Marker Genes
Dataset: Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease
- tissue: Kidney
- ontology: Kidney
- genotype: C57BL/6
- stage:
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 29622724
- subset name: all
- total genes: 16383
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107585
Rows:32
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68 | 8 | CD-Trans | all | Slc26a4 | 23985 | 1346029 | 2.18 | 79.1 | 2.7 | 1.35E-113 | 3.14E-110 | |
| 68 | 8 | CD-Trans | all | Car12 | 76459 | 1923709 | 1.86 | 94.5 | 25.7 | 1.72E-99 | 2.15E-96 | |
| 68 | 8 | CD-Trans | all | Rhbg | 58176 | 1927379 | 1.76 | 83.6 | 5.7 | 6.6E-94 | 6.72E-91 | |
| 68 | 8 | CD-Trans | all | Hepacam2 | 101202 | 2141520 | 1.57 | 77.3 | 2.7 | 5.92E-107 | 1.07E-103 | |
| 68 | 8 | CD-Trans | all | Insrr | 23920 | 1346037 | 1.52 | 69.1 | 1.9 | 5.25E-100 | 7.11E-97 | |
| 68 | 8 | CD-Trans | all | Clcnkb | 56365 | 1930643 | 1.43 | 94.5 | 18.4 | 9.61E-72 | 4.23E-69 | |
| 68 | 8 | CD-Trans | all | Col18a1 | 12822 | 88451 | 1.31 | 81.8 | 9.4 | 1.79E-72 | 8.55E-70 | |
| 68 | 8 | CD-Trans | all | Slc43a2 | 215113 | 2442746 | 1.28 | 89.1 | 21.1 | 2.89E-60 | 8.56E-58 | |
| 68 | 8 | CD-Trans | all | Tmem117 | 320709 | 2444580 | 1.21 | 65.5 | 2.9 | 1.12E-79 | 6.75E-77 | |
| 68 | 8 | CD-Trans | all | Sox4 | 20677 | 98366 | 0.96 | 60 | 5.7 | 5.85E-51 | 1.03E-48 | |
| 68 | 8 | CD-Trans | all | Laptm4b | 114128 | 1890494 | 0.92 | 60 | 6.8 | 5.33E-46 | 7.68E-44 | |
| 68 | 8 | CD-Trans | all | Parm1 | 231440 | 2443349 | 0.9 | 51.8 | 1.5 | 1.0E-69 | 3.87E-67 | |
| 68 | 8 | CD-Trans | all | St14 | 19143 | 1338881 | 0.89 | 64.5 | 6.5 | 2.41E-55 | 5.61E-53 | |
| 68 | 8 | CD-Trans | all | Enpp5 | 83965 | 1933830 | 0.89 | 70.9 | 10.3 | 8.01E-50 | 1.32E-47 | |
| 68 | 8 | CD-Trans | all | Gclc | 14629 | 104990 | 0.88 | 77.3 | 19.2 | 2.6E-37 | 2.43E-35 | |
| 68 | 8 | CD-Trans | all | Rpn1 | 103963 | 98084 | 0.86 | 80 | 19 | 2.91E-41 | 3.35E-39 | |
| 68 | 8 | CD-Trans | all | Syt7 | 54525 | 1859545 | 0.81 | 38.2 | 1 | 2.99E-52 | 5.94E-50 | |
| 68 | 8 | CD-Trans | all | Itgav | 16410 | 96608 | 0.79 | 65.5 | 16 | 2.79E-29 | 1.59E-27 | |
| 68 | 8 | CD-Trans | all | Tmem50b | 77975 | 1925225 | 0.73 | 50.9 | 5.5 | 1.23E-39 | 1.34E-37 | |
| 68 | 8 | CD-Trans | all | Atp5a1 | 11946 | 88115 | 0.73 | 99.1 | 75.7 | 3.49E-37 | 3.25E-35 | |
| 68 | 8 | CD-Trans | all | Ddx6 | 13209 | 104976 | 0.73 | 64.5 | 16.6 | 3.05E-27 | 1.48E-25 | |
| 68 | 8 | CD-Trans | all | Ctnnb1 | 12387 | 88276 | 0.7 | 74.5 | 23.9 | 2.45E-27 | 1.21E-25 | |
| 68 | 8 | CD-Trans | all | Aco2 | 11429 | 87880 | 0.7 | 91.8 | 48.6 | 3.03E-24 | 1.23E-22 | |
| 68 | 8 | CD-Trans | all | Smpd1 | 20597 | 98325 | 0.69 | 57.3 | 9.7 | 6.46E-35 | 5.18E-33 | |
| 68 | 8 | CD-Trans | all | Ogdh | 18293 | 1098267 | 0.69 | 85.5 | 39.5 | 5.43E-23 | 1.94E-21 | |
| 68 | 8 | CD-Trans | all | Sec23b | 27054 | 1350925 | 0.65 | 50.9 | 8.4 | 1.85E-30 | 1.13E-28 | |
| 68 | 8 | CD-Trans | all | Cdc42bpb | 217866 | 2136459 | 0.6 | 41.8 | 6.7 | 4.16E-24 | 1.68E-22 | |
| 68 | 8 | CD-Trans | all | Pip4k2c | 117150 | 2152214 | 0.59 | 54.5 | 13.2 | 1.86E-24 | 7.64E-23 | |
| 68 | 8 | CD-Trans | all | Cttn | 13043 | 99695 | 0.58 | 45.5 | 10.7 | 3.93E-19 | 1.0E-17 | |
| 68 | 8 | CD-Trans | all | Chd4 | 107932 | 1344380 | 0.56 | 65.5 | 22.2 | 6.64E-21 | 1.97E-19 | |
| 68 | 8 | CD-Trans | all | Mprip | 26936 | 1349438 | 0.56 | 58.2 | 13.8 | 5.91E-29 | 3.27E-27 | |
| 68 | 8 | CD-Trans | all | Sdha | 66945 | 1914195 | 0.52 | 87.3 | 43.9 | 1.81E-19 | 4.73E-18 |