Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: combined
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | IGFBP7 | 3490 | 5476 | 1.19 | 0.77 | 0.55 | 2.74132522089298e-120 | 9.2366211992768e-116 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | PAX8 | 7849 | 8622 | 1.03 | 0.82 | 0.36 | 2.69723003195624e-258 | 9.08804686967337e-254 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CCN2 | 1490 | 2500 | 0.96 | 0.84 | 0.64 | 1.2561606846181e-101 | 4.23250781075223e-97 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | PCP4 | 5121 | 8742 | 0.91 | 0.36 | 0.06 | 8.93801524184585e-251 | 3.01157485558754e-246 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | C1QTNF12 | 388581 | 32308 | 0.91 | 0.42 | 0.09 | 9.63802054835174e-231 | 3.24743464356164e-226 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | TPM1 | 7168 | 12010 | 0.87 | 0.85 | 0.59 | 2.04139166504953e-131 | 6.87826507621789e-127 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | LRRTM1 | 347730 | 19408 | 0.79 | 0.42 | 0.09 | 1.08025438784166e-229 | 3.63980913439368e-225 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CDH6 | 1004 | 1765 | 0.77 | 0.49 | 0.16 | 7.5425939386928e-164 | 2.54140160170315e-159 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | KRT19 | 3880 | 6436 | 0.76 | 0.66 | 0.31 | 3.70192267207278e-145 | 1.2473258251282e-140 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | IGFBP4 | 3487 | 5473 | 0.75 | 0.8 | 0.43 | 2.36049893665757e-167 | 7.95346511717403e-163 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | AKAP12 | 9590 | 370 | 0.72 | 0.77 | 0.38 | 7.12687284091884e-158 | 2.40132853501919e-153 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | ADAMTS1 | 9510 | 217 | 0.7 | 0.53 | 0.22 | 1.22006449119333e-124 | 4.11088529662682e-120 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | LYPD1 | 116372 | 28431 | 0.69 | 0.61 | 0.27 | 7.56372660400786e-113 | 2.54852204195441e-108 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | QPRT | 23475 | 9755 | 0.69 | 0.78 | 0.57 | 1.62040292894663e-94 | 5.45978562879276e-90 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CADM1 | 23705 | 5951 | 0.69 | 0.76 | 0.41 | 1.44027521946453e-131 | 4.8528633244638e-127 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | VIM | 7431 | 12692 | 0.68 | 0.89 | 0.84 | 8.80684064641839e-20 | 2.96737688740421e-15 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | DSP | 1832 | 3052 | 0.64 | 0.44 | 0.15 | 2.18416659804528e-127 | 7.35933093545377e-123 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | PMP22 | 5376 | 9118 | 0.63 | 0.38 | 0.14 | 1.61605305267327e-86 | 5.44512915567731e-82 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | SLIT3 | 6586 | 11087 | 0.62 | 0.38 | 0.09 | 5.76078634254218e-180 | 1.94103935025616e-175 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | SH3KBP1 | 30011 | 13867 | 0.58 | 0.38 | 0.12 | 1.22362377876424e-125 | 4.12287796016823e-121 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | TSPAN12 | 23554 | 21641 | 0.58 | 0.61 | 0.34 | 9.88160030441681e-84 | 3.3295064065702e-79 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | DLK1 | 8788 | 2907 | 0.57 | 0.12 | 0.04 | 1.86045018643509e-37 | 6.26860085817439e-33 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | SYTL2 | 54843 | 15585 | 0.57 | 0.23 | 0.07 | 3.33703682818239e-68 | 1.12438118888777e-63 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | LAMP5 | 24141 | 16097 | 0.57 | 0.21 | 0.05 | 3.32167320386029e-87 | 1.11920456930869e-82 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | OLFM3 | 118427 | 17990 | 0.57 | 0.35 | 0.15 | 6.84468345545266e-57 | 2.30624764348022e-52 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | EMID1 | 129080 | 18036 | 0.56 | 0.47 | 0.21 | 9.71359416529539e-91 | 3.27289841805463e-86 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | MAOB | 4129 | 6834 | 0.54 | 0.28 | 0.06 | 3.40590207463502e-148 | 1.14758464502752e-143 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | PLAT | 5327 | 9051 | 0.54 | 0.41 | 0.14 | 1.0791249893871e-115 | 3.6360037392409e-111 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | LHX1 | 3975 | 6593 | 0.54 | 0.44 | 0.23 | 7.44822169092182e-58 | 2.5096038165392e-53 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | MEST | 4232 | 7028 | 0.53 | 0.87 | 0.78 | 1.34722636281593e-50 | 4.53934450687199e-46 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | WDR86 | 349136 | 28020 | 0.51 | 0.31 | 0.09 | 1.37418702822487e-117 | 4.63018577290086e-113 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | KLK6 | 5653 | 6367 | 0.51 | 0.54 | 0.26 | 6.42708170951754e-82 | 2.16554091120484e-77 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | ERP27 | 121506 | 26495 | 0.51 | 0.21 | 0.03 | 2.3511051618532e-156 | 7.92181373234816e-152 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | FBXO17 | 115290 | 18754 | 0.51 | 0.63 | 0.41 | 1.07223020045418e-65 | 3.61277243741032e-61 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | ID1 | 3397 | 5360 | 0.51 | 0.9 | 0.67 | 5.26547914999928e-94 | 1.77415054480076e-89 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | ID3 | 3399 | 5362 | 0.5 | 0.96 | 0.84 | 1.00083937470552e-86 | 3.37222818913279e-82 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | IFITM3 | 10410 | 5414 | 0.49 | 0.76 | 0.68 | 6.28682323774668e-32 | 2.11828222172637e-27 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | COL18A1 | 80781 | 2195 | 0.49 | 0.55 | 0.37 | 5.38613823469458e-47 | 1.81480541679799e-42 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | SULF1 | 23213 | 20391 | 0.48 | 0.29 | 0.09 | 9.63906327763646e-87 | 3.24778598076683e-82 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | BMP7 | 655 | 1074 | 0.47 | 0.49 | 0.25 | 2.32279429371308e-67 | 7.82642309323684e-63 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | APP | 351 | 620 | 0.47 | 0.81 | 0.63 | 7.63403228468097e-71 | 2.57221083800041e-66 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | GLIPR2 | 152007 | 18007 | 0.47 | 0.4 | 0.19 | 9.26729001168989e-64 | 3.12252069653879e-59 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | SERINC5 | 256987 | 18825 | 0.47 | 0.37 | 0.17 | 1.17590848447546e-56 | 3.96210604759162e-52 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | GRB14 | 2888 | 4565 | 0.47 | 0.28 | 0.08 | 4.86177000620564e-95 | 1.63812478589093e-90 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | MGST1 | 4257 | 7061 | 0.46 | 0.38 | 0.19 | 8.18309570922337e-53 | 2.75721226826572e-48 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | KRT8 | 3856 | 6446 | 0.46 | 0.37 | 0.24 | 7.84055427821537e-23 | 2.64179635850189e-18 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CAV2 | 858 | 1528 | 0.46 | 0.22 | 0.05 | 7.18642691796246e-93 | 2.42139468573827e-88 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | BCAM | 4059 | 6722 | 0.46 | 0.72 | 0.47 | 1.69667764138942e-68 | 5.7167856448975e-64 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CYYR1 | 116159 | 16274 | 0.45 | 0.39 | 0.17 | 4.23869805126044e-74 | 1.42818692139169e-69 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | COL13A1 | 1305 | 2190 | 0.45 | 0.29 | 0.13 | 7.92199990938966e-48 | 2.66923864946975e-43 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CCND1 | 595 | 1582 | 0.45 | 0.52 | 0.32 | 2.65578404677084e-36 | 8.94839876718966e-32 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | OSR2 | 116039 | 15830 | 0.45 | 0.31 | 0.15 | 1.15776987016588e-43 | 3.90098980053692e-39 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CCDC198 | 55195 | 20189 | 0.45 | 0.34 | 0.15 | 4.6787581068938e-57 | 1.5764607565368e-52 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | APELA | 100506013 | 48925 | 0.44 | 0.21 | 0.04 | 3.91476169717424e-123 | 1.31903980624589e-118 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | PLOD2 | 5352 | 9082 | 0.44 | 0.62 | 0.38 | 5.07435429470863e-54 | 1.70975293605912e-49 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | BMP4 | 652 | 1071 | 0.44 | 0.4 | 0.2 | 4.00012894709553e-54 | 1.34780344743437e-49 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | LIX1 | 167410 | 18581 | 0.44 | 0.17 | 0.01 | 4.50572742809637e-267 | 1.51815979962279e-262 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | PDGFD | 80310 | 30620 | 0.44 | 0.24 | 0.05 | 1.0779092523062e-129 | 3.63190743472052e-125 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | GRIN2A | 2903 | 4585 | 0.44 | 0.21 | 0.05 | 2.02877223457454e-80 | 6.83574516717547e-76 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | RHOBTB3 | 22836 | 18757 | 0.44 | 0.53 | 0.31 | 5.25496767306314e-58 | 1.77060880776189e-53 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CLDN1 | 9076 | 2032 | 0.43 | 0.26 | 0.07 | 1.75347921273153e-87 | 5.90817285937763e-83 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | DCDC2 | 51473 | 18141 | 0.43 | 0.4 | 0.21 | 5.50303662871929e-46 | 1.85419316168068e-41 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | HSPA2 | 3306 | 5235 | 0.43 | 0.27 | 0.13 | 7.42951316857377e-37 | 2.50330016701925e-32 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | PPA1 | 5464 | 9226 | 0.43 | 0.65 | 0.46 | 1.03000901323306e-50 | 3.47051236918747e-46 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | NRGN | 4900 | 8000 | 0.42 | 0.23 | 0.05 | 4.72461403603518e-114 | 1.59191145330169e-109 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | HES4 | 57801 | 24149 | 0.42 | 0.72 | 0.49 | 1.81357909496732e-55 | 6.1106734025829e-51 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | IGFBP2 | 3485 | 5471 | 0.42 | 0.64 | 0.47 | 1.98422283693101e-33 | 6.68564042675535e-29 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | BEX1 | 55859 | 1036 | 0.42 | 0.51 | 0.31 | 3.35885577793777e-44 | 1.13173286581835e-39 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CRTAC1 | 55118 | 14882 | 0.41 | 0.19 | 0.05 | 5.11461313970077e-60 | 1.72331775129078e-55 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | KIF12 | 113220 | 21495 | 0.41 | 0.36 | 0.17 | 1.75428188265544e-55 | 5.91087737541922e-51 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | KAAG1 | 353219 | 21031 | 0.41 | 0.16 | 0.02 | 2.44449659969571e-132 | 8.23648684301473e-128 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | GPC3 | 2719 | 4451 | 0.41 | 0.94 | 0.77 | 9.46927907051739e-42 | 3.19057889002013e-37 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | ID4 | 3400 | 5363 | 0.4 | 0.71 | 0.55 | 2.14253572198011e-35 | 7.21905986163979e-31 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | KREMEN2 | 79412 | 18797 | 0.4 | 0.21 | 0.05 | 9.71172584955679e-92 | 3.27226890774966e-87 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | ALDH1A1 | 216 | 402 | 0.38 | 0.32 | 0.15 | 8.64483844345959e-46 | 2.91279186513927e-41 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | RGS10 | 6001 | 9992 | 0.38 | 0.39 | 0.19 | 3.68974604306123e-55 | 1.24322303174905e-50 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | ANK3 | 288 | 494 | 0.38 | 0.32 | 0.15 | 2.02524502549523e-44 | 6.82386058890364e-40 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CTTNBP2 | 83992 | 15679 | 0.37 | 0.39 | 0.18 | 1.41968490417285e-55 | 4.78348631612e-51 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | DCXR | 51181 | 18985 | 0.37 | 0.45 | 0.32 | 9.49577185135982e-27 | 3.19950536759718e-22 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CAV1 | 857 | 1527 | 0.37 | 0.16 | 0.02 | 9.06085768511344e-109 | 3.05296538842212e-104 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CREG1 | 8804 | 2351 | 0.36 | 0.47 | 0.29 | 6.72097978119072e-40 | 2.2645669274744e-35 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | PLPP3 | 8613 | 9229 | 0.36 | 0.41 | 0.23 | 4.87249122835161e-37 | 1.64173719448079e-32 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | SLC16A1 | 6566 | 10922 | 0.36 | 0.4 | 0.24 | 6.35805219121857e-33 | 2.14228210530918e-28 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | APEX1 | 328 | 587 | 0.36 | 0.83 | 0.65 | 1.18525507615766e-50 | 3.99359845360562e-46 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CLEC18A | 348174 | 30388 | 0.36 | 0.26 | 0.1 | 7.29253840853132e-54 | 2.45714789137054e-49 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | TTYH1 | 57348 | 13476 | 0.35 | 0.19 | 0.05 | 5.36779753402275e-61 | 1.80862570111363e-56 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | RBP1 | 5947 | 9919 | 0.35 | 0.77 | 0.53 | 2.72013481027183e-45 | 9.16522222972991e-41 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | KRT18 | 3875 | 6430 | 0.35 | 0.51 | 0.34 | 1.08436994776886e-30 | 3.65367610201238e-26 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | ZNF770 | 54989 | 26061 | 0.35 | 0.37 | 0.2 | 2.36771675216188e-39 | 7.97778482473423e-35 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | NTN4 | 59277 | 13658 | 0.34 | 0.16 | 0.06 | 2.47238255246741e-32 | 8.3304457722837e-28 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CCNI | 10983 | 1595 | 0.34 | 0.97 | 0.91 | 1.28568979687707e-79 | 4.33200320159761e-75 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | NRP2 | 8828 | 8005 | 0.34 | 0.34 | 0.16 | 1.66150675925874e-45 | 5.5982808746464e-41 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | WSCD2 | 9671 | 29117 | 0.34 | 0.15 | 0.01 | 2.33171105121756e-194 | 7.85646721597245e-190 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | AJUBA | 84962 | 20250 | 0.33 | 0.37 | 0.21 | 4.70671306971392e-32 | 1.58587990170941e-27 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | EIF3A | 8661 | 3271 | 0.32 | 0.74 | 0.57 | 1.24031107255866e-39 | 4.17910412787916e-35 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | FBLN2 | 2199 | 3601 | 0.32 | 0.19 | 0.08 | 1.80292687760387e-35 | 6.07478182139847e-31 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | RPL5 | 6125 | 10360 | 0.32 | 1 | 0.99 | 1.77909074959395e-119 | 5.99446837168186e-115 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | CTSB | 1508 | 2527 | 0.32 | 0.58 | 0.43 | 4.29203617178463e-29 | 1.44615866772111e-24 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | PAX2 | 5076 | 8616 | 0.32 | 0.52 | 0.34 | 1.80537315805017e-35 | 6.08302431873424e-31 |
70 | 17 | RVCSBb | Renal vesicle/Comma-shaped body b | combined | EPS8L1 | 54869 | 21295 | 0.32 | 0.2 | 0.05 | 1.49928373425585e-71 | 5.05168661420165e-67 |