Marker Genes
Dataset: Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq
- tissue: Habenula
- ontology: Brain
- genotype: Tg(gng8-nfsB-CAAX-GFP)
- stage:
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 29576475
- subset name: all
- total genes: Not reported
- clustering: Seurat
- pseudotime: Not reported
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE105115
Rows:10
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53 | 21 | Ad_Hb08 | all | cckb | 100000095 | ZDB-GENE-060720-30 | 1.36E-126 | |||||
| 53 | 21 | Ad_Hb08 | all | lmo1 | 280646 | ZDB-GENE-021115-6 | 3.53E-123 | |||||
| 53 | 21 | Ad_Hb08 | all | wnt7aa | 565714 | ZDB-GENE-051129-1 | 8.35E-105 | |||||
| 53 | 21 | Ad_Hb08 | all | nwd2 | 562320 | NULL | 6.21E-97 | |||||
| 53 | 21 | Ad_Hb08 | all | ngb | 100000711 | ZDB-GENE-011102-1 | 1.98E-96 | |||||
| 53 | 21 | Ad_Hb08 | all | pcp4a | 386848 | ZDB-GENE-031118-105 | 1.8E-93 | |||||
| 53 | 21 | Ad_Hb08 | all | nrp1a | 353246 | ZDB-GENE-030519-2 | 2.29E-91 | |||||
| 53 | 21 | Ad_Hb08 | all | tp53i11b | 556618 | ZDB-GENE-030131-6328 | 7.52E-85 | |||||
| 53 | 21 | Ad_Hb08 | all | lmo4b | 324849 | ZDB-GENE-030131-3570 | 5.99E-84 | |||||
| 53 | 21 | Ad_Hb08 | all | vps8 | 791134 | ZDB-GENE-060503-348 | 3.29E-76 |