Marker Genes
Dataset: Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response
- tissue: Kidney epithelium
- ontology: Kidney epithelium
- genotype: WT
- stage: Adult
- treatment condition: Healthy
- cell/nucleus: Nuclei
- pmid: 29980650
- subset name: Combined-Epithelia
- total genes: Not reported
- clustering: Seurat
- pseudotime: Monocle
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114156
Rows:45
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | IGKC | 3514 | 5716 | 3.57 | 0.99 | 0.54 | 0 | 0 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | IGHGP | 3505 | 5529 | 3.18 | 0.96 | 0.18 | 3.94e-293 | 8.07e-289 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | IGHG2 | 3501 | 5526 | 3.14 | 0.92 | 0.09 | 1.61e-267 | 3.29e-263 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | IGHG1 | 3500 | 5525 | 3.08 | 0.93 | 0.14 | 5.25e-259 | 1.07e-254 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | IGHG3 | 3502 | 5527 | 3.07 | 0.96 | 0.16 | 1.84e-262 | 3.77e-258 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | IGHG4 | 3503 | 5528 | 3.04 | 0.91 | 0.1 | 4.56e-246 | 9.34e-242 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | JCHAIN | 3512 | 5713 | 1.85 | 0.39 | 0.03 | 1.01e-74 | 2.06e-70 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | IGKV4-1 | 28908 | 5834 | 1.85 | 0.26 | 0.01 | 3.04e-64 | 6.23e-60 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | XBP1 | 7494 | 12801 | 1.59 | 0.53 | 0.11 | 1.34e-71 | 2.75e-67 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | SSR4 | 6748 | 11326 | 1.35 | 0.46 | 0.06 | 7.63e-71 | 1.56e-66 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | MZB1 | 51237 | 30125 | 1.32 | 0.35 | 0.02 | 1.65e-75 | 3.37e-71 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | PIM2 | 11040 | 8987 | 1.29 | 0.39 | 0.04 | 7.11e-67 | 1.46e-62 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | DERL3 | 91319 | 14236 | 1.24 | 0.29 | 0.009 | 8.34e-77 | 1.71e-72 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | TEX14 | 56155 | 11737 | 1.1 | 0.34 | 0.09 | 5.07e-32 | 1.04e-27 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | ANKRD28 | 23243 | 29024 | 1.02 | 0.33 | 0.1 | 3.4e-29 | 6.97e-25 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | IFNG-AS1 | 100885789 | 43910 | 0.99 | 0.28 | 0.03 | 9.18e-41 | 1.88e-36 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | HERPUD1 | 9709 | 13744 | 0.91 | 0.5 | 0.16 | 1.7e-37 | 3.47e-33 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | TENT5C | 54855 | 24712 | 0.91 | 0.28 | 0.05 | 6.55e-30 | 1.34e-25 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | CYTOR | 112597 | 28717 | 0.9 | 0.34 | 0.1 | 9.67e-25 | 1.98e-20 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | TPM4 | 7171 | 12013 | 0.88 | 0.32 | 0.14 | 1.24e-20 | 2.53e-16 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | DUSP5 | 1847 | 3071 | 0.83 | 0.26 | 0.06 | 1.19e-21 | 2.44e-17 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | PLCG2 | 5336 | 9066 | 0.7 | 0.27 | 0.08 | 7.79e-19 | 1.6e-14 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | HSP90B1 | 7184 | 12028 | 0.68 | 0.51 | 0.24 | 1.76e-21 | 3.6e-17 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | GLCCI1 | 113263 | 18713 | 0.6 | 0.25 | 0.09 | 6.94e-13 | 1.42e-08 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | RGS1 | 5996 | 9991 | 0.55 | 0.38 | 0.14 | 3.25e-24 | 6.66e-20 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | CPEB4 | 80315 | 21747 | 0.55 | 0.25 | 0.11 | 6.6e-09 | 0.000135119 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | ELL2 | 22936 | 17064 | 0.55 | 0.36 | 0.17 | 1.43e-12 | 2.92e-08 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | MIR4435-2HG | 541471 | 35163 | 0.54 | 0.28 | 0.13 | 2.46e-09 | 5.03e-05 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | RAPGEF1 | 2889 | 4568 | 0.53 | 0.29 | 0.16 | 2.31e-07 | 0.004735643 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | FNDC3B | 64778 | 24670 | 0.52 | 0.44 | 0.29 | 8.63e-10 | 1.77e-05 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | BTG2 | 7832 | 1131 | 0.49 | 0.57 | 0.25 | 1.21e-29 | 2.48e-25 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | PDE4B | 5142 | 8781 | 0.47 | 0.28 | 0.13 | 6.3e-10 | 1.29e-05 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | AC022217.3 | NULL | 0.46 | 0.25 | 0.11 | 1.71e-09 | 3.5e-05 | |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | HSPA5 | 3309 | 5238 | 0.46 | 0.38 | 0.2 | 2.2e-10 | 4.51e-06 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | FBXW7 | 55294 | 16712 | 0.46 | 0.28 | 0.13 | 3.5e-10 | 7.16e-06 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | ST6GAL1 | 6480 | 10860 | 0.45 | 0.37 | 0.19 | 1.38e-10 | 2.82e-06 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | UBC | 7316 | 12468 | 0.37 | 0.59 | 0.42 | 3.05e-08 | 0.000625107 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | LINC-PINT | 378805 | 26885 | 0.36 | 0.51 | 0.34 | 1.1e-07 | 0.002247341 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | HSPA1B | 3304 | 5233 | 0.34 | 0.57 | 0.39 | 2.88e-08 | 0.000590504 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | JUN | 3725 | 6204 | 0.33 | 0.68 | 0.49 | 5.57e-10 | 1.14e-05 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | VOPP1 | 81552 | 34518 | 0.32 | 0.29 | 0.16 | 1.98e-07 | 0.004051504 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | RPLP1 | 6176 | 10372 | 0.31 | 0.75 | 0.6 | 6.35e-08 | 0.001300851 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | CXCR4 | 7852 | 2561 | 0.29 | 0.34 | 0.19 | 1.02e-08 | 0.000208081 |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | AC016739.1 | NULL | 0.26 | 0.38 | 0.24 | 3.35e-07 | 0.006857579 | |
36 | 8 | Plasma1 | Plasma cells | Combined-Epithelia | MTCO3P12 | 107075270 | 52042 | 0.25 | 0.59 | 0.58 | 1.63e-09 | 3.34e-05 |