Marker Genes
Dataset: Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response
- tissue: Kidney epithelium
- ontology: Kidney epithelium
- genotype: WT
- stage: Adult
- treatment condition: Healthy
- cell/nucleus: Nuclei
- pmid: 29980650
- subset name: Combined-Epithelia
- total genes: Not reported
- clustering: Seurat
- pseudotime: Monocle
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114156
Rows:120
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
36 | 6 | B cells | B cells | Combined-Epithelia | WDFY4 | 57705 | 29323 | 2.22 | 0.53 | 0.02 | 2.93e-75 | 6e-71 |
36 | 6 | B cells | B cells | Combined-Epithelia | CLNK | 116449 | 17438 | 2.01 | 0.41 | 0.04 | 5.72e-45 | 1.17e-40 |
36 | 6 | B cells | B cells | Combined-Epithelia | IRF8 | 3394 | 5358 | 1.86 | 0.53 | 0.04 | 5.28e-50 | 1.08e-45 |
36 | 6 | B cells | B cells | Combined-Epithelia | NAPSB | 256236 | 13396 | 1.8 | 0.42 | 0.01 | 1.18e-55 | 2.42e-51 |
36 | 6 | B cells | B cells | Combined-Epithelia | RUBCNL | 80183 | 20420 | 1.76 | 0.41 | 0.02 | 6.04e-50 | 1.24e-45 |
36 | 6 | B cells | B cells | Combined-Epithelia | HDAC9 | 9734 | 14065 | 1.54 | 0.61 | 0.2 | 6.71e-40 | 1.37e-35 |
36 | 6 | B cells | B cells | Combined-Epithelia | NIBAN1 | 116496 | 16784 | 1.52 | 0.47 | 0.09 | 5.23e-30 | 1.07e-25 |
36 | 6 | B cells | B cells | Combined-Epithelia | MPEG1 | 219972 | 29619 | 1.48 | 0.38 | 0.05 | 3.66e-27 | 7.49e-23 |
36 | 6 | B cells | B cells | Combined-Epithelia | CST3 | 1471 | 2475 | 1.41 | 0.7 | 0.43 | 4.74e-35 | 9.71e-31 |
36 | 6 | B cells | B cells | Combined-Epithelia | HLA-DPB1 | 3115 | 4940 | 1.32 | 0.78 | 0.39 | 2.47e-34 | 5.06e-30 |
36 | 6 | B cells | B cells | Combined-Epithelia | LCP1 | 3936 | 6528 | 1.26 | 0.56 | 0.14 | 1.64e-24 | 3.35e-20 |
36 | 6 | B cells | B cells | Combined-Epithelia | CD37 | 951 | 1666 | 1.25 | 0.35 | 0.09 | 9.16e-15 | 1.88e-10 |
36 | 6 | B cells | B cells | Combined-Epithelia | LSP1 | 4046 | 6707 | 1.24 | 0.39 | 0.06 | 6.08e-23 | 1.25e-18 |
36 | 6 | B cells | B cells | Combined-Epithelia | ACTB | 60 | 132 | 1.16 | 0.88 | 0.74 | 4.44e-34 | 9.09e-30 |
36 | 6 | B cells | B cells | Combined-Epithelia | CPVL | 54504 | 14399 | 1.14 | 0.36 | 0.1 | 1.01e-17 | 2.07e-13 |
36 | 6 | B cells | B cells | Combined-Epithelia | RAB11FIP1 | 80223 | 30265 | 1.13 | 0.26 | 0.05 | 3.96e-15 | 8.12e-11 |
36 | 6 | B cells | B cells | Combined-Epithelia | INPP5D | 3635 | 6079 | 1.1 | 0.37 | 0.11 | 5.86e-15 | 1.2e-10 |
36 | 6 | B cells | B cells | Combined-Epithelia | NEGR1 | 257194 | 17302 | 1.1 | 0.29 | 0.07 | 4.19e-14 | 8.59e-10 |
36 | 6 | B cells | B cells | Combined-Epithelia | HLA-DPA1 | 3113 | 4938 | 1.1 | 0.72 | 0.4 | 2.55e-20 | 5.21e-16 |
36 | 6 | B cells | B cells | Combined-Epithelia | FNBP1 | 23048 | 17069 | 1.09 | 0.59 | 0.26 | 2.28e-20 | 4.66e-16 |
36 | 6 | B cells | B cells | Combined-Epithelia | AFF3 | 3899 | 6473 | 1.08 | 0.31 | 0.09 | 2.33e-14 | 4.78e-10 |
36 | 6 | B cells | B cells | Combined-Epithelia | BASP1 | 10409 | 957 | 1.08 | 0.38 | 0.09 | 2.47e-15 | 5.06e-11 |
36 | 6 | B cells | B cells | Combined-Epithelia | UVRAG | 7405 | 12640 | 1.07 | 0.4 | 0.15 | 5.07e-15 | 1.04e-10 |
36 | 6 | B cells | B cells | Combined-Epithelia | HLA-DRB1 | 3123 | 4948 | 1.06 | 0.93 | 0.55 | 4.98e-30 | 1.02e-25 |
36 | 6 | B cells | B cells | Combined-Epithelia | CD74 | 972 | 1697 | 1.06 | 0.99 | 0.78 | 8.03e-32 | 1.64e-27 |
36 | 6 | B cells | B cells | Combined-Epithelia | CCSER1 | 401145 | 29349 | 1.04 | 0.94 | 0.85 | 1.84e-38 | 3.77e-34 |
36 | 6 | B cells | B cells | Combined-Epithelia | AUTS2 | 26053 | 14262 | 1.04 | 0.45 | 0.17 | 3.53e-15 | 7.22e-11 |
36 | 6 | B cells | B cells | Combined-Epithelia | HLA-DQA1 | 3117 | 4942 | 1.03 | 0.66 | 0.27 | 3.37e-19 | 6.91e-15 |
36 | 6 | B cells | B cells | Combined-Epithelia | PLCG2 | 5336 | 9066 | 1.01 | 0.25 | 0.08 | 2.44e-10 | 4.99e-06 |
36 | 6 | B cells | B cells | Combined-Epithelia | HLA-DQA2 | 3118 | 4943 | 1 | 0.37 | 0.1 | 2.07e-14 | 4.24e-10 |
36 | 6 | B cells | B cells | Combined-Epithelia | HLA-DQB1 | 3119 | 4944 | 1 | 0.51 | 0.18 | 1.61e-15 | 3.3e-11 |
36 | 6 | B cells | B cells | Combined-Epithelia | CD83 | 9308 | 1703 | 1 | 0.67 | 0.23 | 2.72e-21 | 5.57e-17 |
36 | 6 | B cells | B cells | Combined-Epithelia | FCHSD2 | 9873 | 29114 | 1 | 0.4 | 0.21 | 1.04e-13 | 2.13e-09 |
36 | 6 | B cells | B cells | Combined-Epithelia | KAT2B | 8850 | 8638 | 1 | 0.25 | 0.08 | 3.68e-10 | 7.54e-06 |
36 | 6 | B cells | B cells | Combined-Epithelia | ID2 | 3398 | 5361 | 0.98 | 0.31 | 0.13 | 2.95e-12 | 6.05e-08 |
36 | 6 | B cells | B cells | Combined-Epithelia | NAP1L1 | 4673 | 7637 | 0.96 | 0.49 | 0.2 | 5.06e-15 | 1.04e-10 |
36 | 6 | B cells | B cells | Combined-Epithelia | COTL1 | 23406 | 18304 | 0.96 | 0.38 | 0.17 | 1.93e-11 | 3.96e-07 |
36 | 6 | B cells | B cells | Combined-Epithelia | TMSB4X | 7114 | 11881 | 0.96 | 0.9 | 0.78 | 3.74e-26 | 7.67e-22 |
36 | 6 | B cells | B cells | Combined-Epithelia | HLA-DRB6 | 3128 | 4954 | 0.96 | 0.62 | 0.28 | 6.46e-16 | 1.32e-11 |
36 | 6 | B cells | B cells | Combined-Epithelia | DOCK2 | 1794 | 2988 | 0.95 | 0.26 | 0.08 | 7.46e-10 | 1.53e-05 |
36 | 6 | B cells | B cells | Combined-Epithelia | RAB8B | 51762 | 30273 | 0.94 | 0.27 | 0.09 | 4.22e-09 | 8.64e-05 |
36 | 6 | B cells | B cells | Combined-Epithelia | GNG7 | 2788 | 4410 | 0.92 | 0.27 | 0.09 | 7.91e-10 | 1.62e-05 |
36 | 6 | B cells | B cells | Combined-Epithelia | HLA-DRA | 3122 | 4947 | 0.91 | 0.9 | 0.58 | 5.18e-22 | 1.06e-17 |
36 | 6 | B cells | B cells | Combined-Epithelia | CADM1 | 23705 | 5951 | 0.88 | 0.27 | 0.09 | 1.73e-08 | 0.000355061 |
36 | 6 | B cells | B cells | Combined-Epithelia | BCAS4 | 55653 | 14367 | 0.88 | 0.69 | 0.4 | 1.41e-17 | 2.89e-13 |
36 | 6 | B cells | B cells | Combined-Epithelia | TRAK1 | 22906 | 29947 | 0.87 | 0.35 | 0.14 | 1.92e-09 | 3.93e-05 |
36 | 6 | B cells | B cells | Combined-Epithelia | AC079250.1 | NULL | 0.87 | 0.49 | 0.28 | 1.1e-13 | 2.26e-09 | |
36 | 6 | B cells | B cells | Combined-Epithelia | EEF1B2 | 1933 | 3208 | 0.86 | 0.47 | 0.25 | 3.73e-11 | 7.63e-07 |
36 | 6 | B cells | B cells | Combined-Epithelia | VAV3 | 10451 | 12659 | 0.86 | 0.32 | 0.14 | 2.57e-08 | 0.000526215 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL18A | 6142 | 10311 | 0.86 | 0.56 | 0.32 | 9.84e-15 | 2.01e-10 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS23P8 | 653658 | 35982 | 0.84 | 0.7 | 0.39 | 6.39e-17 | 1.31e-12 |
36 | 6 | B cells | B cells | Combined-Epithelia | NCKAP1L | 3071 | 4862 | 0.82 | 0.25 | 0.08 | 4.56e-08 | 0.000934746 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS11 | 6205 | 10384 | 0.82 | 0.69 | 0.47 | 8.14e-19 | 1.67e-14 |
36 | 6 | B cells | B cells | Combined-Epithelia | SLC9A9 | 285195 | 20653 | 0.81 | 0.32 | 0.12 | 6.63e-09 | 0.000135796 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL27A | 6157 | 10329 | 0.81 | 0.79 | 0.59 | 2.35e-23 | 4.81e-19 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL28 | 6158 | 10330 | 0.81 | 0.73 | 0.46 | 1.04e-16 | 2.13e-12 |
36 | 6 | B cells | B cells | Combined-Epithelia | PLEKHO1 | 51177 | 24310 | 0.8 | 0.26 | 0.09 | 6.18e-07 | 0.01 |
36 | 6 | B cells | B cells | Combined-Epithelia | AL009174.1 | NULL | 0.79 | 0.45 | 0.22 | 3.74e-10 | 7.65e-06 | |
36 | 6 | B cells | B cells | Combined-Epithelia | ARPC2 | 10109 | 705 | 0.78 | 0.46 | 0.26 | 5.82e-09 | 0.000119078 |
36 | 6 | B cells | B cells | Combined-Epithelia | PRKCB | 5579 | 9395 | 0.77 | 0.3 | 0.14 | 2.22e-07 | 0.004535888 |
36 | 6 | B cells | B cells | Combined-Epithelia | FAM49B | 51571 | 25216 | 0.76 | 0.44 | 0.18 | 7.66e-12 | 1.57e-07 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS2 | 6187 | 10404 | 0.76 | 0.52 | 0.29 | 8.22e-11 | 1.68e-06 |
36 | 6 | B cells | B cells | Combined-Epithelia | ANKRD44 | 91526 | 25259 | 0.76 | 0.34 | 0.17 | 2.77e-07 | 0.005663314 |
36 | 6 | B cells | B cells | Combined-Epithelia | RGS10 | 6001 | 9992 | 0.75 | 0.25 | 0.07 | 1.59e-08 | 0.000326288 |
36 | 6 | B cells | B cells | Combined-Epithelia | ASAP1 | 50807 | 2720 | 0.75 | 0.41 | 0.24 | 5.13e-10 | 1.05e-05 |
36 | 6 | B cells | B cells | Combined-Epithelia | EZR | 7430 | 12691 | 0.75 | 0.44 | 0.24 | 3.47e-09 | 7.1e-05 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS24 | 6229 | 10411 | 0.74 | 0.66 | 0.43 | 5.15e-14 | 1.05e-09 |
36 | 6 | B cells | B cells | Combined-Epithelia | AL136380.1 | NULL | 0.72 | 0.5 | 0.31 | 2.53e-10 | 5.18e-06 | |
36 | 6 | B cells | B cells | Combined-Epithelia | AC004453.1 | NULL | 0.71 | 0.43 | 0.23 | 2.32e-08 | 0.000475842 | |
36 | 6 | B cells | B cells | Combined-Epithelia | SAMHD1 | 25939 | 15925 | 0.71 | 0.35 | 0.18 | 3.51e-07 | 0.007185022 |
36 | 6 | B cells | B cells | Combined-Epithelia | MBNL1 | 4154 | 6923 | 0.7 | 0.53 | 0.3 | 3.34e-08 | 0.000683465 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL37 | 6167 | 10347 | 0.7 | 0.68 | 0.44 | 1.41e-12 | 2.88e-08 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPLP1 | 6176 | 10372 | 0.7 | 0.84 | 0.61 | 6.52e-19 | 1.33e-14 |
36 | 6 | B cells | B cells | Combined-Epithelia | ETV6 | 2120 | 3495 | 0.69 | 0.47 | 0.26 | 1.68e-07 | 0.003438718 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL39 | 6170 | 10350 | 0.69 | 0.52 | 0.3 | 3.07e-08 | 0.000628709 |
36 | 6 | B cells | B cells | Combined-Epithelia | AL049873.1 | NULL | 0.68 | 0.25 | 0.09 | 8.52e-07 | 0.01 | |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL23AP55 | 100271467 | 35997 | 0.68 | 0.3 | 0.12 | 4.75e-07 | 0.009730621 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL18AP3 | 390354 | 31387 | 0.68 | 0.29 | 0.14 | 1.33e-06 | 0.02 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS7P10 | 100128060 | 39903 | 0.67 | 0.45 | 0.28 | 3.41e-08 | 0.000698613 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL10P16 | 284393 | 36882 | 0.67 | 0.6 | 0.38 | 5.02e-10 | 1.03e-05 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL10P9 | 389342 | 35579 | 0.66 | 0.46 | 0.26 | 5.62e-08 | 0.001150759 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL23AP75 | 728207 | 35975 | 0.66 | 0.33 | 0.15 | 1.75e-06 | 0.03 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL39L | 116832 | 17094 | 0.66 | 0.35 | 0.2 | 7e-07 | 0.01 |
36 | 6 | B cells | B cells | Combined-Epithelia | SNX3 | 8724 | 11174 | 0.66 | 0.25 | 0.08 | 4.4e-07 | 0.009017505 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS14 | 6208 | 10387 | 0.66 | 0.68 | 0.47 | 3.7e-11 | 7.57e-07 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS29 | 6235 | 10419 | 0.66 | 0.78 | 0.65 | 1.09e-12 | 2.24e-08 |
36 | 6 | B cells | B cells | Combined-Epithelia | UBA52 | 7311 | 12458 | 0.65 | 0.47 | 0.33 | 8.03e-08 | 0.001644708 |
36 | 6 | B cells | B cells | Combined-Epithelia | TMSB4XP4 | 7118 | 11886 | 0.64 | 0.5 | 0.33 | 2.13e-09 | 4.37e-05 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL31 | 6160 | 10334 | 0.64 | 0.68 | 0.42 | 2.99e-10 | 6.11e-06 |
36 | 6 | B cells | B cells | Combined-Epithelia | LYN | 4067 | 6735 | 0.64 | 0.37 | 0.19 | 1.27e-07 | 0.002609937 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS21 | 6227 | 10409 | 0.64 | 0.45 | 0.24 | 3e-08 | 0.000614848 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL10 | 6134 | 10298 | 0.63 | 0.64 | 0.46 | 2.06e-11 | 4.22e-07 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS3 | 6188 | 10420 | 0.62 | 0.55 | 0.38 | 8.77e-09 | 0.000179529 |
36 | 6 | B cells | B cells | Combined-Epithelia | AC007969.1 | NULL | 0.62 | 0.42 | 0.25 | 4.07e-07 | 0.008325521 | |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS19 | 6223 | 10402 | 0.62 | 0.67 | 0.49 | 3.14e-09 | 6.42e-05 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL32 | 6161 | 10336 | 0.61 | 0.52 | 0.32 | 2.26e-07 | 0.00462212 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL14 | 9045 | 10305 | 0.61 | 0.55 | 0.35 | 9.17e-08 | 0.001877758 |
36 | 6 | B cells | B cells | Combined-Epithelia | PABPC1 | 26986 | 8554 | 0.6 | 0.56 | 0.36 | 3.1e-08 | 0.000634593 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL23A | 6147 | 10317 | 0.6 | 0.36 | 0.19 | 1.31e-06 | 0.02 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS8 | 6202 | 10441 | 0.6 | 0.57 | 0.38 | 7.58e-08 | 0.001551629 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS13 | 6207 | 10386 | 0.59 | 0.59 | 0.44 | 1.02e-07 | 0.00208699 |
36 | 6 | B cells | B cells | Combined-Epithelia | HLA-DRB5 | 3127 | 4953 | 0.59 | 0.69 | 0.43 | 2.11e-08 | 0.000432382 |
36 | 6 | B cells | B cells | Combined-Epithelia | ACTG1 | 71 | 144 | 0.59 | 0.63 | 0.43 | 1.89e-08 | 0.00038752 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS15 | 6209 | 10388 | 0.58 | 0.46 | 0.29 | 1.07e-06 | 0.02 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL19 | 6143 | 10312 | 0.58 | 0.64 | 0.46 | 6.93e-09 | 0.000141848 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL11 | 6135 | 10301 | 0.56 | 0.65 | 0.49 | 2.78e-07 | 0.005696743 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL8 | 6132 | 10368 | 0.56 | 0.47 | 0.37 | 2.63e-07 | 0.005389824 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS16 | 6217 | 10396 | 0.56 | 0.56 | 0.45 | 6.84e-09 | 0.000140031 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS27 | 6232 | 10416 | 0.56 | 0.6 | 0.45 | 2.21e-07 | 0.004515503 |
36 | 6 | B cells | B cells | Combined-Epithelia | MIR4300HG | 101928989 | 52003 | 0.56 | 0.74 | 0.55 | 3.44e-10 | 7.04e-06 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS12 | 6206 | 10385 | 0.56 | 0.74 | 0.55 | 3.87e-09 | 7.93e-05 |
36 | 6 | B cells | B cells | Combined-Epithelia | DGKI | 9162 | 2855 | 0.55 | 0.75 | 0.58 | 1.04e-10 | 2.13e-06 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL27 | 6155 | 10328 | 0.55 | 0.46 | 0.31 | 2.22e-06 | 0.04 |
36 | 6 | B cells | B cells | Combined-Epithelia | TMSB10 | 9168 | 11879 | 0.54 | 0.58 | 0.43 | 6.99e-07 | 0.01 |
36 | 6 | B cells | B cells | Combined-Epithelia | AC138123.2 | NULL | 0.54 | 0.74 | 0.59 | 2.43e-09 | 4.97e-05 | |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL13A | 23521 | 10304 | 0.53 | 0.67 | 0.52 | 7.38e-08 | 0.001511713 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL18 | 6141 | 10310 | 0.53 | 0.51 | 0.37 | 9.4e-07 | 0.01 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPS28 | 6234 | 10418 | 0.5 | 0.65 | 0.47 | 2.71e-07 | 0.005542034 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPL41P2 | 22970 | 10357 | 0.48 | 0.66 | 0.52 | 5.31e-07 | 0.01 |
36 | 6 | B cells | B cells | Combined-Epithelia | RPLP2 | 6181 | 10377 | 0.47 | 0.72 | 0.57 | 1.72e-07 | 0.003528005 |