490989e-91 |
70 | 4 | ICa | Interstitial cells a | combined | BASP1 | 10409 | 957 | 0.66 | 0.6 | 0.33 | 6.99840715617547e-95 | 2.35804330720176e-90 |
70 | 4 | ICa | Interstitial cells a | combined | TPM4 | 7171 | 12013 | 0.66 | 0.68 | 0.38 | 5.63185166723859e-119 | 1.89759610075937e-114 |
70 | 4 | ICa | Interstitial cells a | combined | C7 | 730 | 1346 | 0.66 | 0.27 | 0.03 | 1.27426096375344e-264 | 4.29349489127084e-260 |
70 | 4 | ICa | Interstitial cells a | combined | KLF2 | 10365 | 6347 | 0.65 | 0.29 | 0.06 | 1.29057336592933e-167 | 4.34845789916229e-163 |
70 | 4 | ICa | Interstitial cells a | combined | RPL28 | 6158 | 10330 | 0.65 | 0.99 | 0.92 | 7.23878109153678e-205 | 2.4390349009824e-200 |
70 | 4 | ICa | Interstitial cells a | combined | RARRES2 | 5919 | 9868 | 0.65 | 0.39 | 0.13 | 5.31193458084359e-118 | 1.78980323766944e-113 |
70 | 4 | ICa | Interstitial cells a | combined | NFIA | 4774 | 7784 | 0.65 | 0.34 | 0.06 | 2.0319733382325e-203 | 6.84653096584058e-199 |
70 | 4 | ICa | Interstitial cells a | combined | ZEB2 | 9839 | 14881 | 0.64 | 0.52 | 0.18 | 2.45734297649259e-158 | 8.27977142499413e-154 |
70 | 4 | ICa | Interstitial cells a | combined | PCDH18 | 54510 | 14268 | 0.64 | 0.42 | 0.1 | 1.24189356449816e-193 | 4.18443617622011e-189 |
70 | 4 | ICa | Interstitial cells a | combined | CCL2 | 6347 | 10618 | 0.64 | 0.21 | 0.03 | 6.47620521949773e-144 | 2.18209258665756e-139 |
70 | 4 | ICa | Interstitial cells a | combined | TMSB4X | 7114 | 11881 | 0.63 | 1 | 0.99 | 1.28480554122694e-193 | 4.32902379061004e-189 |
70 | 4 | ICa | Interstitial cells a | combined | MYH10 | 4628 | 7568 | 0.63 | 0.59 | 0.32 | 2.49885453105314e-97 | 8.41964045693046e-93 |
70 | 4 | ICa | Interstitial cells a | combined | AKAP12 | 9590 | 370 | 0.62 | 0.73 | 0.38 | 3.60740021446687e-130 | 1.21547742826247e-125 |
70 | 4 | ICa | Interstitial cells a | combined | TGFB1I1 | 7041 | 11767 | 0.62 | 0.41 | 0.1 | 5.77986792931086e-171 | 1.947468700102e-166 |
70 | 4 | ICa | Interstitial cells a | combined | CHODL | 140578 | 17807 | 0.62 | 0.2 | 0.03 | 1.8826839881829e-125 | 6.34351542978345e-121 |
70 | 4 | ICa | Interstitial cells a | combined | NR2F2-AS1 | 644192 | 44222 | 0.62 | 0.44 | 0.15 | 1.39016188641417e-127 | 4.6840114600839e-123 |
70 | 4 | ICa | Interstitial cells a | combined | BGN | 633 | 1044 | 0.61 | 0.48 | 0.18 | 3.38914749029955e-116 | 1.14193935538153e-111 |
70 | 4 | ICa | Interstitial cells a | combined | GPC3 | 2719 | 4451 | 0.61 | 0.93 | 0.77 | 4.43115246149879e-123 | 1.4930325103774e-118 |
70 | 4 | ICa | Interstitial cells a | combined | CCN1 | 3491 | 2654 | 0.6 | 0.78 | 0.57 | 9.44042132465033e-76 | 3.18085556112768e-71 |
70 | 4 | ICa | Interstitial cells a | combined | ALDH1A2 | 8854 | 15472 | 0.6 | 0.49 | 0.26 | 5.71982686037676e-72 | 1.92723846233534e-67 |
70 | 4 | ICa | Interstitial cells a | combined | GNAS | 2778 | 4392 | 0.59 | 0.74 | 0.66 | 3.56214171021238e-34 | 1.20022802783896e-29 |
70 | 4 | ICa | Interstitial cells a | combined | HOPX | 84525 | 24961 | 0.59 | 0.24 | 0.03 | 5.89603732803616e-224 | 1.9866108173085e-219 |
70 | 4 | ICa | Interstitial cells a | combined | CNN2 | 1265 | 2156 | 0.59 | 0.6 | 0.34 | 6.89295986590467e-82 | 2.32251389721792e-77 |
70 | 4 | ICa | Interstitial cells a | combined | RPL30 | 6156 | 10333 | 0.59 | 1 | 0.96 | 1.61020370459224e-236 | 5.42542036225308e-232 |
70 | 4 | ICa | Interstitial cells a | combined | HIC1 | 3090 | 4909 | 0.59 | 0.28 | 0.03 | 0 | 0 |
70 | 4 | ICa | Interstitial cells a | combined | PDGFRB | 5159 | 8804 | 0.59 | 0.3 | 0.07 | 2.21752757159203e-131 | 7.47173739972218e-127 |
70 | 4 | ICa | Interstitial cells a | combined | NTM | 50863 | 17941 | 0.58 | 0.34 | 0.08 | 1.14276981639682e-165 | 3.85044861936746e-161 |
70 | 4 | ICa | Interstitial cells a | combined | HSPB1 | 3315 | 5246 | 0.58 | 0.77 | 0.56 | 8.0518198651751e-78 | 2.7129801853721e-73 |
70 | 4 | ICa | Interstitial cells a | combined | KCNE4 | 23704 | 6244 | 0.58 | 0.21 | 0.02 | 1.36117111877316e-223 | 4.58632996759427e-219 |
70 | 4 | ICa | Interstitial cells a | combined | CRABP1 | 1381 | 2338 | 0.58 | 0.23 | 0.05 | 1.10704835784005e-116 | 3.73008873690627e-112 |
70 | 4 | ICa | Interstitial cells a | combined | ATP2B1 | 490 | 814 | 0.58 | 0.7 | 0.48 | 1.15165448743967e-82 | 3.88038462997921e-78 |
70 | 4 | ICa | Interstitial cells a | combined | OGN | 4969 | 8126 | 0.58 | 0.25 | 0.03 | 2.53952000573454e-181 | 8.55665870732197e-177 |
70 | 4 | ICa | Interstitial cells a | combined | PBX1 | 5087 | 8632 | 0.57 | 0.59 | 0.32 | 2.50693391246829e-88 | 8.44686312467065e-84 |
70 | 4 | ICa | Interstitial cells a | combined | CDC42EP5 | 148170 | 17408 | 0.57 | 0.27 | 0.03 | 3.91489263986892e-251 | 1.31908392607743e-246 |
70 | 4 | ICa | Interstitial cells a | combined | SYT1 | 6857 | 11509 | 0.56 | 0.4 | 0.14 | 9.3872583542015e-102 | 3.16294282986465e-97 |