Marker Genes
Dataset: Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 30789893
- subset name: combined
- total genes: Not reported
- clustering: scran
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
Rows:100
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
70 | 15 | PTA | Pretubular aggregate | combined | HMGB2 | 3148 | 5000 | 1.48 | 0.96 | 0.44 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | UBE2C | 11065 | 15937 | 1.39 | 0.71 | 0.09 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | TUBA1B | 10376 | 18809 | 1.28 | 0.98 | 0.81 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | HIST1H4C | 8364 | 4787 | 1.27 | 0.62 | 0.2 | 1.16756875706891e-254 | 3.93400617006799e-250 |
70 | 15 | PTA | Pretubular aggregate | combined | PTTG1 | 9232 | 9690 | 1.26 | 0.83 | 0.19 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | TOP2A | 7153 | 11989 | 1.25 | 0.71 | 0.08 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CCND1 | 595 | 1582 | 1.21 | 0.81 | 0.3 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CENPF | 1063 | 1857 | 1.18 | 0.71 | 0.08 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | MAD2L1 | 4085 | 6763 | 1.15 | 0.87 | 0.16 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | H2AFZ | 3015 | 4741 | 1.12 | 0.99 | 0.81 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | NUSAP1 | 51203 | 18538 | 1.11 | 0.77 | 0.1 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | BIRC5 | 332 | 593 | 1.08 | 0.73 | 0.08 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CCNB1 | 891 | 1579 | 1.05 | 0.58 | 0.09 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | HMGA1 | 3159 | 5010 | 1.05 | 0.93 | 0.44 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | TYMS | 7298 | 12441 | 1.03 | 0.84 | 0.18 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | PCLAF | 9768 | 28961 | 1.03 | 0.85 | 0.22 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CKS1B | 1163 | 19083 | 1.02 | 0.87 | 0.31 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CCNB2 | 9133 | 1580 | 1.01 | 0.59 | 0.09 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CDK1 | 983 | 1722 | 1.01 | 0.66 | 0.08 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | SMC4 | 10051 | 14013 | 0.95 | 0.82 | 0.21 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | AURKB | 9212 | 11390 | 0.93 | 0.63 | 0.05 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | HMGB1 | 3146 | 4983 | 0.93 | 1 | 0.95 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CDC20 | 991 | 1723 | 0.92 | 0.49 | 0.05 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | TMSB15A | 11013 | 30744 | 0.9 | 0.86 | 0.24 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | UBE2T | 29089 | 25009 | 0.88 | 0.71 | 0.11 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CALCA | 796 | 1437 | 0.87 | 0.48 | 0.05 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | LHX1 | 3975 | 6593 | 0.87 | 0.74 | 0.21 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | PCNA | 5111 | 8729 | 0.87 | 0.81 | 0.29 | 4.65452779283712e-300 | 1.56829659451854e-295 |
70 | 15 | PTA | Pretubular aggregate | combined | PBK | 55872 | 18282 | 0.85 | 0.64 | 0.06 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | MKI67 | 4288 | 7107 | 0.85 | 0.61 | 0.06 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | MCM7 | 4176 | 6950 | 0.85 | 0.83 | 0.27 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CKS2 | 1164 | 2000 | 0.85 | 0.81 | 0.32 | 8.98316322499696e-270 | 3.02678701703047e-265 |
70 | 15 | PTA | Pretubular aggregate | combined | TK1 | 7083 | 11830 | 0.85 | 0.68 | 0.09 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | ZWINT | 11130 | 13195 | 0.83 | 0.73 | 0.14 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | RANBP1 | 5902 | 9847 | 0.81 | 0.96 | 0.65 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | KPNA2 | 3838 | 6395 | 0.8 | 0.7 | 0.3 | 1.59282288420524e-171 | 5.36685742604114e-167 |
70 | 15 | PTA | Pretubular aggregate | combined | RRM2 | 6241 | 10452 | 0.8 | 0.58 | 0.06 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | TUBB | 203068 | 20778 | 0.79 | 0.99 | 0.9 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CCNA2 | 890 | 1578 | 0.78 | 0.56 | 0.05 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | HMGN2 | 3151 | 4986 | 0.76 | 0.99 | 0.9 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | H2AFX | 3014 | 4739 | 0.76 | 0.73 | 0.21 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | TUBB2B | 347733 | 30829 | 0.75 | 0.75 | 0.3 | 4.50539331133798e-218 | 1.51804722232222e-213 |
70 | 15 | PTA | Pretubular aggregate | combined | ANP32E | 81611 | 16673 | 0.75 | 0.81 | 0.27 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | HES4 | 57801 | 24149 | 0.74 | 0.87 | 0.47 | 1.50698069308917e-209 | 5.07762074729464e-205 |
70 | 15 | PTA | Pretubular aggregate | combined | LMNB1 | 4001 | 6637 | 0.74 | 0.71 | 0.16 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | HMGB3 | 3149 | 5004 | 0.74 | 0.82 | 0.3 | 3.82443688090993e-286 | 1.28860576265379e-281 |
70 | 15 | PTA | Pretubular aggregate | combined | PIMREG | 54478 | 25483 | 0.73 | 0.53 | 0.06 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | NUF2 | 83540 | 14621 | 0.73 | 0.54 | 0.04 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | LYPD1 | 116372 | 28431 | 0.73 | 0.68 | 0.26 | 1.06471914098498e-194 | 3.58746467363478e-190 |
70 | 15 | PTA | Pretubular aggregate | combined | PRC1 | 9055 | 9341 | 0.72 | 0.58 | 0.07 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | TUBA1C | 84790 | 20768 | 0.71 | 0.56 | 0.18 | 3.42212682566337e-202 | 1.15305141263901e-197 |
70 | 15 | PTA | Pretubular aggregate | combined | TPX2 | 22974 | 1249 | 0.7 | 0.51 | 0.05 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | PAX8 | 7849 | 8622 | 0.69 | 0.87 | 0.35 | 1.39750755704611e-261 | 4.70876196271116e-257 |
70 | 15 | PTA | Pretubular aggregate | combined | RAN | 5901 | 9846 | 0.69 | 0.98 | 0.81 | 8.1590996145464e-305 | 2.74912702412526e-300 |
70 | 15 | PTA | Pretubular aggregate | combined | UBE2S | 27338 | 17895 | 0.68 | 0.7 | 0.28 | 9.41036822538781e-194 | 3.17072946986217e-189 |
70 | 15 | PTA | Pretubular aggregate | combined | DTYMK | 1841 | 3061 | 0.68 | 0.75 | 0.24 | 1.57667257530212e-301 | 5.31244057522296e-297 |
70 | 15 | PTA | Pretubular aggregate | combined | H2AFY | 9555 | 4740 | 0.68 | 0.93 | 0.54 | 5.16561992568494e-246 | 1.74050397776028e-241 |
70 | 15 | PTA | Pretubular aggregate | combined | CENPV | 201161 | 29920 | 0.68 | 0.8 | 0.32 | 2.30125401068341e-241 | 7.75384526359668e-237 |
70 | 15 | PTA | Pretubular aggregate | combined | CADM1 | 23705 | 5951 | 0.68 | 0.88 | 0.4 | 1.8138733398439e-217 | 6.11166483127003e-213 |
70 | 15 | PTA | Pretubular aggregate | combined | GGH | 8836 | 4248 | 0.68 | 0.75 | 0.21 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | FEN1 | 2237 | 3650 | 0.67 | 0.6 | 0.12 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | DEK | 7913 | 2768 | 0.67 | 0.94 | 0.55 | 8.60948481584231e-243 | 2.90087981384991e-238 |
70 | 15 | PTA | Pretubular aggregate | combined | ARL6IP1 | 23204 | 697 | 0.66 | 0.83 | 0.6 | 7.49700893809309e-63 | 2.52604219160108e-58 |
70 | 15 | PTA | Pretubular aggregate | combined | CENPM | 79019 | 18352 | 0.66 | 0.58 | 0.07 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | STMN1 | 3925 | 6510 | 0.66 | 0.99 | 0.94 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | PLK1 | 5347 | 9077 | 0.66 | 0.34 | 0.03 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | HEY1 | 23462 | 4880 | 0.64 | 0.66 | 0.23 | 7.89940799319921e-204 | 2.66162652922854e-199 |
70 | 15 | PTA | Pretubular aggregate | combined | CDKN3 | 1033 | 1791 | 0.64 | 0.49 | 0.05 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | JAG1 | 182 | 6188 | 0.63 | 0.69 | 0.23 | 1.58708260494324e-238 | 5.34751612909574e-234 |
70 | 15 | PTA | Pretubular aggregate | combined | SFRP2 | 6423 | 10777 | 0.62 | 0.37 | 0.05 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | KRT18 | 3875 | 6430 | 0.62 | 0.77 | 0.32 | 3.14448086182007e-200 | 1.05950138158165e-195 |
70 | 15 | PTA | Pretubular aggregate | combined | PHGDH | 26227 | 8923 | 0.62 | 0.83 | 0.35 | 1.49224619831081e-225 | 5.02797434058845e-221 |
70 | 15 | PTA | Pretubular aggregate | combined | GTSE1 | 51512 | 13698 | 0.61 | 0.48 | 0.05 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CENPU | 79682 | 21348 | 0.61 | 0.59 | 0.09 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | DHFR | 1719 | 2861 | 0.61 | 0.59 | 0.14 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | KIF22 | 3835 | 6391 | 0.61 | 0.63 | 0.15 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CENPA | 1058 | 1851 | 0.61 | 0.35 | 0.03 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | TMPO | 7112 | 11875 | 0.6 | 0.73 | 0.24 | 1.74280461966794e-263 | 5.87220588550915e-259 |
70 | 15 | PTA | Pretubular aggregate | combined | DUT | 1854 | 3078 | 0.6 | 0.86 | 0.55 | 8.81263560586036e-125 | 2.96932944103859e-120 |
70 | 15 | PTA | Pretubular aggregate | combined | HMMR | 3161 | 5012 | 0.6 | 0.37 | 0.03 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | SMC2 | 10592 | 14011 | 0.59 | 0.68 | 0.18 | 8.32766473708642e-306 | 2.8059233565139e-301 |
70 | 15 | PTA | Pretubular aggregate | combined | JPT1 | 51155 | 14569 | 0.59 | 0.82 | 0.39 | 3.70390754711099e-175 | 1.24799460892358e-170 |
70 | 15 | PTA | Pretubular aggregate | combined | GINS2 | 51659 | 24575 | 0.59 | 0.59 | 0.15 | 4.60020486024029e-279 | 1.54999302560936e-274 |
70 | 15 | PTA | Pretubular aggregate | combined | TACC3 | 10460 | 11524 | 0.58 | 0.49 | 0.06 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | NASP | 4678 | 7644 | 0.58 | 0.89 | 0.49 | 4.34896767661008e-176 | 1.465341168957e-171 |
70 | 15 | PTA | Pretubular aggregate | combined | NUCKS1 | 64710 | 29923 | 0.58 | 0.97 | 0.79 | 2.40697219291975e-199 | 8.11005210682381e-195 |
70 | 15 | PTA | Pretubular aggregate | combined | LSM4 | 25804 | 17259 | 0.58 | 0.88 | 0.47 | 7.38189511394267e-195 | 2.48725573969184e-190 |
70 | 15 | PTA | Pretubular aggregate | combined | SGO1 | 151648 | 25088 | 0.58 | 0.5 | 0.05 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CXCR4 | 7852 | 2561 | 0.58 | 0.5 | 0.12 | 5.31285544499351e-240 | 1.79011351363611e-235 |
70 | 15 | PTA | Pretubular aggregate | combined | ASF1B | 55723 | 20996 | 0.58 | 0.47 | 0.05 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | TUBB4B | 10383 | 20771 | 0.58 | 0.91 | 0.62 | 1.18623607502242e-124 | 3.99690383118054e-120 |
70 | 15 | PTA | Pretubular aggregate | combined | BUB3 | 9184 | 1151 | 0.58 | 0.75 | 0.31 | 7.74945042934525e-188 | 2.61109982766359e-183 |
70 | 15 | PTA | Pretubular aggregate | combined | PKM | 5315 | 9021 | 0.57 | 0.96 | 0.71 | 5.63048719499643e-177 | 1.8971363554821e-172 |
70 | 15 | PTA | Pretubular aggregate | combined | RNASEH2A | 10535 | 18518 | 0.57 | 0.6 | 0.14 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | KIF20B | 9585 | 7212 | 0.57 | 0.56 | 0.1 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | MCM3 | 4172 | 6945 | 0.57 | 0.66 | 0.25 | 1.37154039247722e-181 | 4.62126819841275e-177 |
70 | 15 | PTA | Pretubular aggregate | combined | PSRC1 | 84722 | 24472 | 0.57 | 0.38 | 0.05 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | SNRPB | 6628 | 11153 | 0.56 | 0.96 | 0.64 | 1.50202098441428e-204 | 5.06090950488549e-200 |
70 | 15 | PTA | Pretubular aggregate | combined | SPC25 | 57405 | 24031 | 0.56 | 0.45 | 0.04 | 0 | 0 |
70 | 15 | PTA | Pretubular aggregate | combined | CDCA3 | 83461 | 14624 | 0.56 | 0.39 | 0.03 | 0 | 0 |