Marker Genes
Dataset: Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease
- tissue: Kidney
- ontology: Kidney
- genotype: C57BL/6
- stage:
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 29622724
- subset name: all
- total genes: 16383
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107585
Rows:17
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68 | 9 | novel cell type 1 | all | Lockd | 381822 | 1915081 | 2.36 | 90.7 | 2.8 | 0 | 0 | |
| 68 | 9 | novel cell type 1 | all | Mki67 | 17345 | 106035 | 1.77 | 69.2 | 1.1 | 0 | 0 | |
| 68 | 9 | novel cell type 1 | all | Cdca3 | 14793 | 1315198 | 1.44 | 67.4 | 0.5 | 0 | 0 | |
| 68 | 9 | novel cell type 1 | all | Ccdc34 | 68201 | 1915451 | 1.3 | 67.1 | 6.7 | 0 | 0 | |
| 68 | 9 | novel cell type 1 | all | Spc25 | 66442 | 1913692 | 1.26 | 63.6 | 8.4 | 2.36e-291 | 1.37e-288 | |
| 68 | 9 | novel cell type 1 | all | Cox6b2 | 333182 | 3044182 | 1.11 | 56.7 | 7.4 | 1.27e-226 | 4.71e-224 | |
| 68 | 9 | novel cell type 1 | all | Pbk | 52033 | 1289156 | 1.01 | 43.4 | 0.2 | 0 | 0 | |
| 68 | 9 | novel cell type 1 | all | Hjurp | 381280 | 2685821 | 0.91 | 35.9 | 3.3 | 1.07e-165 | 2.55e-163 | |
| 68 | 9 | novel cell type 1 | all | Cdkn2c | 12580 | 105388 | 0.87 | 43.1 | 4.5 | 1.64e-170 | 3.98e-168 | |
| 68 | 9 | novel cell type 1 | all | Serpinb8 | 20725 | 894657 | 0.75 | 30 | 1.6 | 7.59e-160 | 1.69e-157 | |
| 68 | 9 | novel cell type 1 | all | G2e3 | 217558 | 2444298 | 0.69 | 29.3 | 2.4 | 7.69e-129 | 1.42e-126 | |
| 68 | 9 | novel cell type 1 | all | Dtymk | 21915 | 108396 | 0.6 | 42.1 | 9.2 | 3.31e-98 | 4.6e-96 | |
| 68 | 9 | novel cell type 1 | all | Thoc7 | 66231 | 1913481 | 0.59 | 66.4 | 27.7 | 1.01e-82 | 1.21e-80 | |
| 68 | 9 | novel cell type 1 | all | Aadac | 67758 | 1915008 | 0.58 | 38.6 | 8.8 | 3.52e-84 | 4.38e-82 | |
| 68 | 9 | novel cell type 1 | all | Arhgef39 | 230098 | 3036286 | 0.56 | 25.6 | 2.6 | 2.43e-98 | 3.44e-96 | |
| 68 | 9 | novel cell type 1 | all | Fuom | 69064 | 1916314 | 0.53 | 48.8 | 17.9 | 1.71e-63 | 1.69e-61 | |
| 68 | 9 | novel cell type 1 | all | Kmt5a | 67956 | 1915206 | 0.52 | 49.4 | 17.2 | 3.68e-70 | 3.86e-68 |