Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: combined
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | PHLDA2 | 7262 | 12385 | 2.38 | 0.8 | 0.01 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | WFDC2 | 10406 | 15939 | 2.35 | 0.97 | 0.2 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | AQP2 | 359 | 634 | 2.2 | 0.8 | 0.003 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | SPINK1 | 6690 | 11244 | 2.12 | 0.3 | 0.002 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CLDN4 | 1364 | 2046 | 2.07 | 0.96 | 0.12 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CYB5A | 1528 | 2570 | 1.91 | 0.99 | 0.44 | 1.03251190391504e-233 | 3.47894560905133e-229 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | ADH1C | 126 | 251 | 1.91 | 0.78 | 0.009 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | KRT8 | 3856 | 6446 | 1.88 | 0.97 | 0.23 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | S100A6 | 6277 | 10496 | 1.83 | 0.94 | 0.46 | 2.87503705828019e-129 | 9.68714986416928e-125 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | KRT18 | 3875 | 6430 | 1.79 | 0.97 | 0.33 | 3.62679150884343e-237 | 1.2220111309897e-232 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | S100A11 | 6282 | 10488 | 1.79 | 0.97 | 0.42 | 4.52668834866765e-219 | 1.52522237220008e-214 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | SAT1 | 6303 | 10540 | 1.78 | 0.97 | 0.44 | 1.33131999309997e-202 | 4.48574958475104e-198 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | KRT19 | 3880 | 6436 | 1.77 | 0.96 | 0.32 | 4.83211543959925e-233 | 1.62813297621857e-228 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CLU | 1191 | 2095 | 1.76 | 0.9 | 0.22 | 1.00519942515672e-263 | 3.38691894312304e-259 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | TACSTD2 | 4070 | 11530 | 1.68 | 0.8 | 0.03 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | ATF3 | 467 | 785 | 1.61 | 0.92 | 0.23 | 1.3454197623398e-254 | 4.53325734722773e-250 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | ELF3 | 1999 | 3318 | 1.54 | 0.89 | 0.17 | 1.67780184565557e-292 | 5.65318553875187e-288 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CTSH | 1512 | 2535 | 1.47 | 0.85 | 0.08 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | ELF5 | 2001 | 3320 | 1.47 | 0.77 | 0.003 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | AGR2 | 10551 | 328 | 1.47 | 0.75 | 0.007 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CAPS | 828 | 1487 | 1.45 | 0.8 | 0.02 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | TMEM176A | 55365 | 24930 | 1.42 | 0.85 | 0.09 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | GSTM3 | 2947 | 4635 | 1.41 | 0.93 | 0.24 | 2.17094027688505e-259 | 7.31476616893647e-255 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CLDN3 | 1365 | 2045 | 1.33 | 0.86 | 0.28 | 1.320871979919e-165 | 4.45054604913908e-161 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | HMGCS2 | 3158 | 5008 | 1.31 | 0.61 | 0.009 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | DHRS2 | 10202 | 18349 | 1.3 | 0.31 | 0.02 | 6.16290916006215e-197 | 2.07653061239134e-192 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | FXYD3 | 5349 | 4027 | 1.29 | 0.61 | 0.006 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | GATA3 | 2625 | 4172 | 1.29 | 0.73 | 0.03 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | SDF2L1 | 23753 | 10676 | 1.28 | 0.79 | 0.24 | 7.75956240829194e-157 | 2.61450695784989e-152 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CALB1 | 793 | 1434 | 1.28 | 0.5 | 0.003 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | TNFRSF12A | 51330 | 18152 | 1.26 | 0.76 | 0.12 | 1.57460913682382e-259 | 5.30548802561417e-255 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | HPGD | 3248 | 5154 | 1.25 | 0.57 | 0.05 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | MMP7 | 4316 | 7174 | 1.24 | 0.59 | 0.009 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | HERPUD1 | 9709 | 13744 | 1.23 | 0.95 | 0.56 | 2.38691294728167e-127 | 8.04246448457086e-123 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | ADIRF | 10974 | 24043 | 1.2 | 0.21 | 0.01 | 3.41095923086624e-223 | 1.14928860324807e-218 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | TMEM176B | 28959 | 29596 | 1.18 | 0.8 | 0.09 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | KLF6 | 1316 | 2235 | 1.17 | 0.92 | 0.43 | 1.29113108840036e-136 | 4.35033708925619e-132 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | SCIN | 85477 | 21695 | 1.15 | 0.73 | 0.04 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | BTG2 | 7832 | 1131 | 1.13 | 0.92 | 0.35 | 1.92764969152047e-148 | 6.49502287060907e-144 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CD9 | 928 | 1709 | 1.13 | 0.89 | 0.35 | 6.36871282632113e-138 | 2.14587409970064e-133 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | AOC1 | 26 | 80 | 1.09 | 0.62 | 0.004 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | GDF15 | 9518 | 30142 | 1.07 | 0.43 | 0.01 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | KRT7 | 3855 | 6445 | 1.07 | 0.3 | 0.002 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | SNCG | 6623 | 11141 | 1.05 | 0.22 | 0.01 | 5.20190953439029e-216 | 1.75273139851747e-211 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | AHI1 | 54806 | 21575 | 1.05 | 0.76 | 0.13 | 1.20346687694508e-252 | 4.05496129517876e-248 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | S100A10 | 6281 | 10487 | 1.04 | 0.92 | 0.29 | 1.56694016714955e-159 | 5.27964819919369e-155 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | LMNA | 4000 | 6636 | 1.04 | 0.93 | 0.44 | 1.70809640489339e-129 | 5.75526002664778e-125 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | MAL | 4118 | 6817 | 1.03 | 0.68 | 0.1 | 3.53091935799527e-234 | 1.18970796848292e-229 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | GATA2 | 2624 | 4171 | 1.02 | 0.57 | 0.03 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | STC1 | 6781 | 11373 | 1.01 | 0.53 | 0.03 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | MAFF | 23764 | 6780 | 1 | 0.79 | 0.21 | 1.38478413978561e-157 | 4.66589168059364e-153 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | TSPAN1 | 10103 | 20657 | 1 | 0.63 | 0.01 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | LOC102724889 | 102724889 | NULL | 0.99 | 0.58 | 0.04 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CYSTM1 | 84418 | 30239 | 0.99 | 0.87 | 0.28 | 5.00994893226181e-158 | 1.6880521932363e-153 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | ZNF44 | 51710 | 13110 | 0.98 | 0.71 | 0.08 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | ND3 | 4537 | 7458 | 0.96 | 0.99 | 0.77 | 5.73257337312405e-130 | 1.93153327234042e-125 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | PTGER1 | 5731 | 9593 | 0.94 | 0.49 | 0.006 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | SMIM22 | 440335 | 48329 | 0.93 | 0.59 | 0.003 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | C9orf16 | 79095 | 17823 | 0.92 | 0.89 | 0.43 | 5.13123940436849e-98 | 1.72891980490792e-93 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | JUND | 3727 | 6206 | 0.92 | 0.76 | 0.17 | 1.9243723774001e-172 | 6.4839802884119e-168 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | GMNN | 51053 | 17493 | 0.92 | 0.77 | 0.23 | 2.46341306002107e-129 | 8.30022396443498e-125 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | UQCRQ | 27089 | 29594 | 0.92 | 0.95 | 0.64 | 2.79127669739847e-97 | 9.4049277042144e-93 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | BLVRB | 645 | 1063 | 0.89 | 0.74 | 0.13 | 4.56948354719121e-223 | 1.53964178639061e-218 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | PRPS2 | 5634 | 9465 | 0.89 | 0.58 | 0.08 | 6.03968121954219e-212 | 2.03501019011255e-207 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | TSPO | 706 | 1158 | 0.88 | 0.75 | 0.15 | 1.41813452113878e-196 | 4.77826245552499e-192 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | S100A14 | 57402 | 18901 | 0.86 | 0.57 | 0.02 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CAPG | 822 | 1474 | 0.86 | 0.71 | 0.09 | 1.71436602794737e-297 | 5.77638489456587e-293 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | COX1 | 4512 | 7419 | 0.86 | 1 | 0.99 | 1.59997298796324e-168 | 5.39094898564336e-164 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | MAL2 | 114569 | 13634 | 0.85 | 0.79 | 0.18 | 2.2072509596441e-178 | 7.43711138342484e-174 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CREM | 1390 | 2352 | 0.85 | 0.68 | 0.23 | 7.0905027895271e-95 | 2.38907400990326e-90 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | SELENOK | 58515 | 30394 | 0.85 | 0.95 | 0.59 | 7.86939558563661e-100 | 2.6515141486244e-95 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | DBI | 1622 | 2690 | 0.84 | 0.92 | 0.45 | 2.18527225124014e-105 | 7.36305632332851e-101 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | S100A4 | 6275 | 10494 | 0.84 | 0.46 | 0.1 | 2.172289040431e-92 | 7.3193106928282e-88 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | ENSG00000262920 | NULL | 0.84 | 0.47 | 0.02 | 0 | 0 | |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | PRKCA | 5578 | 9393 | 0.84 | 0.6 | 0.07 | 1.31973190925219e-257 | 4.44670469503432e-253 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | KLF4 | 9314 | 6348 | 0.83 | 0.76 | 0.22 | 6.26122042599503e-124 | 2.10965561033477e-119 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CLDN7 | 1366 | 2049 | 0.82 | 0.72 | 0.12 | 1.54254777143989e-214 | 5.19746046108955e-210 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CDK2AP2 | 10263 | 30833 | 0.82 | 0.7 | 0.22 | 4.94044217409667e-101 | 1.66463258614013e-96 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | KLF5 | 688 | 6349 | 0.81 | 0.62 | 0.07 | 4.58685940773895e-281 | 1.54549640884356e-276 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | RDH10 | 157506 | 19975 | 0.8 | 0.61 | 0.09 | 1.24079898812582e-204 | 4.18074811059112e-200 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | RALBP1 | 10928 | 9841 | 0.8 | 0.78 | 0.3 | 8.97122685549547e-98 | 3.02276517669064e-93 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | S100P | 6286 | 10504 | 0.8 | 0.16 | 0.001 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CYTOR | 112597 | 28717 | 0.79 | 0.4 | 0.02 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | NEAT1 | 283131 | 30815 | 0.78 | 0.86 | 0.47 | 3.71311757950591e-64 | 1.25109783723872e-59 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | DMKN | 93099 | 25063 | 0.78 | 0.73 | 0.16 | 9.98013652673457e-166 | 3.36270720131795e-161 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | PLP2 | 5355 | 9087 | 0.77 | 0.64 | 0.08 | 1.01035835787837e-252 | 3.40430145103538e-248 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | FOSB | 2354 | 3797 | 0.76 | 0.85 | 0.33 | 3.51518486669321e-94 | 1.18440638898361e-89 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | FAM3B | 54097 | 1253 | 0.76 | 0.5 | 0.01 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | PTP4A2 | 8073 | 9635 | 0.75 | 0.84 | 0.37 | 8.53575437276251e-94 | 2.8760370783586e-89 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | KRT17 | 3872 | 6427 | 0.74 | 0.22 | 0.007 | 1.40042222734067e-304 | 4.71858265280165e-300 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | PERP | 64065 | 17637 | 0.74 | 0.61 | 0.1 | 1.6470383545722e-191 | 5.54953103189556e-187 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | FXYD5 | 53827 | 4029 | 0.74 | 0.52 | 0.03 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | GPR160 | 26996 | 23693 | 0.73 | 0.52 | 0.02 | 0 | 0 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | HSPB1 | 3315 | 5246 | 0.73 | 0.93 | 0.56 | 9.79655871124191e-76 | 3.30085249216585e-71 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | RPL28 | 6158 | 10330 | 0.73 | 0.99 | 0.92 | 9.19280648036736e-112 | 3.09742421549498e-107 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | DNAJB1 | 3337 | 5270 | 0.73 | 0.87 | 0.42 | 1.83971744106715e-73 | 6.19874394593166e-69 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | CSTB | 1476 | 2482 | 0.72 | 0.95 | 0.63 | 1.43621266354956e-82 | 4.8391749485639e-78 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | COX17 | 10063 | 2264 | 0.72 | 0.73 | 0.23 | 1.62686299735466e-105 | 5.48155218328678e-101 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | PIM3 | 415116 | 19310 | 0.71 | 0.6 | 0.15 | 1.15025241151575e-111 | 3.87566047536115e-107 |
70 | 21 | UBCD | Ureteric bud/collecting duct | combined | LRRFIP1 | 9208 | 6702 | 0.7 | 0.8 | 0.3 | 8.3226196318281e-93 | 2.80422345874816e-88 |