Marker Genes
Dataset: Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response
- tissue: Kidney epithelium
- ontology: Kidney epithelium
- genotype: WT
- stage: Adult
- treatment condition: Healthy
- cell/nucleus: Nuclei
- pmid: 29980650
- subset name: Combined-Epithelia
- total genes: Not reported
- clustering: Seurat
- pseudotime: Monocle
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114156
Rows:43
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGLC2 | 3538 | 5856 | 5.45 | 0.98 | 0.06 | 1.56E-156 | 3.2E-152 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGLC3 | 3539 | 5857 | 5.41 | 0.87 | 0.09 | 2.43E-148 | 4.99E-144 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGLC7 | 28834 | 5861 | 4 | 0.94 | 0.01 | 7.55E-124 | 1.55E-119 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGLC6 | 3542 | 5860 | 3.27 | 0.88 | 0.007 | 1.6E-112 | 3.27E-108 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | BCL9 | 607 | 1008 | 3.04 | 0.68 | 0.03 | 2.22E-77 | 4.54E-73 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | JCHAIN | 3512 | 5713 | 2.77 | 0.62 | 0.04 | 7.01E-41 | 1.44E-36 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGHG1 | 3500 | 5525 | 2.62 | 0.85 | 0.18 | 2.01E-47 | 4.11E-43 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGHG3 | 3502 | 5527 | 2.62 | 0.85 | 0.21 | 1.07E-46 | 2.19E-42 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGHGP | 3505 | 5529 | 2.46 | 0.85 | 0.23 | 3.4E-46 | 6.97E-42 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGHG4 | 3503 | 5528 | 2.41 | 0.8 | 0.15 | 5.23E-39 | 1.07E-34 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGHG2 | 3501 | 5526 | 2.35 | 0.81 | 0.13 | 3.67E-41 | 7.51E-37 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGLJ3 | 28831 | 5865 | 2 | 0.27 | 0 | 1.67E-32 | 3.42E-28 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | XBP1 | 7494 | 12801 | 1.62 | 0.64 | 0.13 | 3.06E-23 | 6.28E-19 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGLL1 | 3543 | 5870 | 1.58 | 0.25 | 0.001 | 3.38E-29 | 6.93E-25 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | MZB1 | 51237 | 30125 | 1.54 | 0.51 | 0.03 | 3.13E-30 | 6.42E-26 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | SSR4 | 6748 | 11326 | 1.32 | 0.52 | 0.08 | 9.07E-20 | 1.86E-15 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | PPP3CB | 5532 | 9315 | 1.28 | 0.52 | 0.05 | 5.12E-25 | 1.05E-20 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | TEX14 | 56155 | 11737 | 1.21 | 0.42 | 0.1 | 1.94E-11 | 3.98E-7 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | PIM2 | 11040 | 8987 | 1.21 | 0.41 | 0.05 | 1.85E-15 | 3.78E-11 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | MS4A6E | 245802 | 14285 | 1.05 | 0.32 | 0.03 | 1.45E-15 | 2.96E-11 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGLV10-54 | 28772 | 5884 | 1.03 | 0.3 | 0.04 | 7.65E-11 | 1.57E-6 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | AL603840.1 | NULL | 1 | 0.28 | 0.01 | 2.67E-19 | 5.46E-15 | |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | ARHGAP12 | 94134 | 16348 | 0.94 | 0.4 | 0.07 | 2.02E-12 | 4.13E-8 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | DUSP5 | 1847 | 3071 | 0.91 | 0.34 | 0.07 | 1.98E-8 | 0.000404622 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | HERPUD1 | 9709 | 13744 | 0.89 | 0.61 | 0.18 | 1.21E-14 | 2.48E-10 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | ANKRD28 | 23243 | 29024 | 0.84 | 0.38 | 0.11 | 4.37E-8 | 0.000895457 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | TPM4 | 7171 | 12013 | 0.82 | 0.45 | 0.15 | 1.49E-8 | 0.000305691 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | HSP90B1 | 7184 | 12028 | 0.78 | 0.62 | 0.25 | 9.63E-11 | 1.97E-6 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | PLCG2 | 5336 | 9066 | 0.77 | 0.32 | 0.08 | 1.12E-7 | 0.002289115 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IFNG-AS1 | 100885789 | 43910 | 0.76 | 0.31 | 0.04 | 4.28E-12 | 8.76E-8 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | IGKC | 3514 | 5716 | 0.75 | 0.88 | 0.56 | 1.76E-10 | 3.61E-6 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | MYO5A | 4644 | 7602 | 0.68 | 0.38 | 0.09 | 1.01E-9 | 2.06E-5 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | ITM2C | 81618 | 6175 | 0.66 | 0.3 | 0.05 | 5.97E-10 | 1.22E-5 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | SPCS3 | 60559 | 26212 | 0.63 | 0.3 | 0.08 | 1.23E-6 | 0.02 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | SEC61G | 23480 | 18277 | 0.58 | 0.27 | 0.07 | 1.47E-6 | 0.03 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | TENT5C | 54855 | 24712 | 0.57 | 0.32 | 0.06 | 2.81E-13 | 5.74E-9 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | RHOH | 399 | 686 | 0.56 | 0.3 | 0.06 | 9.04E-10 | 1.85E-5 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | UBALD2 | 283991 | 28438 | 0.53 | 0.28 | 0.08 | 2.26E-6 | 0.04 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | C16orf96 | 342346 | 40031 | 0.53 | 0.31 | 0.09 | 1.37E-6 | 0.02 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | TRAM1 | 23471 | 20568 | 0.48 | 0.38 | 0.14 | 3.86E-7 | 0.007896424 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | SSR3 | 6747 | 11325 | 0.46 | 0.27 | 0.07 | 4.71E-7 | 0.009642182 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | PDIA4 | 9601 | 30167 | 0.43 | 0.3 | 0.08 | 4.87E-8 | 0.000996697 |
| 36 | 9 | Plasma2 | Plasma cells | Combined-Epithelia | SEC61B | 10952 | 16993 | 0.36 | 0.28 | 0.09 | 9.18E-7 | 0.01 |