Marker Genes
Dataset: Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response
- tissue: Kidney epithelium
- ontology: Kidney epithelium
- genotype: WT
- stage: Adult
- treatment condition: Healthy
- cell/nucleus: Nuclei
- pmid: 29980650
- subset name: Combined-Epithelia healthy
- total genes: Not reported
- clustering: Seurat
- pseudotime: Monocle
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114156
Rows:66
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | RGS5 | 8490 | 10001 | 3.07 | 0.61 | 0.05 | 1.29e-97 | 2.64e-93 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | NOTCH3 | 4854 | 7883 | 1.9 | 0.52 | 0.02 | 2.55e-78 | 5.22e-74 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | CALD1 | 800 | 1441 | 1.86 | 0.67 | 0.13 | 3.98e-67 | 8.15e-63 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | SLIT3 | 6586 | 11087 | 2.01 | 0.48 | 0.08 | 3.13e-60 | 6.41e-56 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | DLC1 | 10395 | 2897 | 1.75 | 0.5 | 0.15 | 3.4e-52 | 6.97e-48 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | IGFBP7 | 3490 | 5476 | 1.32 | 0.87 | 0.43 | 5.99e-51 | 1.23e-46 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | MYH11 | 4629 | 7569 | 1.88 | 0.29 | 0.03 | 3.95e-48 | 8.1e-44 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | MYL9 | 10398 | 15754 | 1.51 | 0.38 | 0.02 | 5.04e-48 | 1.03e-43 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | PDGFRB | 5159 | 8804 | 1.55 | 0.39 | 0.02 | 1.25e-47 | 2.56e-43 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | PRKG1 | 5592 | 9414 | 1.55 | 0.53 | 0.15 | 2.64e-46 | 5.4e-42 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | CACNA1C | 775 | 1390 | 1.68 | 0.44 | 0.07 | 1.18e-45 | 2.41e-41 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | BGN | 633 | 1044 | 1.74 | 0.5 | 0.07 | 2.39e-45 | 4.9e-41 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | EBF1 | 1879 | 3126 | 1.66 | 0.51 | 0.09 | 2.04e-40 | 4.18e-36 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | NR2F2 | 7026 | 7976 | 1.34 | 0.66 | 0.2 | 1.71e-39 | 3.49e-35 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | TIMP3 | 7078 | 11822 | 1.52 | 0.58 | 0.14 | 1.09e-37 | 2.23e-33 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | FN1 | 2335 | 3778 | 1.88 | 0.41 | 0.1 | 1.06e-35 | 2.18e-31 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | C11orf96 | 387763 | 38675 | 1.68 | 0.29 | 0.02 | 3.2e-34 | 6.55e-30 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | MCAM | 4162 | 6934 | 1.49 | 0.33 | 0.03 | 2.23e-32 | 4.57e-28 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | MGP | 4256 | 7060 | 1.52 | 0.43 | 0.06 | 1.52e-31 | 3.11e-27 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | FLNA | 2316 | 3754 | 1.25 | 0.52 | 0.17 | 4.67e-30 | 9.57e-26 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | MYLK | 4638 | 7590 | 1.43 | 0.43 | 0.1 | 4.67e-30 | 9.57e-26 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | IGFBP5 | 3488 | 5474 | 0.85 | 0.6 | 0.18 | 8.38e-29 | 1.72e-24 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | SYNPO2 | 171024 | 17732 | 1.51 | 0.27 | 0.03 | 1.75e-28 | 3.58e-24 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | LHFPL6 | 10186 | 6586 | 1.25 | 0.43 | 0.17 | 5.04e-28 | 1.03e-23 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | COL1A1 | 1277 | 2197 | 1.24 | 0.4 | 0.07 | 7.13e-28 | 1.46e-23 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | COL1A2 | 1278 | 2198 | 1.22 | 0.37 | 0.06 | 6.25e-26 | 1.28e-21 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | LBH | 81606 | 29532 | 1.35 | 0.33 | 0.08 | 2.43e-25 | 4.98e-21 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | COL6A2 | 1292 | 2212 | 1.09 | 0.29 | 0.03 | 4.75e-25 | 9.72e-21 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | EPAS1 | 2034 | 3374 | 1.23 | 0.47 | 0.13 | 8.97e-25 | 1.84e-20 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | ITGA1 | 3672 | 6134 | 1.28 | 0.35 | 0.07 | 1.12e-24 | 2.29e-20 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | SPARC | 6678 | 11219 | 1.27 | 0.5 | 0.13 | 2.2e-24 | 4.5e-20 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | COL4A2 | 1284 | 2203 | 1.19 | 0.52 | 0.23 | 8.65e-23 | 1.77e-18 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | COL3A1 | 1281 | 2201 | 0.93 | 0.35 | 0.08 | 2.29e-20 | 4.69e-16 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | LGALS1 | 3956 | 6561 | 1.06 | 0.29 | 0.05 | 4.14e-19 | 8.48e-15 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | INPP4B | 8821 | 6075 | 1.17 | 0.32 | 0.09 | 1.41e-17 | 2.88e-13 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | VIM | 7431 | 12692 | 0.85 | 0.65 | 0.32 | 1.71e-17 | 3.5e-13 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | CAVIN1 | 284119 | 9688 | 0.88 | 0.36 | 0.09 | 2.04e-16 | 4.19e-12 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | TMTC1 | 83857 | 24099 | 1.07 | 0.27 | 0.06 | 3.6e-15 | 7.38e-11 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | TINAGL1 | 64129 | 19168 | 0.92 | 0.28 | 0.07 | 6.53e-13 | 1.34e-08 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | SOD3 | 6649 | 11181 | 0.9 | 0.27 | 0.07 | 8.23e-13 | 1.69e-08 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | ID3 | 3399 | 5362 | 0.91 | 0.32 | 0.12 | 2.79e-12 | 5.71e-08 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | MYH9 | 4627 | 7579 | 0.77 | 0.48 | 0.26 | 1.44e-11 | 2.95e-07 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | IFITM3 | 10410 | 5414 | 0.7 | 0.62 | 0.37 | 1.8e-11 | 3.69e-07 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | TNS1 | 7145 | 11973 | 0.94 | 0.27 | 0.1 | 2.43e-11 | 4.98e-07 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | RBMS3 | 27303 | 13427 | 0.79 | 0.25 | 0.07 | 4.26e-10 | 8.71e-06 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | ADGRE3 | 84658 | 23647 | 0.8 | 0.37 | 0.17 | 9.48e-10 | 1.94e-05 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | ACTN1 | 87 | 163 | 0.85 | 0.31 | 0.12 | 1.19e-09 | 2.44e-05 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | ROBO2 | 6092 | 10250 | 0.69 | 0.27 | 0.18 | 1.26e-09 | 2.58e-05 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | A2M | 2 | 7 | 0.78 | 0.31 | 0.11 | 4.06e-09 | 8.31e-05 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | TUBA1A | 7846 | 20766 | 0.73 | 0.33 | 0.13 | 4.55e-09 | 9.31e-05 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | ACTN4 | 81 | 166 | 0.62 | 0.53 | 0.35 | 9.36e-09 | 0.000191589 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | SERPINH1 | 871 | 1546 | 0.67 | 0.27 | 0.09 | 1.28e-08 | 0.000261985 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | ASAP1 | 50807 | 2720 | 0.67 | 0.44 | 0.23 | 1.41e-08 | 0.000289135 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | TIMP1 | 7076 | 11820 | 0.79 | 0.27 | 0.11 | 3.3e-08 | 0.000675016 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | GNAS | 2778 | 4392 | 0.48 | 0.57 | 0.39 | 4.79e-08 | 0.000981131 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | SEPTIN11 | 55752 | 25589 | 0.64 | 0.28 | 0.12 | 5.46e-08 | 0.001117869 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | ENG | 2022 | 3349 | 0.48 | 0.27 | 0.11 | 7.98e-08 | 0.001633698 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | HIP1 | 3092 | 4913 | 0.69 | 0.33 | 0.18 | 1.06e-07 | 0.002173294 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | UTRN | 7402 | 12635 | 0.62 | 0.52 | 0.34 | 1.34e-07 | 0.002741969 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | COL4A1 | 1282 | 2202 | 0.75 | 0.25 | 0.15 | 3.11e-07 | 0.006366759 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | CD99 | 4267 | 7082 | 0.65 | 0.27 | 0.12 | 1.28e-06 | 0.02 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | MT2A | 4502 | 7406 | 0.6 | 0.32 | 0.16 | 1.41e-06 | 0.02 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | SLCO3A1 | 28232 | 10952 | 0.67 | 0.29 | 0.13 | 1.45e-06 | 0.02 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | MIR4435-2HG | 541471 | 35163 | 0.7 | 0.3 | 0.14 | 1.64e-06 | 0.03 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | TCF4 | 6925 | 11634 | 0.61 | 0.34 | 0.19 | 1.72e-06 | 0.03 |
37 | 10 | Pericyte | Pericyte | Combined-Epithelia healthy | IGFBP4 | 3487 | 5473 | 0.55 | 0.27 | 0.12 | 2.15e-06 | 0.04 |