Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: combined
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
70 | 3 | ErPrT | Early proximal tubule | combined | APOE | 348 | 613 | 2.7 | 0.98 | 0.21 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | APOA1 | 335 | 600 | 2.1 | 0.5 | 0.03 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | APOM | 55937 | 13916 | 2.09 | 0.81 | 0.06 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | SMIM24 | 284422 | 37244 | 2.07 | 0.93 | 0.08 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | LINC01781 | 101927412 | 52571 | 2.03 | 0.83 | 0.06 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | SPP1 | 6696 | 11255 | 1.86 | 0.65 | 0.09 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | FTL | 2512 | 3999 | 1.86 | 1 | 0.96 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | GPX3 | 2878 | 4555 | 1.62 | 0.74 | 0.11 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | GLYATL1 | 92292 | 30519 | 1.62 | 0.69 | 0.04 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | CUBN | 8029 | 2548 | 1.59 | 0.76 | 0.01 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | AMN | 81693 | 14604 | 1.59 | 0.8 | 0.03 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | AFP | 174 | 317 | 1.48 | 0.56 | 0.01 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | MPC2 | 25874 | 24515 | 1.46 | 0.97 | 0.43 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | SLC5A8 | 160728 | 19119 | 1.39 | 0.59 | 0.02 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | MSRB1 | 51734 | 14133 | 1.39 | 0.81 | 0.22 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | RIDA | 10247 | 16897 | 1.39 | 0.84 | 0.19 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | PDZK1 | 5174 | 8821 | 1.37 | 0.73 | 0.06 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | FXYD2 | 486 | 4026 | 1.36 | 0.75 | 0.1 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | DAB2 | 1601 | 2662 | 1.35 | 0.9 | 0.21 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | SLC3A1 | 6519 | 11025 | 1.3 | 0.69 | 0.04 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | SERPINF1 | 5176 | 8824 | 1.27 | 0.72 | 0.13 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | GATM | 2628 | 4175 | 1.27 | 0.57 | 0.04 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | DSEL | 92126 | 18144 | 1.24 | 0.67 | 0.09 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | CARMIL1 | 55604 | 21581 | 1.22 | 0.62 | 0.09 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | C1QTNF3 | 114899 | 14326 | 1.18 | 0.54 | 0.11 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | ETFB | 2109 | 3482 | 1.15 | 0.88 | 0.4 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | AKR1C3 | 8644 | 386 | 1.14 | 0.6 | 0.04 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | GCHFR | 2644 | 4194 | 1.13 | 0.71 | 0.15 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | BHMT | 635 | 1047 | 1.13 | 0.5 | 0.02 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | ATP6V1F | 9296 | 16832 | 1.13 | 0.94 | 0.51 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | CYBA | 1535 | 2577 | 1.13 | 0.9 | 0.44 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | TMEM176A | 55365 | 24930 | 1.1 | 0.66 | 0.06 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | ACAA2 | 10449 | 83 | 1.09 | 0.85 | 0.32 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | LGALS2 | 3957 | 6562 | 1.09 | 0.6 | 0.04 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | PSMA2 | 5683 | 9531 | 1.08 | 0.89 | 0.69 | 7.95196212210288e-167 | 2.67933411742134e-162 |
70 | 3 | ErPrT | Early proximal tubule | combined | S100A10 | 6281 | 10487 | 1.08 | 0.88 | 0.26 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | ATP1B1 | 481 | 804 | 1.08 | 0.83 | 0.3 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | C11orf54 | 28970 | 30204 | 1.07 | 0.74 | 0.22 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | UGT3A1 | 133688 | 26625 | 1.07 | 0.56 | 0.04 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | ANXA4 | 307 | 542 | 1.07 | 0.77 | 0.25 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | ALDH6A1 | 4329 | 7179 | 1.07 | 0.72 | 0.21 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | GK | 2710 | 4289 | 1.05 | 0.63 | 0.07 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | KCNJ15 | 3772 | 6261 | 1.05 | 0.55 | 0.06 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | TNFSF10 | 8743 | 11925 | 1.03 | 0.42 | 0.02 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | FLRT3 | 23767 | 3762 | 1.03 | 0.75 | 0.23 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | GLYAT | 10249 | 13734 | 1.01 | 0.49 | 0.007 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | HPN | 3249 | 5155 | 1.01 | 0.58 | 0.05 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | DNPH1 | 10591 | 21218 | 1 | 0.86 | 0.37 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | CHCHD10 | 400916 | 15559 | 1 | 0.77 | 0.24 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | ALDH1A1 | 216 | 402 | 0.98 | 0.64 | 0.12 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | CRYL1 | 51084 | 18246 | 0.97 | 0.64 | 0.12 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | TMEM176B | 28959 | 29596 | 0.97 | 0.61 | 0.06 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | DBI | 1622 | 2690 | 0.97 | 0.88 | 0.43 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | LRP2 | 4036 | 6694 | 0.97 | 0.51 | 0.03 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | GLS | 2744 | 4331 | 0.96 | 0.66 | 0.17 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | CYB5A | 1528 | 2570 | 0.95 | 0.91 | 0.42 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | ADAMTS9-AS1 | 101929335 | 40625 | 0.95 | 0.53 | 0.04 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | AIG1 | 51390 | 21607 | 0.94 | 0.76 | 0.26 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | UGT2A3 | 79799 | 28528 | 0.92 | 0.41 | 0.01 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | HAO2 | 51179 | 4810 | 0.91 | 0.41 | 0.004 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | SLC13A1 | 6561 | 10916 | 0.91 | 0.42 | 0.01 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | PPP1R16A | 84988 | 14941 | 0.9 | 0.78 | 0.31 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | CA2 | 760 | 1373 | 0.88 | 0.52 | 0.11 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | TUBB4B | 10383 | 20771 | 0.88 | 0.94 | 0.62 | 7.42436926097734e-289 | 2.5015669787937e-284 |
70 | 3 | ErPrT | Early proximal tubule | combined | CYP27A1 | 1593 | 2605 | 0.88 | 0.47 | 0.05 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | MDH1 | 4190 | 6970 | 0.88 | 0.91 | 0.54 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | POMC | 5443 | 9201 | 0.86 | 0.47 | 0.09 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | ATP5IF1 | 93974 | 871 | 0.86 | 0.95 | 0.68 | 4.67255611205711e-303 | 1.57437105639652e-298 |
70 | 3 | ErPrT | Early proximal tubule | combined | BNIP3 | 664 | 1084 | 0.85 | 0.78 | 0.32 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | HGD | 3081 | 4892 | 0.85 | 0.47 | 0.03 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | CEBPD | 1052 | 1835 | 0.84 | 0.79 | 0.32 | 3.63071789610054e-292 | 1.22333408791212e-287 |
70 | 3 | ErPrT | Early proximal tubule | combined | SLC27A2 | 11001 | 10996 | 0.83 | 0.45 | 0.06 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | TMEM256 | 254863 | 28618 | 0.83 | 0.7 | 0.26 | 3.63096338651588e-291 | 1.22341680345266e-286 |
70 | 3 | ErPrT | Early proximal tubule | combined | CLEC18B | 497190 | 33849 | 0.83 | 0.55 | 0.11 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | SLC39A4 | 55630 | 17129 | 0.83 | 0.52 | 0.12 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | UGCG | 7357 | 12524 | 0.82 | 0.62 | 0.19 | 1.57304477762178e-303 | 5.30021707371881e-299 |
70 | 3 | ErPrT | Early proximal tubule | combined | SLC39A5 | 283375 | 20502 | 0.81 | 0.45 | 0.01 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | OCIAD2 | 132299 | 28685 | 0.81 | 0.84 | 0.45 | 2.79338907988127e-258 | 9.41204516575194e-254 |
70 | 3 | ErPrT | Early proximal tubule | combined | GJB1 | 2705 | 4283 | 0.8 | 0.47 | 0.04 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | FMO1 | 2326 | 3769 | 0.8 | 0.43 | 0.01 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | DPP4 | 1803 | 3009 | 0.8 | 0.56 | 0.12 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | RBM47 | 54502 | 30358 | 0.8 | 0.62 | 0.16 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | ASRGL1 | 80150 | 16448 | 0.8 | 0.54 | 0.14 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | PTGR1 | 22949 | 18429 | 0.79 | 0.78 | 0.39 | 4.67353388922453e-237 | 1.57470050863531e-232 |
70 | 3 | ErPrT | Early proximal tubule | combined | BBOX1 | 8424 | 964 | 0.79 | 0.35 | 0.004 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | DPYS | 1807 | 3013 | 0.79 | 0.38 | 0.01 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | VCAN | 1462 | 2464 | 0.79 | 0.8 | 0.37 | 2.00801720938162e-247 | 6.76581318529044e-243 |
70 | 3 | ErPrT | Early proximal tubule | combined | BIN1 | 274 | 1052 | 0.79 | 0.73 | 0.32 | 7.43281573564041e-253 | 2.50441293396668e-248 |
70 | 3 | ErPrT | Early proximal tubule | combined | NIT2 | 56954 | 29878 | 0.79 | 0.58 | 0.19 | 1.0479393350669e-262 | 3.53092679557442e-258 |
70 | 3 | ErPrT | Early proximal tubule | combined | TMEM150A | 129303 | 24677 | 0.78 | 0.53 | 0.1 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | SERPINF2 | 5345 | 9075 | 0.77 | 0.45 | 0.08 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | LAMTOR5 | 10542 | 17955 | 0.77 | 0.92 | 0.65 | 2.49614340827707e-269 | 8.41050559984877e-265 |
70 | 3 | ErPrT | Early proximal tubule | combined | SLC16A4 | 9122 | 10925 | 0.76 | 0.41 | 0.03 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | AK4 | 205 | 363 | 0.75 | 0.43 | 0.04 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | ACMSD | 130013 | 19288 | 0.75 | 0.4 | 0.01 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | SLC44A4 | 80736 | 13941 | 0.75 | 0.42 | 0.04 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | SNHG8 | 100093630 | 33098 | 0.75 | 0.84 | 0.45 | 3.65159438802594e-244 | 1.23036821310146e-239 |
70 | 3 | ErPrT | Early proximal tubule | combined | KLF6 | 1316 | 2235 | 0.73 | 0.6 | 0.43 | 1.32566182617512e-59 | 4.46668495711444e-55 |
70 | 3 | ErPrT | Early proximal tubule | combined | BICC1 | 80114 | 19351 | 0.73 | 0.48 | 0.11 | 0 | 0 |
70 | 3 | ErPrT | Early proximal tubule | combined | AKR1A1 | 10327 | 380 | 0.72 | 0.8 | 0.47 | 5.5339374689681e-210 | 1.86460489079411e-205 |