Marker Genes
Dataset: Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease
- tissue: Kidney
- ontology: Kidney
- genotype: C57BL/6
- stage:
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 29622724
- subset name: all
- total genes: 16383
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107585
Rows:77
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
68 | 10 | Fib | all | Lyz2 | 17105 | 96897 | 4.78 | 87.2 | 1.2 | 0 | 0 | |
68 | 10 | Fib | all | Plac8 | 231507 | 2445289 | 3.73 | 93.3 | 6.3 | 0 | 0 | |
68 | 10 | Fib | all | Ifitm3 | 66141 | 1913391 | 3.35 | 87.2 | 3.4 | 0 | 0 | |
68 | 10 | Fib | all | Ifi27l2a | 76933 | 1924183 | 2.84 | 75.4 | 2.8 | 0 | 0 | |
68 | 10 | Fib | all | Lst1 | 16988 | 1096324 | 2.55 | 76.3 | 0.6 | 0 | 0 | |
68 | 10 | Fib | all | Gngt2 | 14710 | 893584 | 2.39 | 69.2 | 1.2 | 0 | 0 | |
68 | 10 | Fib | all | Ms4a6c | 73656 | 2385644 | 2.33 | 74 | 0.7 | 0 | 0 | |
68 | 10 | Fib | all | S100a4 | 20198 | 1330282 | 2.28 | 69.2 | 1.1 | 0 | 0 | |
68 | 10 | Fib | all | Lgals3 | 16854 | 96778 | 2.26 | 80.5 | 8.5 | 0 | 0 | |
68 | 10 | Fib | all | Clec4a3 | 73149 | 1920399 | 1.6 | 52.1 | 0.2 | 0 | 0 | |
68 | 10 | Fib | all | Ucp2 | 22228 | 109354 | 1.58 | 74.9 | 12.4 | 4.94065645841247e-324 | 9.93071948140906e-322 | |
68 | 10 | Fib | all | Samhd1 | 56045 | 1927468 | 1.53 | 61.9 | 3.3 | 0 | 0 | |
68 | 10 | Fib | all | Psap | 19156 | 97783 | 1.51 | 93.1 | 59 | 0 | 0 | |
68 | 10 | Fib | all | Mpeg1 | 17476 | 1333743 | 1.47 | 54.1 | 0.2 | 0 | 0 | |
68 | 10 | Fib | all | Ccr2 | 12772 | 106185 | 1.45 | 47.2 | 0.9 | 0 | 0 | |
68 | 10 | Fib | all | Fam49b | 223601 | 1923520 | 1.42 | 55.6 | 3.8 | 1.53e-300 | 2.76e-298 | |
68 | 10 | Fib | all | Clec4a1 | 269799 | 3036291 | 1.38 | 45 | 0.2 | 0 | 0 | |
68 | 10 | Fib | all | Ms4a4c | 64380 | 1927656 | 1.38 | 41 | 0.2 | 0 | 0 | |
68 | 10 | Fib | all | Itgal | 16408 | 96606 | 1.34 | 40.3 | 1 | 7.2e-270 | 1.13e-267 | |
68 | 10 | Fib | all | Tgfbi | 21810 | 99959 | 1.33 | 42.3 | 0.3 | 0 | 0 | |
68 | 10 | Fib | all | Chil3 | 12655 | 1330860 | 1.32 | 18.4 | 0 | 2.59e-183 | 2.02e-181 | |
68 | 10 | Fib | all | Tppp3 | 67971 | 1915221 | 1.31 | 33 | 0.3 | 4.9e-286 | 8.31e-284 | |
68 | 10 | Fib | all | Msn | 17698 | 97167 | 1.28 | 65.8 | 12.6 | 2.2e-219 | 2.29e-217 | |
68 | 10 | Fib | all | Tgfb1 | 21803 | 98725 | 1.24 | 45.7 | 1.7 | 5.2e-269 | 7.98e-267 | |
68 | 10 | Fib | all | Plbd1 | 66857 | 1914107 | 1.22 | 40.8 | 0.5 | 4.94065645841247e-324 | 9.93071948140906e-322 | |
68 | 10 | Fib | all | Flna | 192176 | 95556 | 1.21 | 43.2 | 1.8 | 2.18e-247 | 2.98e-245 | |
68 | 10 | Fib | all | Cd300a | 217303 | 2443411 | 1.21 | 42.3 | 0.2 | 0 | 0 | |
68 | 10 | Fib | all | Rap1a | 109905 | 97852 | 1.19 | 63.2 | 16.2 | 8.68e-191 | 7.28e-189 | |
68 | 10 | Fib | all | Cytip | 227929 | 2183535 | 1.17 | 49.9 | 5.6 | 9.7e-202 | 8.77e-200 | |
68 | 10 | Fib | all | Ear2 | 13587 | 108020 | 1.17 | 25.3 | 0 | 1.27e-266 | 1.88e-264 | |
68 | 10 | Fib | all | Lyn | 17096 | 96892 | 1.14 | 43.5 | 1.8 | 2.52e-250 | 3.53e-248 | |
68 | 10 | Fib | all | Fgr | 14191 | 95527 | 1.13 | 38.6 | 0.2 | 0 | 0 | |
68 | 10 | Fib | all | Hck | 15162 | 96052 | 1.13 | 38.1 | 0.1 | 0 | 0 | |
68 | 10 | Fib | all | Ptpn6 | 15170 | 96055 | 1.12 | 43.5 | 3 | 7.61e-207 | 7.12e-205 | |
68 | 10 | Fib | all | Tmcc1 | 330401 | 2442368 | 1.06 | 39.9 | 6.3 | 2.04e-146 | 1.18e-144 | |
68 | 10 | Fib | all | Fn1 | 14268 | 95566 | 1.05 | 23.5 | 0.1 | 5.36e-214 | 5.42e-212 | |
68 | 10 | Fib | all | Gm2a | 14667 | 95762 | 1.04 | 71.9 | 30.2 | 2.8e-147 | 1.63e-145 | |
68 | 10 | Fib | all | Ace | 11421 | 87874 | 1.02 | 27.5 | 3.1 | 1.47e-126 | 7.43e-125 | |
68 | 10 | Fib | all | Adgre4 | 52614 | 1196464 | 1.02 | 26.2 | 0 | 1.17e-272 | 1.89e-270 | |
68 | 10 | Fib | all | Ptpn1 | 19246 | 97805 | 1.02 | 47.5 | 7.3 | 5.32e-157 | 3.43e-155 | |
68 | 10 | Fib | all | Ifi30 | 65972 | 2137648 | 1.01 | 44.8 | 8 | 5.3e-138 | 2.91e-136 | |
68 | 10 | Fib | all | Sirpb1c | 100038947 | 3807521 | 1 | 30.2 | 0 | 3.32e-305 | 6.14e-303 | |
68 | 10 | Fib | all | Clec12a | 232413 | 3040968 | 0.99 | 34.4 | 0.1 | 0 | 0 | |
68 | 10 | Fib | all | Irf7 | 54123 | 1859212 | 0.96 | 30.4 | 0.9 | 1.09e-180 | 8.22e-179 | |
68 | 10 | Fib | all | Ap1s2 | 108012 | 1889383 | 0.94 | 32.2 | 1.2 | 2.07e-183 | 1.63e-181 | |
68 | 10 | Fib | all | Filip1l | 78749 | 1925999 | 0.94 | 30.2 | 0.8 | 2.09e-193 | 1.81e-191 | |
68 | 10 | Fib | all | Sat1 | 20229 | 98233 | 0.93 | 77.8 | 48.6 | 2.36e-125 | 1.19e-123 | |
68 | 10 | Fib | all | Nr4a1 | 15370 | 1352454 | 0.92 | 26.2 | 0.6 | 3.07e-174 | 2.19e-172 | |
68 | 10 | Fib | all | Tnfrsf1b | 21938 | 1314883 | 0.91 | 28.4 | 0.2 | 8.2e-234 | 9.81e-232 | |
68 | 10 | Fib | all | Pitpna | 18738 | 99887 | 0.91 | 50.5 | 13.2 | 4.04e-110 | 1.74e-108 | |
68 | 10 | Fib | all | Prkcd | 18753 | 97598 | 0.9 | 38.4 | 8.2 | 4.23e-107 | 1.79e-105 | |
68 | 10 | Fib | all | Eno3 | 13808 | 95395 | 0.89 | 18 | 1 | 7.7e-117 | 3.58e-115 | |
68 | 10 | Fib | all | Napsa | 16541 | 109365 | 0.87 | 68.7 | 23 | 1.28e-111 | 5.58e-110 | |
68 | 10 | Fib | all | Psma7 | 26444 | 1347070 | 0.86 | 67.6 | 33.9 | 3.55e-100 | 1.41e-98 | |
68 | 10 | Fib | all | Cd209a | 170786 | 2157942 | 0.83 | 11.5 | 0 | 7.93e-119 | 3.74e-117 | |
68 | 10 | Fib | all | Abi3 | 66610 | 1913860 | 0.83 | 25.1 | 0.6 | 1.84e-158 | 1.2e-156 | |
68 | 10 | Fib | all | Treml4 | 224840 | 1923239 | 0.81 | 18.2 | 0 | 4.9e-187 | 4.03e-185 | |
68 | 10 | Fib | all | Lrp1 | 16971 | 96828 | 0.8 | 24.6 | 0.1 | 1.12e-210 | 1.11e-208 | |
68 | 10 | Fib | all | Ms4a6d | 68774 | 1916024 | 0.79 | 21.9 | 0.1 | 6.73e-189 | 5.61e-187 | |
68 | 10 | Fib | all | F13a1 | 74145 | 1921395 | 0.78 | 20.6 | 0 | 1.83e-208 | 1.76e-206 | |
68 | 10 | Fib | all | Arl5c | 217151 | 3028577 | 0.77 | 23.1 | 0.3 | 1.33e-178 | 9.89e-177 | |
68 | 10 | Fib | all | Ly6i | 57248 | 1888480 | 0.77 | 16.2 | 0.1 | 2.34e-148 | 1.37e-146 | |
68 | 10 | Fib | all | Hfe | 15216 | 109191 | 0.73 | 23.3 | 2 | 3.7e-97 | 1.44e-95 | |
68 | 10 | Fib | all | Stk10 | 20868 | 1099439 | 0.72 | 22.2 | 0.5 | 1.3e-140 | 7.24e-139 | |
68 | 10 | Fib | all | Gpr141 | 353346 | 2672983 | 0.71 | 23.3 | 0 | 5.15e-239 | 6.44e-237 | |
68 | 10 | Fib | all | Pip4k2a | 18718 | 1298206 | 0.67 | 25 | 0.5 | 2.91e-164 | 1.99e-162 | |
68 | 10 | Fib | all | Naaa | 67111 | 1914361 | 0.67 | 20.9 | 1.1 | 1.92e-104 | 7.91e-103 | |
68 | 10 | Fib | all | Fam49a | 76820 | 1261783 | 0.67 | 20.6 | 0.3 | 2.95e-145 | 1.69e-143 | |
68 | 10 | Fib | all | Ccdc88a | 108686 | 1925177 | 0.66 | 25.5 | 2.2 | 1.04e-99 | 4.08e-98 | |
68 | 10 | Fib | all | Nadk | 192185 | 2183149 | 0.65 | 42.8 | 16.4 | 2.46e-54 | 6.43e-53 | |
68 | 10 | Fib | all | Tkt | 21881 | 105992 | 0.62 | 52.6 | 24.9 | 4.07e-49 | 1.01e-47 | |
68 | 10 | Fib | all | Mob1a | 232157 | 2442631 | 0.58 | 29 | 7.2 | 3e-53 | 7.78e-52 | |
68 | 10 | Fib | all | Mcub | 66815 | 1914065 | 0.57 | 17.7 | 0.1 | 1.43e-151 | 8.65e-150 | |
68 | 10 | Fib | all | Clec10a | 17312 | 96975 | 0.57 | 14.2 | 0 | 2.16e-135 | 1.16e-133 | |
68 | 10 | Fib | all | Cd300e | 217306 | 2387602 | 0.54 | 11.7 | 0 | 2.19e-119 | 1.04e-117 | |
68 | 10 | Fib | all | Serpinb10 | 241197 | 2138648 | 0.53 | 13.8 | 0 | 9.19e-143 | 5.16e-141 | |
68 | 10 | Fib | all | G6pdx | 14381 | 105979 | 0.53 | 19.3 | 2.8 | 1.14e-55 | 3e-54 |