Marker Genes
Dataset: Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease
- tissue: Kidney
- ontology: Kidney
- genotype: C57BL/6
- stage:
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 29622724
- subset name: all
- total genes: 16383
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107585
Rows:33
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
68 | 4 | LOH | all | Slc12a1 | 20495 | 103150 | 3.57 | 94.6 | 2.6 | 0 | 0 | |
68 | 4 | LOH | all | Umod | 22242 | 102674 | 2.7 | 89.9 | 23.2 | 0 | 0 | |
68 | 4 | LOH | all | Egf | 13645 | 95290 | 2.15 | 85.2 | 24 | 0 | 0 | |
68 | 4 | LOH | all | Wfdc15b | 192201 | 2445041 | 1.93 | 87.3 | 29.5 | 0 | 0 | |
68 | 4 | LOH | all | Mt2 | 17750 | 97172 | 1.84 | 75.1 | 18.5 | 0 | 0 | |
68 | 4 | LOH | all | Ppp1r1a | 58200 | 1889595 | 1.8 | 94.4 | 24.2 | 0 | 0 | |
68 | 4 | LOH | all | Mt1 | 17748 | 97171 | 1.78 | 98.3 | 58.5 | 0 | 0 | |
68 | 4 | LOH | all | Sostdc1 | 66042 | 1913292 | 1.76 | 76.2 | 14.8 | 0 | 0 | |
68 | 4 | LOH | all | Slc5a3 | 53881 | 1858226 | 1.4 | 52.6 | 10 | 0 | 0 | |
68 | 4 | LOH | all | Ly6a | 110454 | 107527 | 1.39 | 92.3 | 51.5 | 0 | 0 | |
68 | 4 | LOH | all | Mrps6 | 121022 | 2153111 | 1.25 | 58.3 | 16.5 | 0 | 0 | |
68 | 4 | LOH | all | Ckb | 12709 | 88407 | 1.15 | 50.8 | 13.4 | 9.83e-299 | 5.92e-296 | |
68 | 4 | LOH | all | Ppp1r1b | 19049 | 94860 | 1.09 | 33.6 | 1.3 | 0 | 0 | |
68 | 4 | LOH | all | Cldn10 | 58187 | 1913101 | 1.08 | 45 | 26.8 | 0 | 0 | |
68 | 4 | LOH | all | Cldn19 | 242653 | 3033992 | 0.96 | 30.1 | 0.5 | 0 | 0 | |
68 | 4 | LOH | all | Ptger3 | 19218 | 97795 | 0.94 | 27.6 | 1.6 | 0 | 0 | |
68 | 4 | LOH | all | Gadd45g | 23882 | 1346325 | 0.89 | 44.4 | 17.2 | 1.11e-196 | 3.83e-194 | |
68 | 4 | LOH | all | Fabp3 | 14077 | 95476 | 0.85 | 47.8 | 19.2 | 7.64e-182 | 2.35e-179 | |
68 | 4 | LOH | all | Cldn16 | 114141 | 2148742 | 0.84 | 21.8 | 0.1 | 0 | 0 | |
68 | 4 | LOH | all | Slc5a1 | 20537 | 107678 | 0.75 | 27.8 | 4.6 | 3.51e-224 | 1.43e-221 | |
68 | 4 | LOH | all | Irx1 | 16371 | 1197515 | 0.74 | 18.2 | 0.2 | 0 | 0 | |
68 | 4 | LOH | all | Tmem207 | 100043057 | 2685386 | 0.73 | 16.8 | 0.1 | 0 | 0 | |
68 | 4 | LOH | all | Baiap2l2 | 207495 | 2652819 | 0.73 | 35.7 | 11.5 | 5.66e-177 | 1.65e-174 | |
68 | 4 | LOH | all | Shd | 20420 | 1099461 | 0.7 | 21.1 | 0.6 | 0 | 0 | |
68 | 4 | LOH | all | Nccrp1 | 233038 | 2685009 | 0.7 | 15.1 | 0.2 | 1.66e-279 | 9.03e-277 | |
68 | 4 | LOH | all | Cyfip2 | 76884 | 1924134 | 0.69 | 40 | 16.4 | 1.34e-153 | 3.36e-151 | |
68 | 4 | LOH | all | Clcnka | 12733 | 1329026 | 0.67 | 22.8 | 4 | 2.92e-178 | 8.65e-176 | |
68 | 4 | LOH | all | Gcgr | 14527 | 99572 | 0.63 | 24.5 | 4.5 | 1.13e-170 | 3.1e-168 | |
68 | 4 | LOH | all | Cgnl1 | 68178 | 1915428 | 0.63 | 37.1 | 18.1 | 2.04e-120 | 4.06e-118 | |
68 | 4 | LOH | all | Me3 | 109264 | 1916679 | 0.62 | 26.7 | 6.6 | 6.21e-144 | 1.46e-141 | |
68 | 4 | LOH | all | Irx2 | 16372 | 1197526 | 0.59 | 14.9 | 0.2 | 3.98e-279 | 2.09e-276 | |
68 | 4 | LOH | all | Aktip | 14339 | 3693832 | 0.59 | 34.4 | 15.9 | 1.11e-109 | 1.88e-107 | |
68 | 4 | LOH | all | Fgf9 | 14180 | 104723 | 0.55 | 20.7 | 4.2 | 8.01e-135 | 1.81e-132 |